May 16 2012 Feedback.
Contents
 
Introduction
How Tos & Videos
Getting Started
Protein Structure
Molecular Graphics
Slides and Documents
ActiveICM
Movie Making
Sequences & Alignments
Protein Structure Analysis
Protein Superposition
Crystallographic Analysis
Homology & Modeling
3D Predict
Molecular Mechanics
Cheminformatics
Chemistry Menu
Docking
AQUASITES
3D Ligand Editor
 Setup Ligand and Receptor
 Preferences
 Pocket Surfaces
 Display Hbonds
 Energy Circles
 Re-Dock
 Fragment Linking
 Save docked ligand
 Edit Ligand
 Replacement Group
 Ligand Tethers
 Multiple Receptor Docking
 Dock apf
 Export Docking Project
Tables
Local Databases
Tutorials
FAQs
 
Index
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20.5 Display Atomic Energy Circles
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To display atomic energy circles:

About the Atomic Energy Circles: Good ligand-receptor interactions are highlighted by green spheres. Poor energy interactions are displayed as orange-->red stars - red being a major clash and a very poor energy contribution. Each stom is given an energy value relating to its contribution to the total receptor-ligand interaction energy. Low values colored green are considered favorable.


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