To cut a vertical alignment block:

* An initial alignment must first be displayed in the graphical user interface. * Bioinfo/Cut Vertical Alignment Block * Enter the alignment from which you wish to cut from. * Enter the region of the alignment you wish to cut (from: to:). The easiest way to determine the region to cut is to display the ruler in the alignment. This is an option in the alignemtn view panel - see image below. * Click OK and the cut section will be displayed in a new alignment. <>