Jul 23 2008
Contents
 
Introduction
Overview - RECOMMENDED READING FOR NEW ICM USERS
File Menu
Graphics Move Tools
Display Tab
Light Tab
Labels Tab
PDB Search Tab
Meshes Tab
View Menu
Selections
Tables
Local DB
Sequences
Bioinfo Menu
Tools Menu - Xray
Tools Menu - 3D Predict
Tools Menu - Analysis
 RMSD
 Contact Areas
 Closed Cavities
 Surface Area
 Distance
 Planar Angle
 Dihedral Angle
 Ramachandran Plot
Tools Menu - Superimpose
Homology and Modelling
Working with Chemistry Tools
Chemsitry Menu
Docking
Ligand Editor
Animations, Slides, & Documents
ActiveICM
Movie Making
Frequently Asked Questions
Tutorial - Graphical Display
Molecular Document
Tutorial - Working with PDB Protein Structures
Tutorial - Working with Sequence Alignments
Tutorial - Ligand Binding Pocket Analysis
Tutorial - Homology and Modeling Tools
Tutorial - Crystallographic Analysis Tools
Tutorial - Working with Chemical Tables
Tutorial - Working with the Molecular Editor
Tutorial - Chemical Searching
Tutorial - Docking and Virtual Ligand Screening
 
Index
PrevICM User's Guide
18.6 Planar Angle
Next

If you wish to find the planar angle between three atoms:

  • Select Tools/Analysis/PlanarAngle

  • Right click on the each of the three atoms which you wish to use, and select their name. The spaces next to First atom, Second atom, and Third atom should now contain the name of your atoms.

  • Click Apply to display the angle measure in the terminal window.


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Dihedral Angle

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