Mar 10 2017 Feedback.
Contents
 
Reference Guide
Getting Started
Protein Structure
Molecular Graphics
Slides & ActiveICM
Cheminformatics
Tables and Plots
Local Databases
Tutorials
 
Index

Index

2D, 4.8.8, 6.3.24, 6.3.28, 6.13, 6.16.1, 6.16.3     clip Grobs, 2.7.3
     from PDB, 6.1.1          Skin, 2.7.3
     to 3D, 6.16, 6.16.2          Static, 2.7.3
     depiction, 6.16.1     discrete Rainbow, 2.7.4
3D, 4.6, 4.8.8, 6.1.3, 6.3.24, 6.3.28, 6.3.31, 6.16.1, 9.2     displayLineLabels, 2.7.7
     chemical, 6.4.16     displayMapBox, 2.7.3
     interactive ligand editor, 1.6.5     distance Label Drag, 2.7.1
     object, 4.3.9     dnaBallRadius, 2.7.9
     print, 4.7     dnaRibbonRatio, 2.7.9
     printing, 4.7     dnaRibbonWidth, 2.7.9
     stereo, 4.6     dnaRibbonWorm, 2.7.9
     predict local flexibility, 3.5.12     dnaStickRadius, 2.7.9
          protein health, 3.5.11     dnaWormRadius, 2.7.9
          tools identify ligand binding pocket, 3.5.14     font Scale, 2.7.7
               oda, 3.5.13     fontColor, 2.7.7
4D docking, 2.2.2     fontLineSpacing, 2.7.7
ActiveICM, 1.5.1.12     grobLineWidth, 2.7.3
Atom Single Style, 2.7.3     hbond Ball Period, 2.7.1
Baell, 6.4.9               Style, 2.7.1
Beep, 2.7.11     hbondAngleSharpness, 2.7.1
BlastDB Directory, 2.7.2     hbondMinStrength, 2.7.1
     alphas, 4.8.3     hbondStyle, 2.7.1
COLLADA, 1.5.1.7     hbondWidth, 2.7.1
CPK, 1.6.1     hetatmZoom, 2.7.1
ChEMBL, 2.2.3, 6.1     hydrogenDisplay, 2.7.1
Chemical Cluster, 9.4.3     light, 2.7.3
     Search, 9.4.2     lightPosition, 2.7.3
Clash Threshold, 2.7.10     mapLineWidth, 2.7.3
DNA, 2.3     occupancy Radius Ratio, 2.7.3
Decomposition, 6.29.2     occupancyDisplay, 2.7.3
Dock Directory, 2.7.2     quality, 2.7.3
Drug Bank, 2.2.8     rainbow Bar Style, 2.7.4
Editor, 2.7.2     resLabelDrag, 2.7.7
FILTER.Z, 2.7.2     resize Keep Scale, 2.7.3
     gz, 2.7.2     ribbonRatio, 2.7.9
     uue, 2.7.2     ribbonWidth, 2.7.9
FTP.createFile, 2.7.11     ribbonWorm, 2.7.9
     keep File, 2.7.11     rocking, 2.7.4
     proxy, 2.7.11          Range, 2.7.4
Filter.zip, 2.7.2          Speed, 2.7.4
Force Auto Bond Typing, 2.7.11     selectionStyle, 2.7.3
GIF, 1.5.1.15, 4.16, 4.16.2     site Label Drag, 2.7.7
GRAPHIC.store Display, 2.7.3               Shift, 2.7.7
     NtoC Rainbow, 2.7.4     siteArrow, 2.7.7
     alignment Rainbow, 2.7.4     stereoMode, 2.7.3
     atomLabelShift, 2.7.7     stickRadius, 2.7.1
     ballStickRatio, 2.7.1     surfaceDotDensity, 2.7.3
     center Follows Clipping, 2.7.3     surfaceDotSize, 2.7.3
     clash Style, 2.7.3     surfaceProbeRadius, 2.7.3
     clashWidth, 2.7.3     transparency, 2.7.3

     wormRadius, 2.7.9JPEG, 1.5.1.15
     xstick Backbone Ratio, 2.7.1KMZ, 1.5.1.7
          Hydrogen Ratio, 2.7.1Log Directory, 2.7.2
          Style, 2.7.1LogP, 7.6
          Vw Ratio, 2.7.1LogS, 7.6
GROB.arrowRadius, 2.7.3MOL, 6, 6.3.3, 6.3.24, 6.3.25, 6.3.26, 6.3.27, 7.2
     atomSphereRadius, 2.7.3MOLT, 8.1
     contourSigmaIncrement, 2.7.3MOVIE.frame Grab Mode, 2.7.4
     relArrow Size, 2.7.3MPO, 6.27
     relArrowHead, 2.7.3Map Atom Margin, 2.7.10
GUI.auto Save, 2.7.4     Sigma Level, 2.7.10
               Interval, 2.7.4Markush, 9.4.9
     enumberation Memory Limit, 2.7.11     create, 9.4.7
     max Nof Recent Files, 2.7.11     File Size Mb, 2.7.11
          Sequence Length, 2.7.4Max_Fused_Rings, 6.10
     splash Screen Delay, 2.7.11Mnconf, 2.7.10
               Image, 2.7.11MolPSA, 6.10
     table Row Mark Colors, 2.7.4MolVol, 6.10
     workspace Folder Style, 2.7.4Molcart, 6.5.3
     workspaceTabStyle, 2.7.4MoldHf, 6.10
HTTP.proxy, 2.7.11Movie.fade Nof Frames, 2.7.4
     support Cookies, 2.7.11     quality, 2.7.4
     user Agent, 2.7.11          Auto, 2.7.4
How To Guide, 1Nof_Atoms, 6.10
Html, 2.2.1.6Nof_Chirals, 6.10
Http Read Style, 2.7.11Nof_HBA, 6.10
Hydrogen.bond, 2.7.5Nof_HBD, 6.10
ICM Browser How To, 1.1Nof_Rings, 6.10
          Pro How To, 1.2Nof_RotBonds, 6.10
IMAGE.bondLength2D, 2.7.6Output Directory, 2.7.2
     color, 2.7.6PAINS, 6.4.9, 6.10.2
     compress, 2.7.6     chemica, 6.4.9
     gammaCorrection, 2.7.6PCA, 9.4.4
     generateAlpha, 2.7.6     analysis, 6.23
     lineWidth, 2.7.6PDB, 2.2.1.6, 3.1.2, 3.3.3, 6.1.1
     lineWidth2D, 2.7.6     Directory, 2.7.2
     orientation, 2.7.6          Style, 2.7.2
     paper Size, 2.7.6     link, 7.1.37
     previewResolution, 2.7.6     Search, 1.5.2.12, 1.5.2.13, 1.5.2.14, 1.5.2.15, 1.5.2.16
     previewer, 2.7.6          Field, 1.5.2.13
     print, 2.7.6          Homology, 1.5.2.15
     printerDPI, 2.7.6          Identity, 1.5.2.14
     scale, 2.7.6          Sequence, 1.5.2.16
     stereoAngle, 2.7.6     convert, 3.1.2
     stereoBase, 2.7.6PFAM, 1.5.1.7
     stereoText, 2.7.6PLOT.Yratio, 2.7.8
Icm Prompt, 2.7.10     color, 2.7.8
InChi, 6.3.20, 6.4.12     date, 2.7.8
     key, 6.3.20     draw Tics, 2.7.8
     Directory, 2.7.2     font, 2.7.8

     labelFont, 2.7.8Van Drie, 6.29.3
     lineWidth, 2.7.8     Label Style, 2.7.7
     logo, 2.7.8Water Radius, 2.7.10
     markSize, 2.7.8Wire Style, 2.7.1
     orientation, 2.7.8XPDB Directory, 2.7.2
     paper Size, 2.7.8Xstick, 1.6.1
     previewer, 2.7.8a-bright, 1.6.2
     rainbowStyle, 2.7.8acceptor, 6.4.9
     seriesLabels, 2.7.8active, 5.7
PNG, 1.5.1.15, 2.1.14, 4.16, 4.16.2activeICM, 5.8
Projects Directory, 2.7.2activeicm, 5.7, 5.12, 5.14, 5.14.1
Prosite Dat, 2.7.2     advanced, 5.14
     Viewer, 2.7.2     background images, 5.15
Pub Chem, 2.2.9     control, 5.13
PubMed, 2.2.1.7activeicmjs, 5.16
     Reference, 7.1.37activity cliff, 6.29.3, 6.29.4
Pubchem, 2.2.9activityy, 7.6
QSAR, 7.6add database, 6.9.3
R, 6.7, 6.29.1     new data, 6.3.7
R-Group, 6.29.2adding fragment, 6.4.8
RMSD, 3.4.2          in editor, 6.4.8
RNA, 2.3administration, 6.9.5
Ramachandran Plot, 3.5.9album, 4.15.3
Real Format, 2.7.10alias, 6.4.5
     Label Shift, 2.7.7align, 2.1.11, 6.13
          Style, 2.7.7     color 2D scaffold, 6.13
SALI, 6.29.3alpha, 1.6.2
SAR, 7.6     channel, 2.7.6
     table, 6.29.2, 9.4.9ambient, 1.6.2
SDF, 6, 6.3.24, 6.3.25, 6.3.26, 6.3.27, 7.2amidinium, 6.14
SEQUENCE.site Colors, 2.7.4amino acid, 2.3
SITE.label Style, 2.7.7     acids, 6.4.6
     labelOffset, 2.7.7anaglyph, 4.6
     wrap Comment, 2.7.7analysis, 1.5.4
SLIDE.ignore Background Color, 2.7.4angle, 3.5.7, 3.5.8, 4.8.5, 4.9, 4.12.6
          Fog, 2.7.4animate, 1.5.3.15, 4.10.7
SMILES, 6.1.2, 6.2.4, 6.4.12     view, 4.10.7
Select Min Grad, 2.7.10animation, 4.10.7.1, 4.10.7.2, 4.10.7.3, 4.10.7.4
Show Res Code In Selection, 2.7.7     store, 4.10.7.4
SureChEMBL, 2.2.4animations, 5
Swissprot, 1.5.1.7annotate, 2.6.21, 6.12
     Dat, 2.7.2     by substructure, 6.12
     link, 7.1.37     plot, 7.4.20
Temp Directory, 2.7.2antialias, 1.5.1.15, 1.5.3.10
USER.email, 2.7.11     lines, 1.5.3.17
     friends, 2.7.11     lines, 1.5.3.17
     full Name, 2.7.11apf, 3.4.6
     organization, 2.7.11append, 7.1.41
     phone, 2.7.11     table, 7.1.41
Uniprot, 7.1.37     rows, 1.5.10.7

aromatic, 6.3.28     mode, 6.3.31
arrange, 2.1.13.1     molt, 8.2
     window, 2.1.13.1build, 4.10.7.1
as2_graph, 2.6.5buttons, 5.14
assign, 4.1.3bye, 1.5.1.19
     2D coordinates, 6.16.1     alpha, 4.1.10
atom, 2.7.5, 6.3.28     trace, 4.1.10
atomLabelStyle, 2.7.7ca-trace, 4.1.10
atomic property fields, 3.4.6cache, 5.14.1
attachment, 6.4.3, 6.5.1calculate, 6.10
     point, 6.28.4     properties, 6.10
author, 2.2.1.3carboxylic acid, 6.14
     close tree, 6.22.5cavities, 3.5
     play slide, 5.13     closed, 3.5.4
ave, 7.7.1cell, 3.3.2
avi, 4.16, 4.16.2center, 1.5.3.20, 2.1.3, 4.12, 4.12.5, 7.1.37
axes, 7.4.13     and representative members, 7.7.2
axis, 7.4.9change height of all rows, 7.1.6
     options, 7.4.8     row height, 7.1.6
     grid, 7.4.8     selection, 2.6.7
     range, 7.4.8     speed range, 4.10.7.2
     title, 7.4.8charge, 1.5.3.21, 4.8.2, 6.4.3, 6.5.1
b-factor, 3.5.12, 9.3.10chem export excel, 6.2.3
backbone, 4.1.10     save, 6.2
background, 4.4.2, 4.4.3          3D, 6.2.5
     images activeicm, 5.15          editor, 6.2.4
     image, 4.4.3          image, 6.2.6
backup, 1.5.2.11          table, 6.2.2
bad, 6.10     view, 6.3.28
     groups, 6.4.9chembl, 2.2.3, 2.2.4
ball, 2.7.5chemical, 6, 6.3.28, 6.3.30, 6.3.31, 6.3.34, 6.3.35, 6.4.10, 6.7, 6.9.4, 6.10.2, 6.16.1, 6.18, 6.28.4, 6.28.5, 7.7.1, 9.4.4
     and stick, 1.6.1     clustering, 6.22, 6.22.6
balloon, 7.4.21     dictionary, 6.4.4, 6.4.5, 6.4.6
bases, 6.4.6     draw, 9.4.1
basicsel, 2.6.2          spreadsheet tutorial, 9.4.1
best, 6.3.34     edit buttons, 6.4.11
bicyclics, 6.4.6     editor, 6.4, 6.4.8
binding properties, 4.3.1     fragments, 6.3.33
bioinfo menu, 1.5.4     group, 6.4.5
bioisoester, 6.8     groups, 6.4.5, 6.4.8
bioisostere, 6.8     modifiers, 6.28.2
biological, 3.3.3     properties, 9.4.4
biomolecule, 1.5.5, 3.3.3, 9.3.8, 9.3.12     right click, 6.4.3
blast, 2.2.5     search, 6.5
     search, 2.2.5          filter, 6.5.2
bond, 3.2.3, 3.2.3.1, 3.2.3.2, 6.4.10          text, 6.5.4
bonding, 4.1.8     sketch, 9.4.1
     preferences, 2.7.1     spreadsheet, 2.2.3, 6.1.3, 6.3.1, 6.4.14, 9.4.1
box, 2.7.7, 4.8.15          compare, 6.3.22
browse, 6.3.31          template, 6.3.2

     substituent, 6.8     tool, 4.13
     substructure, 2.2.1.1     tools, 4.13
     table display, 6.3.3clone, 1.5.1.2
     tables, 7.2close, 4.3.3, 4.3.4
     toxicity, 6.10.2     downstream cluster, 6.22.5
     append, 6.4.13     cavities, 3.5.14
     clustering, 6.22, 6.22.1cluster, 7.7.1
     draw, 6.4.1     representative.center, 6.22.2
     duplicates, 6.3.21clustering, 7.7, 9.4.3
     editor, 6.2, 6.2.2, 6.2.4, 6.2.5, 6.2.6cns, 6.27
     load, 6.1collada, 1.6.6, 4.3.7
     merge, 6.25color, 3.5.11, 4.3.2, 4.3.3, 4.3.4, 4.3.9.4, 4.4, 4.4.1, 4.8.2, 4.8.3, 6.3.35, 6.13, 7.1.42, 7.7.4
     new, 6.4.1     background, 4.4.2
     properties, 6.3.19     by, 4.4
     query, 6.4.3, 6.5.1, 6.5.3     chemical, 6.3.35
     read, 6.1     surface by proximity, 4.3.3
     save, 6.2, 6.2.2, 6.2.4, 6.2.5, 6.2.6, 6.4.13               selection, 4.3.4
     search, 6.4.3, 6.5, 6.5.1, 6.5.3     table, 6.3.27
     similarity, 6.4.3, 6.5, 6.5.1, 6.5.3     2D sketch, 6.5.5.5
     spreadsheet, 6.2, 6.2.2, 6.2.4, 6.2.5, 6.2.6, 6.3     background, 1.5.3.18, 4.4.2
     structure, 6.4.13     distance, 4.8.10
     table, 6.3, 7.2     mesh, 4.3.9.3
cheminformatics, 6, 6.3     table, 6.3.27
     tutorials, 9.4coloring, 4.4.1
chemistry, 6.18coloumn, 7.1.24
     convert, 6.16column, 7, 7.1.21, 7.1.36, 7.1.37, 7.4, 7.4.1
     pca, 6.23     annotation, 7.1.38
     smiles, 6.16.2     row width, 7.1.21
     duplicates, 6.26     statistics, 7.1.29
     remove.redundant, 6.26     color, 7.1.9
chemspace append, 9.4.4.4     hide, 6.3.8
     build visualize, 9.4.4.1     show, 6.3.8
     compare, 9.4.4.8combinatorial chemistry, 6.28
     delete row, 9.4.4.3     library, 9.4.8
     distinguish, 9.4.4.7combine, 1.5.10.5
     export, 9.4.4.5     display style, 2.7.9
     project, 9.4.4.6compact tree, 6.22.5
     select, 9.4.4.2compare, 6.3.29, 6.24, 6.25
chi, 4.8.5     table, 6.3.22
chiral, 6.19     tables, 6.24
chirality, 6.19compatible, 1.5.1.10
clash, 2.7.5, 4.8.14complex, 6.6
classes, 6.3.28compound, 2.2.1.3, 6.18, 7.2
clear display and planes, 1.5.3.2compress, 2.7.6
     selection, 2.6.6conditions, 6.5.2
     planes, 1.5.3.2conformational entropy, 6.21
click, 2.1.12, 4.11, 4.12connect, 4.3.9.1, 4.12, 4.12.7
clip, 4.3.10, 4.13.1     object, 4.12.7
clipboard, 4.15.3, 7.7.3connectivity, 6.4.3, 6.5.1
clipping planes, 4construct, 1.5.1.1, 4.10.7.1

     object, 1.5.1.1cut, 7.1.32
contact, 3.5, 3.5.3, 9.3.5database, 6.9, 6.28.4, 8.1
     surface, 4.3.2decompose.library, 9.4.9
contacts, 4.3.3, 4.3.4, 6.6decomposition, 6.28.4, 6.29.1
contour, 3.3.6, 3.3.7default, 2.1.13
convert, 3.1.2, 6.16.4delete, 1.5.2.1, 2.6.6, 5.6.7
     chemical, 6.3.24     all, 1.5.2.2
          3D molecular editor, 6.4.16     column row, 7.1.35
     local database, 1.5.1.6     label, 4.8.9
     pdb, 9.3.2     all, 1.5.2.2
     local.database, 1.5.1.6     angle.label, 4.9.4
     smiles, 6.16, 6.16.2, 6.16.3     column, 7.1.35
converting pdb, 3.1.2     distance.label, 4.9.4
coordinates, 6.1.3     label, 4.8.9
copy, 6.3.25, 6.4.11, 6.4.17, 6.5.5.2, 7.1.32     row, 7.1.35
     cell, 7.1.33     selection, 1.5.2.1
     chemical, 6.3.25density, 3.3.4, 3.3.6, 3.3.7
     paste row, 7.1.32depth, 4.3.12, 4.10.5
     row, 7.1.33dialog, 5.6.5
     rows, 7.1.41diffuse, 1.6.2
     selection to table, 7.1.34dihedral, 3.5.8, 4.8.5
     chemical, 6.3.16     angle, 3.5
cpk, 4.1.5directories preferences, 2.7.2
crash, 1.5.2.11directory, 2.7
creat, 5.6.1dislay ligand receptor interaction, 6.6
create, 7.1.1display, 2.1.4, 2.1.13.1, 2.7, 3.2.3, 3.2.3.1, 3.2.3.2, 4.8.14, 4.14, 6.19
     markush, 6.28.3     delete distances, 4.9.4
     new objects, 2.3     dihedral, 4.9.3
cross section, 4.13     distance restraints, 4.8.13
crystal, 3.3.2     distance2, 4.9.1
crystallographic analysis, 3.3          angles, 4.9
          biomolecule, 3.3.3     formal charge, 4.1.9
          contour map, 3.3.6     gradient, 4.8.16
          convert2grid, 3.3.7     hydrogen, 4.1.7
          crystallographic cell, 3.3.2     mesh, 4.3.5
          load eds, 3.3.4     meshes, 4.3.8
          maps cell, 3.3.5     planar angle, 4.9.2
          symmetry packing, 3.3.1     tab, 1.6.1
          tools, 9.3.8     tether, 4.8.12
     cell, 1.5.5     toggle, 4.8.15
     neigbor, 3.3.1     CPK, 4.1.5
     neighbors, 1.5.5     angle, 4.9.2
crystallography, 3.3.4, 3.3.6, 3.3.7     chemical, 6.3.3
csv, 6.2.3, 7.1.2, 7.1.3, 7.1.20     dihedral.angle, 4.9.3
current.slide, 5.13     distace, 4.8.10
custom, 4.12, 6.3.3     distance, 4.8.13, 4.9.1
     actions, 7.1.37     electrostatic, 1.5.3.21
     fragments, 6.12     energy.gradient, 4.8.16
     label, 4.8.8     hydrogen, 4.1.7
     rotation, 4.12.2          polar, 4.1.7

     meshes, 4.3.5     table row, 7.1.23
          and display.macroshape, 1.6.6     molecule, 6.3.26
     molecule, 6.3.24     structure, 6.3.26
     origin, 4.8.11editpdbsearch, 1.5.2.12
     potential, 1.5.3.21eds, 3.3.4, 3.3.6, 3.3.7
     representations, 1.6.1electron, 3.3.4, 3.3.6, 3.3.7
     restraints, 4.8.13     denisty map, 3.3.5
     ribbon, 4.1.3     densitry map.contour, 1.5.5
     skin, 4.1.4          map, 1.5.1.7, 1.5.5, 3.3.4, 3.3.6
     surface, 4.1.6, 4.3.1electrostatic potential, 1.5.3.21
     surfaces, 1.6.6     surface, 4.3
     table, 6.3.3electrostatics, 4.3.1
     tethers, 4.8.12elegant sketch, 4.10.4
     wire, 4.1.1element, 6.4.10
     xstick, 4.1.2embed browser, 5.11
distance, 3.5, 3.5.6, 4.8.10, 4.9, 6.24     powerpoint03, 5.8
     label, 2.7.7     powerpoint07, 5.9
distances, 1.6.3     powerpoint10, 5.10
diverse set, 7.7     activeicm, 5.13
docking, 3.5.13          script, 5.13
document, 5.6.4, 5.6.5     browser, 5.7, 5.11
     navigation, 5.6.6     firefox, 5.7, 5.11
documents, 4.15.3     internet.explorer, 5.7, 5.11
donator, 6.4.9     microsoft, 5.7
     envelope, 1.6.1     powerpoint, 5.7, 5.8, 5.9, 5.10
     surface, 2.7.5energy, 3.5.11, 4.8.14, 6.21, 6.21.2
dotted line, 4.1.3entropy, 6.21.1
double, 6.4.10enumerate formal charge states, 6.15
doublet, 6.4.7     reaction, 9.4.10
drag, 2.1.11, 2.7.7, 4.8.3, 5.6.4enumeration, 6.28.4
     residue label, 1.5.3.16eps, 6.2.6
draganddrop, 2.1.11eraser, 6.4.11
draw, 6.4.17, 6.28.5exact, 6.24
     chemical, 6.4.1excel, 6.2.3
drop, 2.1.11, 5.6.4exclude fragment, 6.5.2
drug, 6.10exit, 1.5.1.19
     bank, 2.2, 2.2.8, 6.1explicit, 6.3.28
drugbank, 6.1export, 3.5.10
druglikeness, 6.4.9extra windows, 4.2
dsPocket, 2.1.8extract, 2.4.2, 6.1.3
easy rotate, 1.5.3.12     2D, 6.1.1
edit, 3.2.3.1     3d coordinates to spreadsheet, 6.1.3
     chemical moledit, 6.3.26     icb, 1.5.1.5
     ligand tools, 1.5.2.17     object icb, 2.4.2
     menu, 1.5.2     icb, 1.5.1.5
     molecular document, 5.6.1     pharmacophore, 6.5.5.4
     molecule, 6.4file, 1.5.1.3
     molt, 8.3     close, 1.5.1.13
     selection, 1.5.2.5     compatible, 1.5.1.10
     slide, 5.4.1     export, 1.5.1.12

     load, 1.5.1.7     shadow, 1.5.3.13, 4.10.2
     menu, 1.5.1grid, 6.3.3
     password, 1.5.1.11grob, 2.7.5, 3.3.4, 3.3.6, 3.3.7, 4.3
     preferences, 1.5.1.16group, 6.29.1
     quick image, 1.5.1.14     column, 7.1.43
     icb, 2.1.10groups, 6.7, 6.10, 6.11
     recent, 1.5.1.17guanidinium, 6.14
     bak, 1.5.2.11gui, 2.1.1, 2.7.4
filter, 8.2     menus, 1.5
     selection, 2.6.8     preferences, 2.7.4
find chemical, 6.3.32     tabs, 1.6
fit, 6.3.34h-bond, 3.2.3, 3.2.3.1, 3.2.3.2
fitting, 7.4.14halogen, 6.10.1
flexibility, 3.5.12hardware stereo, 1.5.3.7
fog, 1.5.3.5, 4, 4.10.1hbond, 3.2, 9.3.6
font, 2.7, 2.7.7, 3.2.3.1, 4.8.2, 4.8.3, 6.3.28, 7.1.37, 7.7.4header, 2.2.1.6, 7.4.7
     preferences, 2.7.7health, 3.5.11
form view, 7.1.5heatmap, 7.4.5
formal charge, 4.1.9, 6.14, 6.15hetero, 6.3.28
format, 7.1.2, 7.1.37hide, 7.1.36
formula, 6.4.9, 6.10high, 1.5.1.15
fragment, 6.3.35, 6.29.1     quality, 1.5.3.11
fragments, 6.7highlight new data, 6.3.7.1
free radical, 6.4.7histogram, 7.4, 7.4.1, 7.4.7, 7.4.9, 7.4.11, 7.4.12, 7.4.13, 7.4.14, 7.4.15, 7.4.16, 7.4.17, 7.4.19
freeze column, 7.1.27     bins, 7.4.3
     row, 7.1.28     options, 7.4.2
frequency, 6.3.35     bin.size, 7.4.2
front, 4.3.10, 4.13.1     bins, 7.4.3
full scene antialias, 1.5.3.10     color, 7.4.2
     screen, 1.5.3.8     source, 7.4.2
function, 7.1.25, 7.1.29     style, 7.4.2
functional.groups, 6.12     title, 7.4.2
general preferences, 2.7.5homology, 2.2.1.2, 2.2.5
generalselecttools, 2.6.1hover, 7.4.21
generator, 3.3.3     add columns, 6.3.4
getting started, 2     cluster center, 6.22.2
glasses, 4.6     color 2D by ph4, 6.5.5.5
google, 1.5.1.7     copy 2D, 6.3.16
     objects, 4.3.7          paste, 6.3.6
     3D, 1.6.6, 4.3.7     decompose, 9.4.9
graphical display tutorial, 9.1     duplicate chemicals, 6.3.21
               2D3D labels, 9.1.4     edit table, 6.3.17
               annotation, 9.1.2          tree, 6.22.4
               color representation, 9.1.1     excel, 6.3.10
               labels, 9.1.3     extract 3D ph4, 6.5.5.4
graphics, 2.1     filter, 6.3.12
     controls, 4     find replace, 6.3.13
     effects, 4.10     mark row, 6.3.14
     panel, 4.2     markush, 9.4.8
     preferences, 2.7.3          structure, 9.4.7

     properties, 6.3.19               combi library, 1.4.7
     reactions, 9.4.10               ph4, 1.4.4
     reorder, 6.22.3               plots, 1.4.8
     sdf, 6.3.9               sketch, 1.4.1
     show hide, 6.3.8               spreadsheets, 1.4.2
     sort column, 6.3.5               stereoisomers tautomers, 1.4.6
     standardize, 6.3.18          tutorials, 1.4
     table hyperlinks, 6.3.15     object, 3.1, 9.3.2
          print, 6.3.11     script, 7.1.37
          activeicm, 1.3icmPocketFinder, 3.5.14
               create molecular documents, 1.3.3icmjs, 5.16
                    slides, 1.3.2icmpocketfinder, 9.3.7
               getting started, 1.3.1id, 7.1.26
               ppt, 1.3.4identity, 2.2.1.2
               web, 1.3.5image, 2.1.14, 2.7, 2.7.5, 4.15.3, 5.6.3, 6.2, 6.2.6, 7.4.18
          chemical clusering, 6.22.1     advanced, 4.15.3
          icm browser convert display pocket, 1.1.4     preferences, 2.7.6
                    distances angles, 1.1.9     multiple, 1.5.1.7
                    get started, 1.1.1     quality, 1.5.3.11
                    graphical display, 1.1.2     quick, 1.5.1.14, 4.15.2
                         effects, 1.1.5images, 4.15
                    images, 1.1.7increment, 7.1.26
                    labels annotation, 1.1.6     id, 7.1.26
                    pro crystallographic tools, 1.2.6insert, 5.6.4
                         get started, 1.2.1     column, 7.1.25
                         graphics, 1.2.2     image, 5.6.3, 7.1.31
                         plots, 1.2.8          table, 7.1.31
                         sequence analysis, 1.2.7     row, 7.1.30
                         structure analysis, 1.2.3     script, 5.6.4
                         superimpose, 1.2.5install, 6.9.1
                         surfaces, 1.2.4interaction, 3.5.3, 6.6
                    selections, 1.1.3interactive, 9.2
                    superimpose, 1.1.8interrupt, 4.10.7.3
          search, 2.2     animation, 4.10.7.3
          use gui, 2.1invert selection, 7.1.22
html, 1.5.1.12, 2.3, 5.6.1, 5.6.6isee, 5.6.5
hybridization, 6.4.3, 6.5.1isis, 6.4.17
hydrogen, 3.2.3, 3.2.3.1, 3.2.3.2, 4.1.8, 6.4.3, 6.5.1, 9.3.6isotope, 6.4.3, 6.5.1
     bond, 3.2, 4.1.8, 6.6, 9.3.6iupac, 6.2.7, 6.3.20
          label edit, 3.2.3.1javascript, 5.16
               move, 3.2.3.2join, 6.25
     bonds, 3.2.4jpg, 4.15
     bond, 6.4.9     means, 7.7.1
hydrogens, 6.3.28key chemical, 6.4.10
     remove, 6.3.18keyboard mouse, 4.11
hyperlink, 5.6.1, 5.6.2, 7.1.37keystokes in chem-edit, 6.4.10
iSee, 1.5.1.5, 1.5.1.12, 2.1.10, 4.15.3, 9.2kmz, 1.6.6, 4.3.7
icb, 2.4.2, 2.5label, 2.7.7, 7.7.4
     chemist howto chemical search, 1.4.3     atoms, 4.8.2
               cluster, 1.4.5     color, 4.8.7

     residues, 4.8.3line, 2.7.5, 7.7.4
     sites, 4.8.6lineWidth, 2.7.3
     variables, 4.8.5links, 2.6.20
     2D, 1.6.3linux, 6.9.1
     3D, 1.6.3, 4.8.1lipinski rule, 6.27
     atom, 4.8.1list, 2.6.18
     atoms, 4.8.2load, 1.5.1.3, 1.5.1.17, 3.3.4, 3.3.6, 3.3.7
     color, 4.8.7     nmr model, 2.2.1.4
     custom, 4.8.8     protein structure, 3.1.1
     delete, 4.8.1, 4.8.9local databases, 8
     distance, 4.8.10     database.browse, 8.2
     drag, 1.5.3.16          edit, 8.3
     move, 1.5.3.16, 4.8.4          query, 8.4
     residue, 4.8.1          row, 8.3
     residues, 4.8.3lock, 4.3.10, 4.13.1, 6.3.31
     site, 4.8.1log, 7.4.9
     sites, 4.8.6logP, 6.4.9, 6.10
     variable, 4.8.1logS, 6.4.9, 6.10
     variables, 4.8.5logarithmic, 7.4.9
labeling, 4.8.1logout, 1.5.1.19
labels, 4.8, 6.3.28mac, 6.9.1
     distances, 4.8.10macros, 5.14
     tab, 1.6.3macroshape, 1.5.3.22, 4.3, 4.3.6
landscape, 2.7.6make, 4.10.7.1, 7.1.1
large chemical space, 9.4.4     animation, 4.10.7.1
     sdf, 6.1.2     molecular document, 5.6
layer, 4.14     molt, 8.1
layers, 4.14     selection, 2.6
learn, 6.17, 7.6     molecule, 1.5.1.1
least.squares, 7.4.14     object, 1.5.1.1
library, 6.28.4making molecular slides, 5.1
     reaction, 9.4.10     html, 5.6
ligand, 3.2.2, 6.6, 6.21, 6.21.1, 6.21.2     color, 7.4.12
     code, 2.2.1.3, 2.2.7map, 2.7.7, 3.3.4, 3.3.6, 3.3.7
     editor preferences, 1.5.2.18     cel, 3.3.5
     energetics, 6.21mark, 7.1.42
          conformational entropy, 6.21.1     row, 7.1.42
          strain, 6.21.2     shape, 7.4.11
     pocket, 3.2.4     size, 7.4.11
     receptor display, 3.2markush, 6.22.7, 6.28.1, 6.28.3, 6.29.1
          interaction, 6.6     library, 9.4.8
     surface, 3.2.2matched pair, 6.29.4
     pocket, 2.1.8          analysis, 6.29.4
     receptor.contact, 3.5.3materials, 1.6.6
ligand_pocket_interactions, 3.2.4max, 7.7.1
ligedit tab, 1.6.5maxColorPotential, 2.7.10
light, 1.6.2maximum common substructure, 6.22.6
     tab, 1.6.2mcs, 6.22.6
lighting, 4.3.9.4, 4.5     rgroup decomposition, 6.22.7
likeness, 6.10memory, 6.1.2

     chemistry, 1.5.14     slab, 4.11
     docking, 1.5.15     translate, 4.11
     homology, 1.5.13     z-rotation, 4.11
     molmechanics, 1.5.16     zoom, 4.11
     tools chemical search, 1.5.11movie, 4.16.1
          molecular editor, 1.5.12     making, 4.16, 4.16.2
     windows, 1.5.17     open, 4.16, 4.16.2
merge, 6.25mpeg, 4.16, 4.16.1, 4.16.2
     two sets, 6.25mpg, 4.16, 4.16.2
mesh, 3.2.1, 3.2.2, 3.3.4, 3.3.6, 3.3.7, 4.3, 4.3.9.1, 4.3.9.2, 4.3.9.4, 4.3.10, 4.3.11, 4.3.12, 4.13.1mpo, 6.27
     clip, 4.3.10multi panel, 4.2
     color lighting, 4.3.9.4     parameter optimization, 6.27
     options, 4.3.9     windows, 4.2
     representation, 4.3.9.3multiple receptor, 2.2.2
     save, 4.3.11navigate workspace, 2.6.10
     options, 4.3.9new icm session, 1.5.1.2
meshes, 4.3.2, 4.10.5     table, 7.1.1
     surfaces grobs, 4.3     table, 7.1.1
     tab, 1.6.6nmr model, 2.2.1.4
min, 7.7.1nof, 6.10.1
mmff, 6.4.16     chemical, 6.10.1
     type, 4.8.2non-contiguous selection, 2.6.18
mnSolutions, 2.7.10number of sp3, 6.10.1
mol, 6.2, 6.2.2, 6.2.4, 6.2.5, 6.2.6, 6.4.13numbers, 6.3.28
mol2, 6.2, 6.2.2, 6.2.4, 6.2.5, 6.2.6object, 2.1.11, 2.5, 9.3
molcart, 6.9, 6.9.1, 6.9.2, 6.9.3, 6.9.4, 6.9.5, 8objects, 3.1.2
     add database, 6.9.3     in table, 7.3
     administration, 6.9.5     in.table, 7.3
     installation, 6.9.1occlusion, 4.3.12, 4.10.5
     search, 6.9.4     shading, 4.3.12
     start, 6.9.2          effect, 4.10.5
molecular, 6.3.30, 6.3.31, 6.3.34, 6.3.35occupancy, 4.1.3, 9.3.10
     animations slides, 5     display, 2.2.1.5
     documents, 9.2oda, 3.5.13
     graphics, 4older version, 1.5.1.10
     table, 6.16.1omega, 4.8.5
     weight, 6.4.9open, 1.5.1.3, 2.4, 7.1.2
     editor, 6.4     file, 2.4
moledit, 6.4.8     password, 2.4.1
molskin, 4.3.2     with password, 1.5.1.4
molt, 8, 8.4     movie, 4.16, 4.16.2
monochrome, 6.3.28     password, 1.5.1.4, 2.4.1
mouse, 2.1.3, 4.11, 4.12optimal, 3.5.13
mov, 4.16, 4.16.2orange, 2.6.5
move, 1.5.3.19, 2.1.11, 2.1.13, 3.2.3.2, 4.3.9.1, 4.3.9.2, 4.12, 4.12.7     selection, 2.6.5
     mesh, 4.3.9.2origin, 4.8.11
     slide, 5.4.2other selection, 2.6.19
     structure, 4.12overlay, 9.3.3
     tools, 4package.activeicm, 5.13
     rotate, 4.11packing, 3.3.1

paste, 6.4.11, 6.4.17, 7.1.32     zoom translate, 7.4.15
pca, 7.5     axis, 7.4.13
pdb, 1.5.1.7, 2.2, 2.2.1.1, 2.2.7, 2.5, 9.3     display, 7.4.13
     html, 2.2.1.6     grid, 7.4.13
     preparation, 9.3.11     inline, 7.4.19
     search, 2.2.1, 2.2.1.2, 2.2.1.3, 9.3.1     logarithmic, 7.4.10
     recent, 1.5.1.18pls, 6.17, 7.6
     search, 1.6.4, 2.1.2png, 1.5.1.14, 4.15, 4.15.2, 5.6.3, 6.2, 6.2.6
pdbsearchfield, 1.5.2.13pocket, 2.1.8, 3.2, 3.2.1, 3.2.2, 3.5.14, 9.3.7
pdbsearchhomology, 1.5.2.15     surface, 3.2.1
pdbsearchidentity, 1.5.2.14     peptide, 2.1.8
pdbsearcsequence, 1.5.2.16     properties, 2.1.8
peptide, 2.3pocketome, 2.2, 2.2.2
perspective, 1.5.3.9, 4.10.6portait, 2.7.6
ph4, 6.5.5postscript, 2.7.6
     draw 2d, 6.5.5.1powerpoint, 9.2
          3d, 6.5.5.2ppt, 5.12, 5.14
     search, 6.5.5.3predict, 6.17, 7.6
pharmacophore, 6.3.35, 6.5.5.5preferences, 2.7
     2D, 9.4.6presentatio, 5.6.5
     3D, 9.4.5presentation, 5.7, 5.12
     clone, 6.5.5.2presentations, 5
     draw2D, 6.5.5.1press-and-hold to rotate, 6.4.8
     draw3D, 6.5.5.2primary aliphatic amines, 6.14
     edit, 6.5.5.1, 6.5.5.2principal component analysis, 7.5
     move, 6.5.5.2print, 4.7, 7.4.17, 7.7.3
     new, 6.5.5.2     plot, 7.4.17
     search, 6.5.5, 6.5.5.3, 9.4.5, 9.4.6printer.resolution, 2.7.6
phi, 4.8.5pro-drug, 6.20
picking, 4prodrug, 6.20
picture, 1.5.1.14, 2.1.14, 4.15.2, 5.6.3project, 1.5.1.5, 9.4.4.6
     tips, 2.1.14     close, 1.5.1.13
     chart, 7.4.6     rename, 1.5.1.9
pka, 6.14properties, 4.8.2, 6.10
planar, 3.5.7, 4.8.5property, 6.4.9
     angle, 3.5     monitor, 6.4.9
     angle, 4.9.2protect, 5.6.7
plane, 4.3.10, 4.13, 4.13.1, 4.14protein, 3.4.6
plot, 2.7, 2.7.8, 7.4, 7.4.1, 7.4.4, 7.4.7, 7.4.9, 7.4.11, 7.4.12, 7.4.13, 7.4.14, 7.4.15, 7.4.16, 7.4.17, 7.4.18, 7.4.19     health, 3.5.11
     axis, 7.4.9     structure, 3
     color, 7.4.12          analysis, 3.5
     function, 1.5.9, 1.5.9.1               closed cavities, 3.5.4
     grid, 7.4.13               contact areas, 3.5.3
     header, 7.4.7               distance, 3.5.6
     inline, 7.4.19               find related chains, 3.5.1
     logarithmic, 7.4.10               finding dihedral angle, 3.5.8
     mark, 7.4.11                    planar angle, 3.5.7
     preferences, 2.7.8               rama export, 3.5.10
     regression, 7.4.14               ramachandran plot, 3.5.9
     selection, 7.4.16               rmsd, 3.5.2

          tutorials, 9.3ratio.selection, 2.7.5
               analysis, 9.3.4reactions, 6.7, 6.28.5
               contact area, 9.3.5reactivity, 6.10.2
               convert, 9.3.2read, 1.5.1.3, 1.5.1.17, 2.4, 6.3.1
               hydrogen bond, 9.3.6     chemical, 6.1
               icmpocketfinder, 9.3.7          spreadsheet, 6.3.1
               search, 9.3.1     table, 7.1.2
               superimpose, 9.3.3     pdb, 2.1.2
     superposition, 3.4     table, 7
          select, 3.4.1reagent, 6.28.5
          sites by apf, 3.4.6rear, 4.3.10, 4.13.1
          superimpose 3D, 3.4.3recent files, 1.5.1.17
               grid, 3.4.5     pdb codes, 1.5.1.18
               multiple proteins, 3.4.4receptor, 3.2.1, 3.2.2, 6.6
protein-protein, 3.5.13recover, 1.5.2.11
proximity, 4.3.3, 4.3.4redo, 1.5.2.10, 6.4.11
psa, 6.4.9regresion, 7.4.14
psi, 4.8.5relationship, 7.6
pubchem, 6.1remove.explixit.hydrogens, 6.11
publication quality images, 4.3.2     salt, 6.11
pubmed, 2.2.1.7rename, 7.1.24
purple box, 1.5.3.23     colunn, 7.1.24
qs hydrogen bond, 3.2.3     project, 1.5.1.9
qsar, 6.17replace chemical, 6.3.32
     predict, 6.17representation, 1.5.3.19
quality, 1.5.1.15, 2.7.5residue, 2.7.7
query molt, 8.4     alternative orientaiton, 9.3.11
     processing, 6.5.3     range, 2.6.18
     setup, 6.5.1     content, 1.5.4
quick, 2.1.14residues, 3.2.1, 3.2.2
     image, 4.15.2resize, 4.3.9.1, 4.15.3
     start move structure, 2.1.3     mesh, 4.3.9.1
          read pdb, 2.1.2resolution, 2.2.1.3
          representation, 2.1.6restore, 1.5.2.11, 4.3.10, 4.13.1
          selection, 2.1.5     recent backup, 1.5.2.11
               level, 2.6.3rgroup, 6.28.4
          what is selected, 2.6.4ribbon, 1.6.1, 2.7.9, 4.1.3
     dispalay.distance, 4.9.1     preferences, 2.7.9
     start color, 2.1.7     style, 2.7.9
quit, 1.5.1.19     breaks, 4.1.3
     group, 6.22.7, 6.28.4     cylinders, 4.1.3
          table, 6.28.2     smooth, 4.1.3
     groups, 6.28.2     worm, 4.1.3
r-group, 6.22.7, 6.28.2ribbonColorStyle, 2.7.9
     decomposition, 6.22.7right, 2.1.12
     enumeration, 6.22.7     click, 2.1.12
racemic, 6.3.28, 6.16.4ring, 6.4.3, 6.4.6, 6.5.1
rainbow, 2.7.5, 4.8.15, 6.3.35rings, 6.3.28
ramachandran plot, 3.5, 3.5.10rmsd, 3.5, 3.5.2
range, 4.10.7.2rock, 1.5.3.15, 4.10.7, 4.10.7.1, 5

root mean square deviation, 3.5.2sdf, 6.2, 6.2.2, 6.2.4, 6.2.5, 6.2.6, 6.3.35, 6.9, 6.9.3, 8.1
rotate, 1.5.3.15, 2.1.3, 4, 4.10.7, 4.10.7.1, 4.12, 4.12.1, 4.12.2, 5, 6.3.34search, 6.9, 6.9.4, 8.2
     chemical, 6.3.34     chembl, 2.2.3
     when pasting, 6.4.8     drugbank, 2.2.8
     easy, 1.5.3.12     filter, 6.5.2
     speed, 4.10.7.2     in workspace, 1.5.2.4
rotating fragment in editor, 6.4.8     pdb, 2.2.1
rotation, 4.12.1          chemical, 2.2.1
row, 7, 7.1.21, 7.1.32, 7.1.42          ligand code, 2.2.7
     flag, 7.1.12     pocketome, 2.2.2
     height, 7.1.6     pubchem, 2.2.9
     mark, 7.1.12     surechembl, 2.2.4
     hide, 6.3.8     tab field, 2.2.1.3
     show, 6.3.8          pdb chemical, 2.2.1.1
ruler, 4.8.15               sequence, 2.2.1.2
rxn, 6.4.13     uniprot, 2.2.6
sali, 6.29.3     in.workspace, 1.5.2.4
     bridge, 9.3.6secondary aliphatic amines, 6.14
salts, 6.3.18     structure, 1.5.4, 4.1.3
sar, 6.22.7, 6.29select, 2.6.12, 2.6.13, 7, 7.1.42
     analysis, 6.29     a tree branch, 7.7.2
     table, 6.29.2     all, 2.6.14
save, 2.5, 4.3.11, 4.10.7.4, 6.2.3, 7.4.18, 7.7.3     amino acid, 2.6.13
     SMILES, 6.4.15     duplicates, 6.26
     chemical mol, 6.4.13     molecule, 2.6.12
          spreadsheet workspace, 6.2.1     neighbors, 2.6.15
          to chemical spreadsheet, 6.4.14          graphic, 2.6.16
     file, 2.5     object, 2.6.11
     image plot, 7.4.18     residue, 2.6.13, 2.6.18
     object, 2.1.9          by number, 2.6.18
     pdb, 2.5          number, 2.6.18
     project icb, 2.1.10     tree, 7.7.2
     slide, 5.4     atom, 2.1.5, 2.6.3
     smiles string, 6.4.15     graphical, 2.1.5, 2.6.3
     table, 7.1.20     object, 2.1.5, 2.6.3
     tree, 7.7.3     purple.box, 1.5.3.23
          sdf, 6.4.14     residue, 2.1.5, 2.6.3
     image, 1.5.1.15, 2.1.14     workspace, 2.1.5, 2.6.3
     object, 2.1.9selectall, 1.5.2.3
     password, 1.5.1.11selecting.neighbors, 2.6.16
     picture, 1.5.1.15selection, 2.6.4, 2.6.5, 2.6.21, 4.3.4, 6.4.11, 7.4.16, 7.7.2, 7.7.4
     project, 1.5.1.8, 1.5.1.9, 1.5.1.10, 2.1.10     clear, 1.5.2.7
     table.view, 7.1.7     neighbors, 1.5.2.8
saving, 1.5.1.8     alignment, 2.6.19
     project, 1.5.1.8     all, 1.5.2.3
scaffold, 6.13     alter, 2.6.7
scale, 2.7.5     atom, 1.5.2.5
screenshot, 4.16, 4.16.2     basic, 2.6.2
     movie, 4.16.2     change, 2.6.7
script, 2.3, 5.6.4, 5.6.5     clear, 1.5.2.7

     filter, 1.5.2.5, 2.6.8slab, 4.3.10, 4.13.1
     graphical, 2.6.16slice, 4.13
     invert, 1.5.2.6, 7.1.22slide, 4.10.7.4, 5.2, 5.3.1, 5.6.1
     level, 1.5.3.3     effects, 5.5
     mode, 1.5.3.4     movie, 4.16.1
     near atoms, 1.5.2.8          file, 5.2
     neighbors, 1.5.2.5, 1.5.2.8, 2.6.15, 2.6.17     navigation, 5.3.2
     object, 2.6.11     show, 5.3
     other, 2.6.19     blend, 5.5
     properties, 1.5.2.5     edit, 5.4.1
     range, 7.1.22     effect, 5.5
     residue, 1.5.2.5     smooth, 5.5
     row, 7.1.22     transition, 5.5
     sphere, 2.6.15slides, 4.16.1, 5, 5.1, 5.3
     spherical, 1.5.2.8smiles, 6.4.9, 6.10, 6.16, 6.16.2, 6.16.3
     superposition, 3.4.1smooth, 4.3.9.3
     table, 2.6.19, 7.1.22solid, 4.3.9.3
          elements, 7.1.22sort table, 1.5.10.4
     tools, 2.6.1, 2.6.2, 2.6.7, 2.6.8sorting compounds, 7.7
     whole, 2.6.11sp3, 6.10.1
     workspace, 2.6.9, 2.6.17spec, 1.6.2
selectioninvert, 1.5.2.6speed, 4.10.7.2
selections, 2.6split, 6.29.1
selectneighbors workspace, 2.6.17spreadsheet, 6.16.1
sequence, 1.5.4, 2.2, 2.2.1.2, 2.2.5, 2.2.6, 2.3, 9.3standard table, 7.1
     pattern, 2.2.1.2standardize, 6.11
set, 6.3.31     table, 6.11
     formal charges, 6.14start, 6.9.2
shading, 4.3.12stereo, 2.7.6, 4.6, 6.3.28, 6.4.2
shadow, 4.10.2     bond, 6.4.2
shell preferences, 2.7.10     hardware, 1.5.3.7
shift, 4.8.3     side-by-side, 1.5.3.6
shine, 1.6.2, 2.7.5stereoisomer, 6.16.4
shineStyle, 2.7.3stereoisomers, 6.19
show, 5.3.1, 7.1.36stick, 2.7.5
     hide column, 7.1.36stl, 4.7
side, 6.3.29stop, 4.10.7.3
     by side, 6.3.29store, 1.5.3.19, 4.10.7.4
               stereo, 1.5.3.6     current view, 1.5.3.19
sigmaLevel, 3.3.6, 3.3.7strain, 3.5.11, 6.21, 6.21.2
similarity, 6.24structure, 3.3.3, 7.6, 9.3
single, 6.4.10     analysis, 9.3.4
singlet, 6.4.7     representation, 4.1
sites, 3.4.6     smiles, 6.16.3
size, 3.2.3.1structures, 6, 6.1
sketch accents, 4.10.3style, 2.7.5
     markush, 6.28.1substituent, 6.28.2
     smiles, 6.4.12substructure, 6.9.4, 6.12
     accents, 1.5.3.14, 4.10.3     alerts, 6.12
skin, 1.6.1, 4.1.4superimpose, 1.5.8, 3.4.2, 3.4.6, 9.3.3

     Calpha, 3.4.3     action, 7.1.44
     arrange.grid, 3.4.5     alignment, 7.1.11
     backbone, 3.4.3     append, 7.1.40
     heavy atoms, 3.4.3     clone, 7.1.15
     multiple, 3.4.4     color, 7.1.9
superposition, 9.3.3     column, 6.3.4, 7.1.25, 7.1.29, 7.1.36
surface, 1.6.1, 2.7.5, 3.2.1, 3.2.2, 4.1.6, 4.3, 4.3.3, 4.3.4     columns, 6.3.8
     area, 3.5     compare, 6.3.22
     area, 3.5.5     copy, 6.3.6
surfaces, 3.2, 4.3.1, 4.3.2, 4.10.5     cursor, 7.1.44
symmetry, 3.3.1, 3.3.3, 9.3.8, 9.3.9     delete, 7.1.13, 7.1.16
system preferences, 2.7.11     double.click, 7.1.44
tab, 7.1.2, 7.1.20     edit, 6.3.17
     pdb, 1.6.4     excel, 6.3.10, 7.1.19
table, 2.3, 6.1.3, 6.3.24, 6.3.25, 6.3.28, 6.3.30, 6.3.31, 6.3.34, 6.3.35, 6.16.1, 7, 7.1.32, 7.1.37, 7.1.42, 7.4, 7.4.1, 7.4.4, 7.4.7, 7.4.9, 7.4.11, 7.4.12, 7.4.13, 7.4.14, 7.4.15, 7.4.16, 7.4.17, 7.7.1     filter, 6.3.12, 7.1.40
     alignment, 7.1.11     find-replace, 6.3.13
     clone, 7.1.15          to screen, 7.1.4
     color, 7.1.9     font, 7.1.10
     column format, 7.1.37     grid lines, 7.1.4
     copy, 7.1.33, 7.1.34     hide, 7.1.36
     delete, 7.1.16     hyperlink, 6.3.15
     edit, 7.1.23     insert, 7.1.30
     filter, 7.1.40     join, 1.5.10.5
     find, 7.1.8     label, 6.3.14
          replace, 6.3.32     landscape, 7.1.17
     font, 7.1.10     mark, 6.3.14
     grid, 7.1.5     merge, 1.5.10.5, 6.3.23, 6.25
     histogram, 7.4.1     mouse, 7.1.44
     insert, 7.1.25     name, 7.1.14
     layout, 7.1.5     new, 7.1.1
     learning, 7.6     options, 7.1.13
     mark, 7.1.12     orientation, 7.1.17
          row, 7.1.12     portrait, 7.1.17
     mouse, 7.1.44     print, 6.3.11, 7.1.4, 7.1.18
     navigation, 7.1.4     read, 7.1.2
     new column, 7.1.25     rename, 7.1.14
     plot, 7.4     right click, 7.1.13
     print, 7.1.18     row, 7.1.30
     rename, 7.1.14     rows, 1.5.10.7
     rightclick, 7.1.13     save, 6.3.9, 7.1.3, 7.1.4, 7.1.20
     save, 7.1.3     scale, 7.1.17
          selection, 7.1.3     scroll, 7.1.4
     search, 7.1.8     sdf, 6.3.9
     select, 7.1.22     select, 7.1.22
     setup, 7.1.17     setup, 7.1.17
     sort, 7.1.39     sort, 1.5.10.4, 6.3.5, 7.1.39
     split fragments, 6.3.33     standard, 7.1
     view, 7.1.5     view, 6.3.29
          save, 7.1.7     width, 7.1.4
     zoom translate, 6.3.30tables, 6.24, 7

tags, 2.6.21     molecular documents, 9.2
tautomer, 6.18tutorials, 9
tautomers, 6.18two, 6.3.24
temperature, 3.5.12unclip, 4.3.10, 4.13.1
template, 6.4.6undisplay, 2.1.4, 4.1.7
templates, 6.4.6     origin, 4.8.11
terminal, 6.3.28undo, 1.5.2.9, 2.7, 6.4.11
text, 2.7.7, 5.6, 5.6.1, 5.6.6, 6.3.28, 6.9.4, 7.4.20uniprot, 2.2.6
     search, 6.5.4unique, 6.3.28, 6.26
texture, 1.6.6unit, 3.3.3
three, 6.3.24unusual peptide, 2.3
threshold, 2.7.5     activeicm, 5.12
tier, 2.1.13user, 6.9.5
     racemic, 6.16user-defined groups, 6.4.5
tools 3D, 1.5.6uundisplay-all, 1.5.3.1
     analysis, 1.5.7van der waal, 4.8.14
     append rows, 1.5.10.7variable, 2.7.7
     extras, 1.5.9very large sdf files, 6.1.2
          plot function, 1.5.9.1video, 4.16, 4.16.1, 4.16.2
     superimpose, 1.5.8view, 1.5.3.19, 5.3.1, 6.3.28
     table, 1.5.10     animate view, 1.5.3.15
          Learn, 1.5.10.1     center, 1.5.3.20
          clustering, 1.5.10.3     color background, 1.5.3.18
          merge, 1.5.10.5     fog, 1.5.3.5
          predict, 1.5.10.2     macroshape, 1.5.3.22
tooltip, 7.4.21     menu, 1.5.3
     balloons, 7.4.21     mesh clip, 4.13.1
torsion, 4.12.6     perspective, 1.5.3.9
     angles, 4.12, 4.12.6     selection level, 1.5.3.3
toxscore, 6.10.2          mode, 1.5.3.4
trace, 4.1.10     shadow, 1.5.3.13
transitions, 5     sketch accents, 1.5.3.14
translate, 2.1.3, 4, 4.12, 6.3.30     slide show, 5.3.1
translation, 4.12.3, 7.4.15     tools, 1.5.3
transparent, 4.3.9.3     tree, 7.7.4
     background, 4.15.3     undisplay all, 1.5.3.1
tree, 6.22.7, 7.7.2, 7.7.3, 7.7.4virus, 3.3.3
     distance, 6.22.3volume, 6.4.9
     edit, 6.22.4wavefront, 1.6.6, 4.3.11
     reorder, 6.22.3web, 9.2
triplet, 6.4.7     browser, 1.5.1.12
tsv, 7.1.20weight, 6.10
tut analyze alternative orientations, 9.3.11weighted, 7.7.1
          occupancy, 9.3.10width, 7.1.21
          symmetry, 9.3.9window, 2.1.13
tut3e, 9.3.12windows, 2.1.13.1, 6.9.1
tutorial 2D pharmacophore, 9.4.6wire, 1.6.1, 2.7.5, 4.1.1
     3D pharmacophore, 9.4.5wireBondSeparation, 2.7.1
     chemical clustering, 9.4.3workspace, 2.1.4
          search, 9.4.2     panel, 2.1.4

     navigation, 2.6.10 
write, 2.1.14, 2.5, 7.4.18 
     excel, 6.2.3 
     image, 1.5.1.15 
     images, 4.15 
     pdb, 2.5 
     image, 1.5.1.15 
     object, 2.1.9 
     picture, 1.5.1.15 
     project, 1.5.1.8, 2.1.10 
     table, 7.1.3 
     ray, 1.5.5 
xi, 4.8.5 
xls, 6.2.3 
xlsx, 6.2.3 
xstick, 4.1.2 
zoom, 2.1.3, 4, 4.12, 4.12.4, 6.3.30, 7.4.15 

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