Sep 17 2008
Contents
 
Introduction
Overview - RECOMMENDED READING FOR NEW ICM USERS
File Menu
Graphics Move Tools
Display Tab
 Hydrogens
 Structure Representation
 H-Bond
 Coloring
  Color/BG
 Background
 Labeling
 Tethers
 Dist/Restraints
 Superimpose
 Display Clash
Light Tab
Labels Tab
PDB Search Tab
Meshes Tab
View Menu
Selections
Tables
Local DB
Sequences
Bioinfo Menu
Tools Menu - Xray
Tools Menu - 3D Predict
Tools Menu - Analysis
Tools Menu - Superimpose
Homology and Modelling
Working with Chemistry Tools
Chemsitry Menu
Docking
Ligand Editor
Animations, Slides, & Documents
ActiveICM
Movie Making
iSee Wizard
Frequently Asked Questions
Tutorial - Graphical Display
Molecular Document
Tutorial - Working with PDB Protein Structures
Tutorial - Working with Sequence Alignments
Tutorial - Ligand Binding Pocket Analysis
Tutorial - Homology and Modeling Tools
Tutorial - Crystallographic Analysis Tools
Tutorial - Working with Chemical Tables
Tutorial - Working with the Molecular Editor
Tutorial - Chemical Searching
Tutorial - Docking and Virtual Ligand Screening
 
Index
PrevICM User's Guide
5.4 Coloring
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[ Color/BG ]

To change the color of a structural representation such as CPK, Xstick, wire or ribbon.

  • Click and hold on the structural representation buttons in the Display tab.
  • Select a color by clicking color.

OR, if you wish to color by a particular parameter such as atom type, b-factor etc...

  • Right click on the structural representation buttons in the Display tab.
  • Select ..by-> option

To change the color of the whole of your displayed structure:

  • Click on the color palate displayed on the toolbar.
  • If you are not satisfied with these colors, click on the color wheel on the toolbar. A window as shown below will be displayed. Select the desired color by either clicking on one of the basic colors or by selecting the desired color on the right hand side of the window.

  • Once the desired color has been selected it can be added to custom colors for future use by clicking on the Add to Custom Colors button.
  • Click the OK button and the color will be applied to the structure.

To change the color of the desired representation by a defined structural characteristic:

  • Click and hold on the wire representation button and then click ..by->. A menu as shown below will be displayed.

  • Select the characteristic that you wish to color by and click on it.

5.4.1 Coloring Background


In order to change the color of your background:

  • Select View/Color background.

  • Click on the square of your desired color. If you are not satisfied with the color palate, click on the arrow next to the colors to customize a color.

OR

  • Right click on a color in the colors panel in the display tab.


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