Jul 3 2008
Contents
 
Introduction
Overview - RECOMMENDED READING FOR NEW ICM USERS
File Menu
Graphics Move Tools
Display Tab
Light Tab
Labels Tab
PDB Search Tab
Meshes Tab
View Menu
Selections
Tables
Local DB
Sequences
Bioinfo Menu
Tools Menu - Xray
Tools Menu - 3D Predict
Tools Menu - Analysis
Tools Menu - Superimpose
Homology and Modelling
Working with Chemistry Tools
Chemsitry Menu
Docking
Ligand Editor
Animations, Slides, & Documents
ActiveICM
Movie Making
Frequently Asked Questions
Tutorial - Graphical Display
 Getting Started
 Making Graphical Selections
 Sequence Selections
 Spherical Selection
 Filter Selection
 Residue Propogate
 Molecule Representations
 Labeling and Annotation
Molecular Document
Tutorial - Working with PDB Protein Structures
Tutorial - Working with Sequence Alignments
Tutorial - Ligand Binding Pocket Analysis
Tutorial - Homology and Modeling Tools
Tutorial - Crystallographic Analysis Tools
Tutorial - Working with Chemical Tables
Tutorial - Working with the Molecular Editor
Tutorial - Chemical Searching
Tutorial - Docking and Virtual Ligand Screening
 
Index
PrevICM User's Guide
29.5 Filtering a Selection.
Next

In this example we will filter the selection made in the previous example and select only His, Asn, Gln and Pro residues surrounding the ligand.

  • Make a spherical selection surrounding the ligand in PDB structure *1MVC (See earlier example).
  • Click on the Filter graphical selection button.
  • Click on the Res tab
  • Select His, Asn, Gln and Pro residues.

NOTE: Only amino acid residues in the current selection will be available in the Filter.

Display the selected residues in wire format.

  • Change the selection from Atom to Residue.

  • Select the wire representation button in the display tab.


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Residue Propogate

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