Sep 13 2018 Feedback.
Contents
 
Help Videos
Reference Guide
Getting Started
Protein Structure
Molecular Graphics
Slides & ActiveICM
Cheminformatics
Tables and Plots
Local Databases
Tutorials
 
Index

Index

2D, 5.8.8, 7.3.24, 7.3.28, 7.13, 7.16.1, 7.16.3     clash Style, 3.7.3
     bioisostere, 7.8.1     clashWidth, 3.7.3
     from PDB, 7.1.1     clip Grobs, 3.7.3
     to 3D, 7.16, 7.16.2          Skin, 3.7.3
     depiction, 7.16.1          Static, 3.7.3
3D, 5.6, 5.8.8, 7.1.3, 7.3.24, 7.3.28, 7.3.31, 7.16.1, 10.2     discrete Rainbow, 3.7.4
     chemical, 7.4.16     displayLineLabels, 3.7.7
     interactive ligand editor, 2.6.5     displayMapBox, 3.7.3
     object, 5.3.9     distance Label Drag, 3.7.1
     print, 5.7     dnaBallRadius, 3.7.9
     printing, 5.7     dnaRibbonRatio, 3.7.9
     stereo, 5.6     dnaRibbonWidth, 3.7.9
     bioisostere, 7.8.2     dnaRibbonWorm, 3.7.9
     predict local flexibility, 4.5.12     dnaStickRadius, 3.7.9
          protein health, 4.5.11     dnaWormRadius, 3.7.9
          tools identify ligand binding pocket, 4.5.14     font Scale, 3.7.7
               oda, 4.5.13     fontColor, 3.7.7
4D docking, 3.2.2     fontLineSpacing, 3.7.7
ActiveICM, 2.5.1.12     grobLineWidth, 3.7.3
Atom Single Style, 3.7.3     hbond Ball Period, 3.7.1
Baell, 7.4.9               Style, 3.7.1
Beep, 3.7.11     hbondAngleSharpness, 3.7.1
BlastDB Directory, 3.7.2     hbondMinStrength, 3.7.1
     alphas, 5.8.3     hbondStyle, 3.7.1
COLLADA, 2.5.1.7     hbondWidth, 3.7.1
CPK, 2.6.1     hetatmZoom, 3.7.1
ChEMBL, 3.2.3, 7.1     hydrogenDisplay, 3.7.1
Chemical Cluster, 10.4.3     light, 3.7.3
     Search, 10.4.2     lightPosition, 3.7.3
Clash Threshold, 3.7.10     mapLineWidth, 3.7.3
DNA, 3.3     occupancy Radius Ratio, 3.7.3
Decomposition, 7.30.2     occupancyDisplay, 3.7.3
Dock Directory, 3.7.2     quality, 3.7.3
Drug Bank, 3.2.8     rainbow Bar Style, 3.7.4
Editor, 3.7.2     resLabelDrag, 3.7.7
FILTER.Z, 3.7.2     resize Keep Scale, 3.7.3
     gz, 3.7.2     ribbonRatio, 3.7.9
     uue, 3.7.2     ribbonWidth, 3.7.9
FTP.createFile, 3.7.11     ribbonWorm, 3.7.9
     keep File, 3.7.11     rocking, 3.7.4
     proxy, 3.7.11          Range, 3.7.4
Filter.zip, 3.7.2          Speed, 3.7.4
Force Auto Bond Typing, 3.7.11     selectionStyle, 3.7.3
GIF, 2.5.1.15, 5.16, 5.16.2     site Label Drag, 3.7.7
GRAPHIC.store Display, 3.7.3               Shift, 3.7.7
     NtoC Rainbow, 3.7.4     siteArrow, 3.7.7
     alignment Rainbow, 3.7.4     stereoMode, 3.7.3
     atomLabelShift, 3.7.7     stickRadius, 3.7.1
     ballStickRatio, 3.7.1     surfaceDotDensity, 3.7.3
     center Follows Clipping, 3.7.3     surfaceDotSize, 3.7.3
     transparency, 3.7.3InChi, 7.3.20, 7.4.12, 7.16.2
     wire Width, 3.7.1     key, 7.3.20
     wormRadius, 3.7.9     Directory, 3.7.2
     xstick Backbone Ratio, 3.7.1JPEG, 2.5.1.15
          Hydrogen Ratio, 3.7.1KMZ, 2.5.1.7
          Style, 3.7.1Log Directory, 3.7.2
          Vw Ratio, 3.7.1LogP, 8.6
GROB.arrowRadius, 3.7.3LogS, 8.6
     atomSphereRadius, 3.7.3MOL, 7, 7.3.3, 7.3.24, 7.3.25, 7.3.26, 7.3.27, 8.2
     contourSigmaIncrement, 3.7.3MOLT, 9.1
     relArrow Size, 3.7.3MOVIE.frame Grab Mode, 3.7.4
     relArrowHead, 3.7.3MPO, 7.28
GUI.auto Save, 3.7.4Map Atom Margin, 3.7.10
               Interval, 3.7.4     Sigma Level, 3.7.10
     enumberation Memory Limit, 3.7.11Markush, 10.4.9
     max Nof Recent Files, 3.7.11     create, 10.4.7
          Sequence Length, 3.7.4     File Size Mb, 3.7.11
     splash Screen Delay, 3.7.11Max_Fused_Rings, 7.10
               Image, 3.7.11Mnconf, 3.7.10
     table Row Mark Colors, 3.7.4MolPSA, 7.10
     workspace Folder Style, 3.7.4MolVol, 7.10
     workspaceTabStyle, 3.7.4Molcart, 7.5.3
HTTP.proxy, 3.7.11MoldHf, 7.10
     support Cookies, 3.7.11Movie.fade Nof Frames, 3.7.4
     user Agent, 3.7.11     quality, 3.7.4
How To Guide, 2          Auto, 3.7.4
Html, 3.2.1.6Nof_Atoms, 7.10
Http Read Style, 3.7.11Nof_Chirals, 7.10
Hydrogen.bond, 3.7.5Nof_HBA, 7.10
ICM Browser How To, 2.1Nof_HBD, 7.10
          Pro How To, 2.2Nof_Rings, 7.10
IMAGE.bondLength2D, 3.7.6Nof_RotBonds, 7.10
     color, 3.7.6Output Directory, 3.7.2
     compress, 3.7.6PAINS, 7.4.9, 7.10.2
     gammaCorrection, 3.7.6     chemica, 7.4.9
     generateAlpha, 3.7.6PCA, 10.4.4
     lineWidth, 3.7.6     analysis, 7.23
     lineWidth2D, 3.7.6PDB, 3.2.1.6, 4.1.2, 4.3.3, 7.1.1
     orientation, 3.7.6     Directory, 3.7.2
     paper Size, 3.7.6          Style, 3.7.2
     previewResolution, 3.7.6     link, 8.1.39
     previewer, 3.7.6     Search, 2.5.2.12, 2.5.2.13, 2.5.2.14, 2.5.2.15, 2.5.2.16
     print, 3.7.6          Field, 2.5.2.13
     printerDPI, 3.7.6          Homology, 2.5.2.15
     scale, 3.7.6          Identity, 2.5.2.14
     stereoAngle, 3.7.6          Sequence, 2.5.2.16
     stereoBase, 3.7.6     convert, 4.1.2
     stereoText, 3.7.6PFAM, 2.5.1.7
INCHI, 7.16.2PLOT.Yratio, 3.7.8
Icm Prompt, 3.7.10     color, 3.7.8
     draw Tics, 3.7.8     organization, 3.7.11
     font, 3.7.8     phone, 3.7.11
     fontSize, 3.7.8Uniprot, 8.1.39
     labelFont, 3.7.8Van Drie, 7.30.4
     lineWidth, 3.7.8     Label Style, 3.7.7
     logo, 3.7.8Water Radius, 3.7.10
     markSize, 3.7.8Wire Style, 3.7.1
     orientation, 3.7.8XPDB Directory, 3.7.2
     paper Size, 3.7.8Xstick, 2.6.1
     previewer, 3.7.8a-bright, 2.6.2
     rainbowStyle, 3.7.8acceptor, 7.4.9
     seriesLabels, 3.7.8active, 6.7
PNG, 2.5.1.15, 3.1.14, 5.16, 5.16.2activeICM, 6.8
Projects Directory, 3.7.2activeicm, 6.7, 6.12, 6.14, 6.14.1
Prosite Dat, 3.7.2     advanced, 6.14
     Viewer, 3.7.2     background images, 6.15
Pub Chem, 3.2.9     control, 6.13
PubMed, 3.2.1.7activeicmjs, 6.16
     Reference, 8.1.39activity cliff, 7.30.4, 7.30.5, 10.4.11
Pubchem, 3.2.9          tutorial, 10.4.11
QSAR, 8.6activityy, 8.6
R, 7.7, 7.30.1add database, 7.9.3
R-Group, 7.30.2     new data, 7.3.7
RMSD, 4.4.2adding fragment, 7.4.8
RNA, 3.3          in editor, 7.4.8
Ramachandran Plot, 4.5.9administration, 7.9.5
Real Format, 3.7.10album, 5.15.3
     Label Shift, 3.7.7alias, 7.4.5
          Style, 3.7.7align, 3.1.11, 7.13
SALI, 7.30.4, 10.4.11     color 2D scaffold, 7.13
SAR, 8.4.23, 8.6alpha, 2.6.2
     table, 7.30.2, 10.4.9     channel, 3.7.6
SDF, 7, 7.3.24, 7.3.25, 7.3.26, 7.3.27, 8.2ambient, 2.6.2
SEQUENCE.site Colors, 3.7.4amidinium, 7.14
SITE.label Style, 3.7.7amino acid, 3.3
     labelOffset, 3.7.7     acids, 7.4.6
     wrap Comment, 3.7.7anaglyph, 5.6
SLIDE.ignore Background Color, 3.7.4analysis, 2.5.4
          Fog, 3.7.4angle, 4.5.7, 4.5.8, 5.8.5, 5.9, 5.12.6
SMILES, 7.1.2, 7.2.4, 7.4.12animate, 2.5.3.15, 5.10.7
Select Min Grad, 3.7.10     view, 5.10.7
Show Res Code In Selection, 3.7.7animation, 5.10.7.1, 5.10.7.2, 5.10.7.3, 5.10.7.4
SureChEMBL, 3.2.4     store, 5.10.7.4
Swissprot, 2.5.1.7animations, 6
     Dat, 3.7.2annotate, 3.6.21, 7.12
     link, 8.1.39     by substructure, 7.12
Temp Directory, 3.7.2     plot, 8.4.22
USER.email, 3.7.11antialias, 2.5.1.15, 2.5.3.10
     friends, 3.7.11     lines, 2.5.3.17
     full Name, 3.7.11     lines, 2.5.3.17
append, 8.1.43bonding, 5.1.8
     table, 8.1.43     preferences, 3.7.1
     rows, 2.5.10.7box, 3.7.7, 5.8.15
area, 4.5.3, 4.5.13, 10.3.5browse, 7.3.31
aromatic, 7.3.28     mode, 7.3.31
arrange, 3.1.13.1     molt, 9.2
     window, 3.1.13.1build, 5.10.7.1
as2_graph, 3.6.5buttons, 6.14
assign, 5.1.3bye, 2.5.1.19
     2D coordinates, 7.16.1     alpha, 5.1.10
atom, 3.7.5, 7.3.28     trace, 5.1.10
atomLabelStyle, 3.7.7ca-trace, 5.1.10
atomic property fields, 4.4.6cache, 6.14.1
attachment, 7.4.3, 7.5.1calculate, 7.10
     point, 7.29.4     properties, 7.10
author, 3.2.1.3carboxylic acid, 7.14
     close tree, 7.22.5cavities, 4.5
     play slide, 6.13     closed, 4.5.4
ave, 8.7.1cell, 4.3.2
avi, 5.16, 5.16.2center, 2.5.3.20, 3.1.3, 5.12, 5.12.5, 8.1.39
axes, 8.4.14     and representative members, 8.7.2
axis, 8.4.10change height of all rows, 8.1.6
     options, 8.4.9     row height, 8.1.6
     grid, 8.4.9     selection, 3.6.7
     range, 8.4.9     speed range, 5.10.7.2
     title, 8.4.9charge, 2.5.3.21, 5.8.2, 7.4.3, 7.5.1
b-factor, 4.5.12, 10.3.10check box, 6.6.6
backbone, 5.1.10     export excel, 7.2.3
background, 5.4.2, 5.4.3     save, 7.2
     images activeicm, 6.15          3D, 7.2.5
     image, 5.4.3          editor, 7.2.4
backup, 2.5.2.11          image, 7.2.6
bad, 7.10          table, 7.2.2
     groups, 7.4.9     view, 7.3.28
ball, 3.7.5chembl, 3.2.3, 3.2.4
     and stick, 2.6.1chemical, 7, 7.3.28, 7.3.30, 7.3.31, 7.3.34, 7.3.35, 7.4.10, 7.7, 7.9.4, 7.10.2, 7.16.1, 7.18, 7.29.4, 7.29.5, 8.7.1, 10.4.4
balloon, 8.4.24     clustering, 7.22, 7.22.6
bases, 7.4.6     dictionary, 7.4.4, 7.4.5, 7.4.6
basicsel, 3.6.2     draw, 10.4.1
best, 7.3.34          spreadsheet tutorial, 10.4.1
bicyclics, 7.4.6     edit buttons, 7.4.11
binding properties, 5.3.1     editor, 7.4, 7.4.8
bioinfo menu, 2.5.4     fragments, 7.3.33
bioisoester, 7.8     group, 7.4.5
bioisostere, 7.8, 7.8.1, 7.8.2     groups, 7.4.5, 7.4.8
biological, 4.3.3     modifiers, 7.29.2
biomolecule, 2.5.5, 4.3.3, 10.3.8, 10.3.12     properties, 10.4.4
blast, 3.2.5     right click, 7.4.3
     search, 3.2.5     search, 7.5
bond, 4.2.3, 4.2.3.1, 4.2.3.2, 7.4.10          filter, 7.5.2
     sketch, 10.4.1     selection, 3.6.6
     space, 7.24     planes, 2.5.3.2
     spreadsheet, 3.2.3, 7.1.3, 7.3.1, 7.4.14, 10.4.1click, 3.1.12, 5.11, 5.12
          compare, 7.3.22clip, 5.3.10, 5.13.1
          template, 7.3.2clipboard, 5.15.3, 8.7.3
     spreadsheets, 7.3clipping planes, 5
     substituent, 7.8     tool, 5.13
     substructure, 3.2.1.1     tools, 5.13
     table display, 7.3.3clone, 2.5.1.2
     tables, 8.2close, 5.3.3, 5.3.4
     toxicity, 7.10.2     downstream cluster, 7.22.5
     append, 7.4.13     cavities, 4.5.14
     clustering, 7.22, 7.22.1cluster, 8.7.1
     draw, 7.4.1     representative.center, 7.22.2
     duplicates, 7.3.21clustering, 8.7, 10.4.3
     editor, 7.2, 7.2.2, 7.2.4, 7.2.5, 7.2.6cns, 7.28
     load, 7.1collada, 2.6.6, 5.3.7
     merge, 7.26color, 4.5.11, 5.3.2, 5.3.3, 5.3.4, 5.3.9.4, 5.4, 5.4.1, 5.8.2, 5.8.3, 7.3.35, 7.13, 8.1.44, 8.7.4
     new, 7.4.1     background, 5.4.2
     properties, 7.3.19     by, 5.4
     query, 7.4.3, 7.5.1, 7.5.3     chemical, 7.3.35
     read, 7.1     surface by proximity, 5.3.3
     save, 7.2, 7.2.2, 7.2.4, 7.2.5, 7.2.6, 7.4.13               selection, 5.3.4
     search, 7.4.3, 7.5, 7.5.1, 7.5.3     table, 7.3.27
     similarity, 7.4.3, 7.5, 7.5.1, 7.5.3     2D sketch, 7.5.5.5
     spreadsheet, 7.2, 7.2.2, 7.2.4, 7.2.5, 7.2.6, 7.3     background, 2.5.3.18, 5.4.2
     structure, 7.4.13     distance, 5.8.10
     table, 7.3, 8.2     mesh, 5.3.9.3
cheminformatics, 7, 7.3     table, 7.3.27
     tutorials, 10.4coloring, 5.4.1
chemistry, 7.18coloumn, 8.1.24
     convert, 7.16column, 8, 8.1.21, 8.1.38, 8.1.39, 8.4, 8.4.1
     pca, 7.23     annotation, 8.1.40
     smiles, 7.16.2     order, 8.1.28
     duplicates, 7.27     row width, 8.1.21
     remove.redundant, 7.27     statistics, 8.1.31
chemspace append, 10.4.4.4     visibility order, 8.1.27
     build visualize, 10.4.4.1     color, 8.1.9
     compare, 10.4.4.8     hide, 7.3.8
     delete row, 10.4.4.3     show, 7.3.8
     distinguish, 10.4.4.7combinatorial chemistry, 7.29
     export, 10.4.4.5     library, 10.4.8
     project, 10.4.4.6combine, 2.5.10.5
     select, 10.4.4.2     display style, 3.7.9
chi, 5.8.5compact tree, 7.22.5
chiral, 7.19compare, 7.3.29, 7.25, 7.26
chirality, 7.19     table, 7.3.22
clash, 3.7.5, 5.8.14     tables, 7.25
classes, 7.3.28compatible, 2.5.1.10
clear display and planes, 2.5.3.2complex, 7.6
compress, 3.7.6crystallography, 4.3.4, 4.3.6, 4.3.7
conditions, 7.5.2csv, 7.2.3, 8.1.2, 8.1.3, 8.1.20
conformational entropy, 7.21current.slide, 6.13
connect, 5.3.9.1, 5.12, 5.12.7curves, 8.4.5
     object, 5.12.7custom, 5.12, 7.3.3
connectivity, 7.4.3, 7.5.1     actions, 8.1.39
construct, 2.5.1.1, 5.10.7.1     fragments, 7.12
     molecule, 2.5.1.1     label, 5.8.8
     object, 2.5.1.1     rotation, 5.12.2
contact, 4.5, 4.5.3, 10.3.5cut, 8.1.34
     surface, 5.3.2database, 7.9, 7.29.4, 9.1
contacts, 5.3.3, 5.3.4, 7.6decompose.library, 10.4.9
contour, 4.3.6, 4.3.7decomposition, 7.29.4, 7.30.1, 8.4.23
convert, 4.1.2, 7.16.4default, 3.1.13
     chemical, 7.3.24delete, 2.5.2.1, 3.6.6, 6.6.8
          3D molecular editor, 7.4.16     all, 2.5.2.2
     local database, 2.5.1.6     column row, 8.1.37
     pdb, 10.3.2     label, 5.8.9
     local.database, 2.5.1.6     all, 2.5.2.2
     smiles, 7.16, 7.16.2, 7.16.3     angle.label, 5.9.4
converting pdb, 4.1.2     column, 8.1.37
coordinates, 7.1.3     distance.label, 5.9.4
copy, 7.3.25, 7.4.11, 7.4.17, 7.5.5.2, 8.1.34     label, 5.8.9
     cell, 8.1.35     row, 8.1.37
     chemical, 7.3.25     selection, 2.5.2.1
     paste row, 8.1.34dendrogram, 7.24.1
     row, 8.1.35density, 4.3.4, 4.3.6, 4.3.7
     rows, 8.1.43depth, 5.3.12, 5.10.5
     selection to table, 8.1.36dialog, 6.6.5
     chemical, 7.3.16diffuse, 2.6.2
cpk, 5.1.5dihedral, 4.5.8, 5.8.5
crash, 2.5.2.11     angle, 4.5
creat, 6.6.1directories preferences, 3.7.2
create, 8.1.1directory, 3.7
     markush, 7.29.3dislay ligand receptor interaction, 7.6
     new objects, 3.3display, 3.1.4, 3.1.13.1, 3.7, 4.2.3, 4.2.3.1, 4.2.3.2, 5.8.14, 5.14, 7.19
cross section, 5.13     delete distances, 5.9.4
crystal, 4.3.2     dihedral, 5.9.3
crystallographic analysis, 4.3     distance restraints, 5.8.13
          biomolecule, 4.3.3     distance2, 5.9.1
          contour map, 4.3.6          angles, 5.9
          convert2grid, 4.3.7     formal charge, 5.1.9
          crystallographic cell, 4.3.2     gradient, 5.8.16
          load eds, 4.3.4     hydrogen, 5.1.7
          maps cell, 4.3.5     mesh, 5.3.5
          symmetry packing, 4.3.1     meshes, 5.3.8
          tools, 10.3.8     planar angle, 5.9.2
     cell, 2.5.5     tab, 2.6.1
     neigbor, 4.3.1     tether, 5.8.12
     neighbors, 2.5.5     toggle, 5.8.15
     angle, 5.9.2easy rotate, 2.5.3.12
     chemical, 7.3.3edit, 4.2.3.1
     dihedral.angle, 5.9.3     chemical moledit, 7.3.26
     distace, 5.8.10     ligand tools, 2.5.2.17
     distance, 5.8.13, 5.9.1     menu, 2.5.2
     electrostatic, 2.5.3.21     molecular document, 6.6.1
     energy.gradient, 5.8.16     molecule, 7.4
     hydrogen, 5.1.7     molt, 9.3
          polar, 5.1.7     selection, 2.5.2.5
     macroshape, 5.3.6     slide, 6.4.1
     meshes, 5.3.5     table row, 8.1.23
          and display.macroshape, 2.6.6     molecule, 7.3.26
     molecule, 7.3.24     structure, 7.3.26
     origin, 5.8.11editpdbsearch, 2.5.2.12
     potential, 2.5.3.21eds, 4.3.4, 4.3.6, 4.3.7
     representations, 2.6.1electron, 4.3.4, 4.3.6, 4.3.7
     restraints, 5.8.13     denisty map, 4.3.5
     ribbon, 5.1.3     densitry map.contour, 2.5.5
     skin, 5.1.4          map, 2.5.1.7, 2.5.5, 4.3.4, 4.3.6
     surface, 5.1.6, 5.3.1electrostatic potential, 2.5.3.21
     surfaces, 2.6.6     surface, 5.3
     table, 7.3.3electrostatics, 5.3.1
     tethers, 5.8.12elegant sketch, 5.10.4
     wire, 5.1.1element, 7.4.10
     xstick, 5.1.2embed browser, 6.11
distance, 4.5, 4.5.6, 5.8.10, 5.9, 7.25     powerpoint03, 6.8
     label, 3.7.7     powerpoint07, 6.9
distances, 2.6.3     powerpoint10, 6.10
diverse set, 8.7     activeicm, 6.13
docking, 4.5.13          script, 6.13
document, 6.6.4, 6.6.5     browser, 6.7, 6.11
     navigation, 6.6.7     firefox, 6.7, 6.11
documents, 5.15.3     internet.explorer, 6.7, 6.11
donator, 7.4.9     microsoft, 6.7
     envelope, 2.6.1     powerpoint, 6.7, 6.8, 6.9, 6.10
     surface, 3.7.5energy, 4.5.11, 5.8.14, 7.21, 7.21.2
dotted line, 5.1.3entropy, 7.21.1
double, 7.4.10enumerate formal charge states, 7.15
doublet, 7.4.7     reaction, 10.4.10
drag, 3.1.11, 3.7.7, 5.8.3, 6.6.4enumeration, 7.29.4
     residue label, 2.5.3.16eps, 7.2.6
draganddrop, 3.1.11eraser, 7.4.11
draw, 7.4.17, 7.29.5exact, 7.25
     chemical, 7.4.1excel, 7.2.3
drop, 3.1.11, 6.6.4exclude fragment, 7.5.2
drug, 7.10exit, 2.5.1.19
     bank, 3.2, 3.2.8, 7.1explicit, 7.3.28
drugbank, 7.1export, 4.5.10
druglikeness, 7.4.9extra windows, 5.2
dsPocket, 3.1.8extract, 3.4.2, 7.1.3
     3d coordinates to spreadsheet, 7.1.3graphical display tutorial, 10.1
     icb, 2.5.1.5               2D3D labels, 10.1.4
     object icb, 3.4.2               annotation, 10.1.2
     icb, 2.5.1.5               color representation, 10.1.1
     pharmacophore, 7.5.5.4               labels, 10.1.3
file, 2.5.1.3graphics, 3.1
     close, 2.5.1.13     controls, 5
     compatible, 2.5.1.10     effects, 5.10
     export, 2.5.1.12     panel, 5.2
     high quality image, 5.15.1     preferences, 3.7.3
     load, 2.5.1.7     shadow, 2.5.3.13, 5.10.2
     menu, 2.5.1grid, 7.3.3
     password, 2.5.1.11grob, 3.7.5, 4.3.4, 4.3.6, 4.3.7, 5.3
     preferences, 2.5.1.16group, 7.30.1
     quick image, 2.5.1.14     column, 8.1.45
     icb, 3.1.10groups, 7.7, 7.10, 7.11
     recent, 2.5.1.17guanidinium, 7.14
     bak, 2.5.2.11gui, 3.1.1, 3.7.4
filter, 9.2     menus, 2.5
     selection, 3.6.8     preferences, 3.7.4
find chemical, 7.3.32     tabs, 2.6
fit, 7.3.34h-bond, 4.2.3, 4.2.3.1, 4.2.3.2
fitting, 8.4.15halogen, 7.10.1
flexibility, 4.5.12hardware stereo, 2.5.3.7
fog, 2.5.3.5, 5, 5.10.1hbond, 4.2, 10.3.6
font, 3.7, 3.7.7, 4.2.3.1, 5.8.2, 5.8.3, 7.3.28, 8.1.39, 8.7.4header, 3.2.1.6, 8.4.8
     preferences, 3.7.7health, 4.5.11
form view, 8.1.5heatmap, 8.4.6
formal charge, 5.1.9, 7.14, 7.15     example, 8.4.6.1
format, 8.1.2, 8.1.39help, 1
formula, 7.4.9, 7.10     videos, 1
fragment, 7.3.35, 7.30.1hetero, 7.3.28
fragments, 7.7hide, 8.1.38
free radical, 7.4.7     column, 8.1.27
freeze column, 8.1.29high, 2.5.1.15
     row, 8.1.30     quality, 2.5.3.11
frequency, 7.3.35highlight new data, 7.3.7.1
front, 5.3.10, 5.13.1histogram, 8.4, 8.4.1, 8.4.8, 8.4.10, 8.4.12, 8.4.13, 8.4.14, 8.4.15, 8.4.16, 8.4.17, 8.4.19, 8.4.21
full scene antialias, 2.5.3.10     bins, 8.4.3
     screen, 2.5.3.8     options, 8.4.2
function, 8.1.25, 8.1.31     bin.size, 8.4.2
functional.groups, 7.12     bins, 8.4.3
general preferences, 3.7.5     color, 8.4.2
generalselecttools, 3.6.1     source, 8.4.2
generator, 4.3.3     style, 8.4.2
getting started, 3     title, 8.4.2
glasses, 5.6homology, 3.2.1.2, 3.2.5
google, 2.5.1.7hover, 8.4.24
     objects, 5.3.7     add columns, 7.3.4
     3D, 2.6.6, 5.3.7     cluster center, 7.22.2
     copy 2D, 7.3.16hybridization, 7.4.3, 7.5.1
          paste, 7.3.6hydrogen, 4.2.3, 4.2.3.1, 4.2.3.2, 5.1.8, 7.4.3, 7.5.1, 10.3.6
     decompose, 10.4.9     bond, 4.2, 5.1.8, 7.6, 10.3.6
     duplicate chemicals, 7.3.21          label edit, 4.2.3.1
     edit table, 7.3.17               move, 4.2.3.2
          tree, 7.22.4     bonds, 4.2.4
     excel, 7.3.10     bond, 7.4.9
     extract 3D ph4, 7.5.5.4hydrogens, 7.3.28
     filter, 7.3.12     remove, 7.3.18
     find replace, 7.3.13hyperlink, 6.6.1, 6.6.2, 8.1.39
     mark row, 7.3.14iSee, 2.5.1.5, 2.5.1.12, 3.1.10, 5.15.3, 10.2
     markush, 10.4.8icb, 3.4.2, 3.5
          structure, 10.4.7     chemist howto chemical search, 2.4.3
     merge tables, 7.3.23               cluster, 2.4.5
     properties, 7.3.19               combi library, 2.4.7
     reactions, 10.4.10               ph4, 2.4.4
     reorder, 7.22.3               plots, 2.4.8
     sdf, 7.3.9               sketch, 2.4.1
     show hide, 7.3.8               spreadsheets, 2.4.2
     sort column, 7.3.5               stereoisomers tautomers, 2.4.6
     standardize, 7.3.18          tutorials, 2.4
     table hyperlinks, 7.3.15     object, 4.1, 10.3.2
          print, 7.3.11     script, 8.1.39
          activeicm, 2.3icmPocketFinder, 4.5.14
               create molecular documents, 2.3.3icmjs, 6.16
                    slides, 2.3.2icmpocketfinder, 10.3.7
               getting started, 2.3.1id, 8.1.26
               ppt, 2.3.4identity, 3.2.1.2
               web, 2.3.5image, 3.1.14, 3.7, 3.7.5, 5.15.3, 6.6.3, 7.2, 7.2.6, 8.4.20
          chemical clusering, 7.22.1     advanced, 5.15.3
          icm browser convert display pocket, 2.1.4     preferences, 3.7.6
                    distances angles, 2.1.9     multiple, 2.5.1.7
                    get started, 2.1.1     quality, 2.5.3.11
                    graphical display, 2.1.2     quick, 2.5.1.14, 5.15.2
                         effects, 2.1.5images, 5.15
                    images, 2.1.7inchi, 7.16.2
                    labels annotation, 2.1.6increment, 8.1.26
                    pro crystallographic tools, 2.2.6     id, 8.1.26
                         get started, 2.2.1insert, 6.6.4
                         graphics, 2.2.2     column, 8.1.25
                         plots, 2.2.8     image, 6.6.3, 8.1.33
                         sequence analysis, 2.2.7          table, 8.1.33
                         structure analysis, 2.2.3     row, 8.1.32
                         superimpose, 2.2.5     script, 6.6.4
                         surfaces, 2.2.4install, 7.9.1
                    selections, 2.1.3interaction, 4.5.3, 7.6
                    superimpose, 2.1.8interactive, 10.2
          search, 3.2interrupt, 5.10.7.3
          use gui, 3.1     animation, 5.10.7.3
html, 2.5.1.12, 3.3, 6.6.1, 6.6.7invert selection, 8.1.22
isis, 7.4.17     energetics, 7.21
isotope, 7.4.3, 7.5.1          conformational entropy, 7.21.1
iupac, 7.2.7, 7.3.20          strain, 7.21.2
javascript, 6.16     pocket, 4.2.4
join, 7.26     receptor display, 4.2
jpg, 5.15          interaction, 7.6
     means, 8.7.1     surface, 4.2.2
key chemical, 7.4.10     pocket, 3.1.8
keyboard mouse, 5.11     receptor.contact, 4.5.3
keystokes in chem-edit, 7.4.10ligand_pocket_interactions, 4.2.4
kmz, 2.6.6, 5.3.7ligedit tab, 2.6.5
label, 3.7.7, 8.7.4light, 2.6.2
     atoms, 5.8.2     tab, 2.6.2
     color, 5.8.7lighting, 5.3.9.4, 5.5
     move, 5.8.4likeness, 7.10
     residues, 5.8.3line, 3.7.5, 8.7.4
     sites, 5.8.6lineWidth, 3.7.3
     variables, 5.8.5links, 3.6.20
     2D, 2.6.3linux, 7.9.1
     3D, 2.6.3, 5.8.1lipinski rule, 7.28
     atom, 5.8.1list, 3.6.18
     atoms, 5.8.2load, 2.5.1.3, 2.5.1.17, 4.3.4, 4.3.6, 4.3.7
     color, 5.8.7     nmr model, 3.2.1.4
     custom, 5.8.8     protein structure, 4.1.1
     delete, 5.8.1, 5.8.9local databases, 9
     distance, 5.8.10     database.browse, 9.2
     drag, 2.5.3.16          edit, 9.3
     move, 2.5.3.16, 5.8.4          query, 9.4
     residue, 5.8.1          row, 9.3
     residues, 5.8.3lock, 5.3.10, 5.13.1, 7.3.31
     site, 5.8.1log, 8.4.10
     sites, 5.8.6logP, 7.4.9, 7.10
     variable, 5.8.1logS, 7.4.9, 7.10
     variables, 5.8.5logarithmic, 8.4.10
labeling, 5.8.1logout, 2.5.1.19
labels, 5.8, 7.3.28mac, 7.9.1
     distances, 5.8.10macros, 6.14
     tab, 2.6.3macroshape, 2.5.3.22, 5.3, 5.3.6
landscape, 3.7.6make, 5.10.7.1, 8.1.1
large chemical space, 10.4.4     animation, 5.10.7.1
     sdf, 7.1.2     molecular document, 6.6
layer, 5.14     molt, 9.1
layers, 5.14     selection, 3.6
learn, 7.17, 8.6     molecule, 2.5.1.1
least.squares, 8.4.15     object, 2.5.1.1
library, 7.29.4making molecular slides, 6.1
     reaction, 10.4.10     html, 6.6
ligand, 4.2.2, 7.6, 7.21, 7.21.1, 7.21.2     color, 8.4.13
     code, 3.2.1.3, 3.2.7map, 3.7.7, 4.3.4, 4.3.6, 4.3.7
     editor preferences, 2.5.2.18     cel, 4.3.5
     row, 8.1.44     documents, 10.2
     shape, 8.4.12     graphics, 5
     size, 8.4.12     matched pairs, 10.4.11
markush, 7.22.7, 7.29.1, 7.29.3, 7.30.1     table, 7.16.1
     library, 10.4.8     weight, 7.4.9
matched pair, 7.30.5, 10.4.11     editor, 7.4
          analysis, 7.30.5moledit, 7.4.8
materials, 2.6.6molskin, 5.3.2
max, 8.7.1molt, 9, 9.4
maxColorPotential, 3.7.10monochrome, 7.3.28
maximum common substructure, 7.22.6, 7.24, 7.24.1mouse, 3.1.3, 5.11, 5.12
               dendrogram, 7.24.1mov, 5.16, 5.16.2
mcs, 7.22.6, 7.24.1move, 2.5.3.19, 3.1.11, 3.1.13, 4.2.3.2, 5.3.9.1, 5.3.9.2, 5.12, 5.12.7
     rgroup decomposition, 7.22.7     column, 8.1.27
memory, 7.1.2     mesh, 5.3.9.2
menu, 6.6.5     slide, 6.4.2
     chemistry, 2.5.14     structure, 5.12
     docking, 2.5.15     tools, 5
     homology, 2.5.13     rotate, 5.11
     molmechanics, 2.5.16     slab, 5.11
     tools chemical search, 2.5.11     translate, 5.11
          molecular editor, 2.5.12     z-rotation, 5.11
     windows, 2.5.17     zoom, 5.11
merge, 7.26movie, 5.16.1
     two sets, 7.26     making, 5.16, 5.16.2
mesh, 4.2.1, 4.2.2, 4.3.4, 4.3.6, 4.3.7, 5.3, 5.3.9.1, 5.3.9.2, 5.3.9.4, 5.3.10, 5.3.11, 5.3.12, 5.13.1     open, 5.16, 5.16.2
     clip, 5.3.10mpa, 10.4.11
     color lighting, 5.3.9.4mpeg, 5.16, 5.16.1, 5.16.2
     options, 5.3.9mpg, 5.16, 5.16.2
     representation, 5.3.9.3mpo, 7.28
     save, 5.3.11multi panel, 5.2
     options, 5.3.9     parameter optimization, 7.28
meshes, 5.3.2, 5.10.5     windows, 5.2
     surfaces grobs, 5.3multiple receptor, 3.2.2
     tab, 2.6.6navigate workspace, 3.6.10
min, 8.7.1new icm session, 2.5.1.2
mmff, 7.4.16     table, 8.1.1
     type, 5.8.2     table, 8.1.1
mmp, 10.4.11nmr model, 3.2.1.4
mnSolutions, 3.7.10nof, 7.10.1
mol, 7.2, 7.2.2, 7.2.4, 7.2.5, 7.2.6, 7.4.13     chemical, 7.10.1
mol2, 7.2, 7.2.2, 7.2.4, 7.2.5, 7.2.6non-contiguous selection, 3.6.18
molcart, 7.9, 7.9.1, 7.9.2, 7.9.3, 7.9.4, 7.9.5, 9number of sp3, 7.10.1
     add database, 7.9.3numbers, 7.3.28
     administration, 7.9.5object, 3.1.11, 3.5, 10.3
     installation, 7.9.1objects, 4.1.2
     search, 7.9.4     in table, 8.3
     start, 7.9.2     in.table, 8.3
molecular, 7.3.30, 7.3.31, 7.3.34, 7.3.35occlusion, 5.3.12, 5.10.5
     animations slides, 6     shading, 5.3.12
occupancy, 5.1.3, 10.3.10picture, 2.5.1.14, 3.1.14, 5.15.2, 6.6.3
     display, 3.2.1.5     tips, 3.1.14
oda, 4.5.13     chart, 8.4.7
older version, 2.5.1.10pka, 7.14
omega, 5.8.5planar, 4.5.7, 5.8.5
open, 2.5.1.3, 3.4, 8.1.2     angle, 4.5
     file, 3.4     angle, 5.9.2
     password, 3.4.1plane, 5.3.10, 5.13, 5.13.1, 5.14
     with password, 2.5.1.4plot, 3.7, 3.7.8, 8.4, 8.4.1, 8.4.4, 8.4.8, 8.4.10, 8.4.12, 8.4.13, 8.4.14, 8.4.15, 8.4.16, 8.4.17, 8.4.19, 8.4.20, 8.4.21
     movie, 5.16, 5.16.2     R group sar, 7.30.3
     password, 2.5.1.4, 3.4.1     axis, 8.4.10
optimal, 4.5.13     color, 8.4.13
orange, 3.6.5     function, 2.5.9, 2.5.9.1
     selection, 3.6.5     grid, 8.4.14
origin, 5.8.11     header, 8.4.8
other selection, 3.6.19     inline, 8.4.21
overlay, 10.3.3     logarithmic, 8.4.11
package.activeicm, 6.13     mark, 8.4.12
packing, 4.3.1     point label, 8.4.18
password, 7.9.5     preferences, 3.7.8
paste, 7.4.11, 7.4.17, 8.1.34          groups, 8.4.23
pca, 8.5     regression, 8.4.15
pdb, 2.5.1.7, 3.2, 3.2.1.1, 3.2.7, 3.5, 10.3     selection, 8.4.17
     html, 3.2.1.6     zoom translate, 8.4.16
     preparation, 10.3.11     axis, 8.4.14
     search, 3.2.1, 3.2.1.2, 3.2.1.3, 10.3.1     display, 8.4.14
     recent, 2.5.1.18     grid, 8.4.14
     search, 2.6.4, 3.1.2     inline, 8.4.21
pdbsearchfield, 2.5.2.13     logarithmic, 8.4.11
pdbsearchhomology, 2.5.2.15pls, 7.17, 8.6
pdbsearchidentity, 2.5.2.14png, 2.5.1.14, 5.15, 5.15.2, 6.6.3, 7.2, 7.2.6
pdbsearcsequence, 2.5.2.16pocket, 3.1.8, 4.2, 4.2.1, 4.2.2, 4.5.14, 10.3.7
peptide, 3.3     surface, 4.2.1
perspective, 2.5.3.9, 5.10.6     peptide, 3.1.8
ph4, 7.5.5     properties, 3.1.8
     draw 2d, 7.5.5.1pocketome, 3.2, 3.2.2
          3d, 7.5.5.2point label, 8.4.18
     search, 7.5.5.3portait, 3.7.6
pharmacophore, 7.3.35, 7.5.5.5postscript, 3.7.6
     2D, 10.4.6powerpoint, 10.2
     3D, 10.4.5ppt, 6.12, 6.14
     clone, 7.5.5.2predict, 7.17, 8.6
     draw2D, 7.5.5.1preferences, 3.7
     draw3D, 7.5.5.2presentatio, 6.6.5
     edit, 7.5.5.1, 7.5.5.2presentation, 6.7, 6.12
     move, 7.5.5.2presentations, 6
     new, 7.5.5.2press-and-hold to rotate, 7.4.8
     search, 7.5.5, 7.5.5.3, 10.4.5, 10.4.6primary aliphatic amines, 7.14
phi, 5.8.5principal component analysis, 8.5
picking, 5print, 5.7, 8.4.19, 8.7.3
printer.resolution, 3.7.6query molt, 9.4
pro-drug, 7.20     processing, 7.5.3
prodrug, 7.20     setup, 7.5.1
project, 2.5.1.5, 10.4.4.6quick, 3.1.14
     close, 2.5.1.13     image, 5.15.2
     rename, 2.5.1.9     start move structure, 3.1.3
properties, 5.8.2, 7.10          read pdb, 3.1.2
property, 7.4.9          representation, 3.1.6
     monitor, 7.4.9          selection, 3.1.5
protect, 6.6.8               level, 3.6.3
protein, 4.4.6          what is selected, 3.6.4
     health, 4.5.11     dispalay.distance, 5.9.1
     structure, 4     start color, 3.1.7
          analysis, 4.5quit, 2.5.1.19
               closed cavities, 4.5.4     group, 7.22.7, 7.29.4
               contact areas, 4.5.3          table, 7.29.2
               distance, 4.5.6     groups, 7.29.2
               find related chains, 4.5.1r-group, 7.22.7, 7.29.2
               finding dihedral angle, 4.5.8     decomposition, 7.22.7
                    planar angle, 4.5.7     enumeration, 7.22.7
               rama export, 4.5.10r-groups, 8.4.23
               ramachandran plot, 4.5.9racemic, 7.3.28, 7.16.4
               rmsd, 4.5.2rainbow, 3.7.5, 5.8.15, 7.3.35
               surface area, 4.5.5ramachandran plot, 4.5, 4.5.10
          tutorials, 10.3range, 5.10.7.2
               analysis, 10.3.4ratio.selection, 3.7.5
               contact area, 10.3.5reactions, 7.7, 7.29.5
               convert, 10.3.2reactivity, 7.10.2
               hydrogen bond, 10.3.6read, 2.5.1.3, 2.5.1.17, 3.4, 7.3.1
               icmpocketfinder, 10.3.7     chemical, 7.1
               search, 10.3.1          spreadsheet, 7.3.1
               superimpose, 10.3.3     table, 8.1.2
     superposition, 4.4     pdb, 3.1.2
          select, 4.4.1     table, 8
          sites by apf, 4.4.6reagent, 7.29.5
          superimpose 3D, 4.4.3rear, 5.3.10, 5.13.1
               grid, 4.4.5recent files, 2.5.1.17
               multiple proteins, 4.4.4     pdb codes, 2.5.1.18
protein-protein, 4.5.13receptor, 4.2.1, 4.2.2, 7.6
proximity, 5.3.3, 5.3.4recover, 2.5.2.11
psa, 7.4.9redo, 2.5.2.10, 7.4.11
psi, 5.8.5regresion, 8.4.15
pubchem, 7.1relationship, 8.6
publication quality images, 5.3.2remove.explixit.hydrogens, 7.11
pubmed, 3.2.1.7     salt, 7.11
purple box, 2.5.3.23rename, 8.1.24
qs hydrogen bond, 4.2.3     colunn, 8.1.24
qsar, 7.17     project, 2.5.1.9
     predict, 7.17reorder column, 8.1.28
quality, 2.5.1.15, 3.7.5replace chemical, 7.3.32
residue, 3.7.7     chemical mol, 7.4.13
     alternative orientaiton, 10.3.11          spreadsheet workspace, 7.2.1
     range, 3.6.18          to chemical spreadsheet, 7.4.14
     content, 2.5.4     file, 3.5
residues, 4.2.1, 4.2.2     image plot, 8.4.20
resize, 5.3.9.1, 5.15.3     object, 3.1.9
     mesh, 5.3.9.1     pdb, 3.5
resolution, 3.2.1.3     project icb, 3.1.10
restore, 2.5.2.11, 5.3.10, 5.13.1     slide, 6.4
     recent backup, 2.5.2.11     smiles string, 7.4.15
rgroup, 7.29.4     table, 8.1.20
ribbon, 2.6.1, 3.7.9, 5.1.3     tree, 8.7.3
     preferences, 3.7.9          sdf, 7.4.14
     style, 3.7.9     image, 2.5.1.15, 3.1.14
     breaks, 5.1.3     object, 3.1.9
     cylinders, 5.1.3     password, 2.5.1.11
     smooth, 5.1.3     picture, 2.5.1.15
     worm, 5.1.3     project, 2.5.1.8, 2.5.1.9, 2.5.1.10, 3.1.10
ribbonColorStyle, 3.7.9     table.view, 8.1.7
right, 3.1.12saving, 2.5.1.8
     click, 3.1.12     project, 2.5.1.8
ring, 7.4.3, 7.4.6, 7.5.1scaffold, 7.13
rings, 7.3.28scale, 3.7.5
rmsd, 4.5, 4.5.2screenshot, 5.16, 5.16.2
rock, 2.5.3.15, 5.10.7, 5.10.7.1, 6     movie, 5.16.2
     speed, 5.10.7.2script, 3.3, 6.6.4, 6.6.5
root mean square deviation, 4.5.2sdf, 7.2, 7.2.2, 7.2.4, 7.2.5, 7.2.6, 7.3.35, 7.9, 7.9.3, 9.1
rotate, 2.5.3.15, 3.1.3, 5, 5.10.7, 5.10.7.1, 5.12, 5.12.1, 5.12.2, 6, 7.3.34search, 7.9, 7.9.4, 9.2
     chemical, 7.3.34     chembl, 3.2.3
     when pasting, 7.4.8     drugbank, 3.2.8
     easy, 2.5.3.12     filter, 7.5.2
     speed, 5.10.7.2     in workspace, 2.5.2.4
rotating fragment in editor, 7.4.8     pdb, 3.2.1
rotation, 5.12.1          chemical, 3.2.1
row, 8, 8.1.21, 8.1.34, 8.1.44          ligand code, 3.2.7
     flag, 8.1.12     pocketome, 3.2.2
     height, 8.1.6     pubchem, 3.2.9
     mark, 8.1.12     surechembl, 3.2.4
     hide, 7.3.8     tab field, 3.2.1.3
     show, 7.3.8          pdb chemical, 3.2.1.1
ruler, 5.8.15               sequence, 3.2.1.2
rxn, 7.4.13     tautomer, 7.5.3
sali, 7.30.4     uniprot, 3.2.6
     bridge, 10.3.6     in.workspace, 2.5.2.4
salts, 7.3.18secondary aliphatic amines, 7.14
sar, 7.22.7, 7.30, 8.4.23     structure, 2.5.4, 5.1.3
     analysis, 7.30select, 3.6.12, 3.6.13, 8, 8.1.44
     table, 7.30.2     a tree branch, 8.7.2
save, 3.5, 5.3.11, 5.10.7.4, 7.2.3, 8.4.20, 8.7.3     all, 3.6.14
     SMILES, 7.4.15     amino acid, 3.6.13
     molecule, 3.6.12selectneighbors workspace, 3.6.17
     neighbors, 3.6.15     organized network, 7.24
          graphic, 3.6.16sequence, 2.5.4, 3.2, 3.2.1.2, 3.2.5, 3.2.6, 3.3, 10.3
     object, 3.6.11     pattern, 3.2.1.2
     residue, 3.6.13, 3.6.18set, 7.3.31
          by number, 3.6.18     formal charges, 7.14
          number, 3.6.18shading, 5.3.12
     tree, 8.7.2shadow, 5.10.2
     atom, 3.1.5, 3.6.3shell preferences, 3.7.10
     graphical, 3.1.5, 3.6.3shift, 5.8.3
     object, 3.1.5, 3.6.3shine, 2.6.2, 3.7.5
     purple.box, 2.5.3.23shineStyle, 3.7.3
     residue, 3.1.5, 3.6.3show, 6.3.1, 8.1.38
     workspace, 3.1.5, 3.6.3     hide column, 8.1.38
selectall, 2.5.2.3side, 7.3.29
selecting.neighbors, 3.6.16     by side, 7.3.29
selection, 3.6.4, 3.6.5, 3.6.21, 5.3.4, 7.4.11, 8.4.17, 8.7.2, 8.7.4               stereo, 2.5.3.6
     clear, 2.5.2.7sigmaLevel, 4.3.6, 4.3.7
     neighbors, 2.5.2.8similarity, 7.25
     alignment, 3.6.19single, 7.4.10
     all, 2.5.2.3singlet, 7.4.7
     alter, 3.6.7sites, 4.4.6
     atom, 2.5.2.5size, 4.2.3.1
     basic, 3.6.2sketch accents, 5.10.3
     change, 3.6.7     markush, 7.29.1
     clear, 2.5.2.7     smiles, 7.4.12
     column, 8.1.22     accents, 2.5.3.14, 5.10.3
     filter, 2.5.2.5, 3.6.8skin, 2.6.1, 5.1.4
     graphical, 3.6.16slab, 5.3.10, 5.13.1
     invert, 2.5.2.6, 8.1.22slice, 5.13
     level, 2.5.3.3slide, 5.10.7.4, 6.2, 6.3.1, 6.6.1
     mode, 2.5.3.4     effects, 6.5
     near atoms, 2.5.2.8     movie, 5.16.1
     neighbors, 2.5.2.5, 2.5.2.8, 3.6.15, 3.6.17          file, 6.2
     object, 3.6.11     navigation, 6.3.2
     other, 3.6.19     show, 6.3
     properties, 2.5.2.5     blend, 6.5
     range, 8.1.22     edit, 6.4.1
     residue, 2.5.2.5     effect, 6.5
     row, 8.1.22     smooth, 6.5
     sphere, 3.6.15     transition, 6.5
     spherical, 2.5.2.8slides, 5.16.1, 6, 6.1, 6.3
     superposition, 4.4.1smiles, 7.4.9, 7.10, 7.16, 7.16.2, 7.16.3
     table, 3.6.19, 8.1.22smooth, 5.3.9.3
          elements, 8.1.22solid, 5.3.9.3
     tools, 3.6.1, 3.6.2, 3.6.7, 3.6.8sort table, 2.5.10.4
     whole, 3.6.11sorting compounds, 8.7
     workspace, 3.6.9, 3.6.17sp3, 7.10.1
selectioninvert, 2.5.2.6spec, 2.6.2
selections, 3.6speed, 5.10.7.2
spreadsheet, 7.16.1     filter, 8.1.42
standard table, 8.1     find, 8.1.8
standardize, 7.11          replace, 7.3.32
     table, 7.11     font, 8.1.10
start, 7.9.2     grid, 8.1.5
stereo, 3.7.6, 5.6, 7.3.28, 7.4.2     histogram, 8.4.1
     bond, 7.4.2     insert, 8.1.25
     hardware, 2.5.3.7     layout, 8.1.5
     side-by-side, 2.5.3.6     learning, 8.6
stereoisomer, 7.16.4     mark, 8.1.12
stereoisomers, 7.19          row, 8.1.12
stick, 3.7.5     mouse, 8.1.46
stl, 5.7     navigation, 8.1.4
stop, 5.10.7.3     new column, 8.1.25
store, 2.5.3.19, 5.10.7.4     plot, 8.4
     current view, 2.5.3.19     print, 8.1.18
strain, 4.5.11, 7.21, 7.21.2     rename, 8.1.14
structure, 4.3.3, 8.6, 10.3     rightclick, 8.1.13
     analysis, 10.3.4     save, 8.1.3
     representation, 5.1          selection, 8.1.3
     smiles, 7.16.3     search, 8.1.8
structures, 7, 7.1     select, 8.1.22
style, 3.7.5     setup, 8.1.17
substituent, 7.8.1, 7.8.2, 7.29.2     sort, 8.1.41
substructure, 7.9.4, 7.12     split fragments, 7.3.33
     alerts, 7.12     view, 8.1.5
superimpose, 2.5.8, 4.4.2, 4.4.6, 10.3.3          save, 8.1.7
     3D, 4.4.3     zoom translate, 7.3.30
     Calpha, 4.4.3     action, 8.1.46
     arrange.grid, 4.4.5     alignment, 8.1.11
     backbone, 4.4.3     append, 8.1.42
     heavy atoms, 4.4.3     clone, 8.1.15
     multiple, 4.4.4     color, 8.1.9
superposition, 10.3.3     column, 7.3.4, 8.1.25, 8.1.31, 8.1.38
surface, 2.6.1, 3.7.5, 4.2.1, 4.2.2, 5.1.6, 5.3, 5.3.3, 5.3.4     columns, 7.3.8
     area, 4.5     compare, 7.3.22
     area, 4.5.5     copy, 7.3.6
surfaces, 4.2, 5.3.1, 5.3.2, 5.10.5     cursor, 8.1.46
symmetry, 4.3.1, 4.3.3, 10.3.8, 10.3.9     delete, 8.1.13, 8.1.16
system preferences, 3.7.11     double.click, 8.1.46
tab, 8.1.2, 8.1.20     edit, 7.3.17
     pdb, 2.6.4     excel, 7.3.10, 8.1.19
table, 3.3, 7.1.3, 7.3.24, 7.3.25, 7.3.28, 7.3.30, 7.3.31, 7.3.34, 7.3.35, 7.16.1, 8, 8.1.34, 8.1.39, 8.1.44, 8.4, 8.4.1, 8.4.4, 8.4.8, 8.4.10, 8.4.12, 8.4.13, 8.4.14, 8.4.15, 8.4.16, 8.4.17, 8.4.19, 8.7.1     filter, 7.3.12, 8.1.42
     alignment, 8.1.11     find-replace, 7.3.13
     clone, 8.1.15          to screen, 8.1.4
     color, 8.1.9     font, 8.1.10
     column format, 8.1.39     grid lines, 8.1.4
     copy, 8.1.35, 8.1.36     hide, 8.1.38
     delete, 8.1.16     hyperlink, 7.3.15
     edit, 8.1.23     insert, 8.1.32
     label, 7.3.14          clustering, 2.5.10.3
     landscape, 8.1.17          merge, 2.5.10.5
     mark, 7.3.14          predict, 2.5.10.2
     merge, 2.5.10.5, 7.3.23, 7.26tooltip, 8.4.24
     mouse, 8.1.46     balloons, 8.4.24
     name, 8.1.14torsion, 5.12.6
     new, 8.1.1     angles, 5.12, 5.12.6
     options, 8.1.13toxscore, 7.10.2
     orientation, 8.1.17trace, 5.1.10
     portrait, 8.1.17transitions, 6
     print, 7.3.11, 8.1.4, 8.1.18translate, 3.1.3, 5, 5.12, 7.3.30
     read, 8.1.2translation, 5.12.3, 8.4.16
     rename, 8.1.14transparent, 5.3.9.3
     right click, 8.1.13     background, 5.15.3
     row, 8.1.32tree, 7.22.7, 8.7.2, 8.7.3, 8.7.4
     rows, 2.5.10.7     distance, 7.22.3
     save, 7.3.9, 8.1.3, 8.1.4, 8.1.20     edit, 7.22.4
     scale, 8.1.17     reorder, 7.22.3
     scroll, 8.1.4triplet, 7.4.7
     sdf, 7.3.9tsv, 8.1.20
     select, 8.1.22tut analyze alternative orientations, 10.3.11
     setup, 8.1.17          occupancy, 10.3.10
     sort, 2.5.10.4, 7.3.5, 8.1.41          symmetry, 10.3.9
     standard, 8.1tut3e, 10.3.12
     view, 7.3.29tutorial 2D pharmacophore, 10.4.6
     width, 8.1.4     3D pharmacophore, 10.4.5
tables, 7.25, 8     chemical clustering, 10.4.3
tag, 3.6.21, 8.1.45          search, 10.4.2
tags, 3.6.21     molecular documents, 10.2
tautomer, 7.18tutorials, 10
tautomers, 7.18two, 7.3.24
temperature, 4.5.12unclip, 5.3.10, 5.13.1
template, 7.4.6undisplay, 3.1.4, 5.1.7
templates, 7.4.6     origin, 5.8.11
terminal, 7.3.28undo, 2.5.2.9, 3.7, 7.4.11
text, 3.7.7, 6.6, 6.6.1, 6.6.7, 7.3.28, 7.9.4, 8.4.22uniprot, 3.2.6
     search, 7.5.4unique, 7.3.28, 7.27
texture, 2.6.6unit, 4.3.3
three, 7.3.24unusual peptide, 3.3
threshold, 3.7.5     activeicm, 6.12
tier, 3.1.13user, 7.9.5
     racemic, 7.16user-defined groups, 7.4.5
tools 3D, 2.5.6uundisplay-all, 2.5.3.1
     analysis, 2.5.7van der waal, 5.8.14
     append rows, 2.5.10.7variable, 3.7.7
     extras, 2.5.9very large sdf files, 7.1.2
          plot function, 2.5.9.1video, 1, 5.16, 5.16.1, 5.16.2
     superimpose, 2.5.8view, 2.5.3.19, 6.3.1, 7.3.28
     table, 2.5.10     animate view, 2.5.3.15
          Learn, 2.5.10.1     center, 2.5.3.20
     fog, 2.5.3.5 
     macroshape, 2.5.3.22 
     menu, 2.5.3 
     mesh clip, 5.13.1 
     perspective, 2.5.3.9 
     selection level, 2.5.3.3 
          mode, 2.5.3.4 
     shadow, 2.5.3.13 
     sketch accents, 2.5.3.14 
     slide show, 6.3.1 
     tools, 2.5.3 
     tree, 8.7.4 
     undisplay all, 2.5.3.1 
virus, 4.3.3 
visualize, 7.24 
     chemical space, 7.24 
volume, 7.4.9 
wavefront, 2.6.6, 5.3.11 
web, 10.2 
     browser, 2.5.1.12 
weight, 7.10 
weighted, 8.7.1 
width, 8.1.21 
window, 3.1.13 
windows, 3.1.13.1, 7.9.1 
wire, 2.6.1, 3.7.5, 5.1.1 
wireBondSeparation, 3.7.1 
workspace, 3.1.4 
     panel, 3.1.4 
     selection, 3.6.9 
     navigation, 3.6.10 
write, 3.1.14, 3.5, 8.4.20 
     excel, 7.2.3 
     image, 2.5.1.15 
     images, 5.15 
     pdb, 3.5 
     image, 2.5.1.15 
     object, 3.1.9 
     picture, 2.5.1.15 
     project, 2.5.1.8, 3.1.10 
     table, 8.1.3 
     ray, 2.5.5 
xi, 5.8.5 
xls, 7.2.3 
xlsx, 7.2.3 
xstick, 5.1.2 
youtube, 1 
zoom, 3.1.3, 5, 5.12, 5.12.4, 7.3.30, 8.4.16 

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