Sep 17 2008
Contents
 
Introduction
Overview - RECOMMENDED READING FOR NEW ICM USERS
File Menu
Graphics Move Tools
Display Tab
Light Tab
Labels Tab
PDB Search Tab
Meshes Tab
View Menu
Selections
Tables
Local DB
Sequences
Bioinfo Menu
Tools Menu - Xray
Tools Menu - 3D Predict
Tools Menu - Analysis
Tools Menu - Superimpose
Homology and Modelling
 Introduction
 Build
 Display Loops
 Loop
 Regul
 Refine SC
 Make Disulfide
Working with Chemistry Tools
Chemsitry Menu
Docking
Ligand Editor
Animations, Slides, & Documents
ActiveICM
Movie Making
iSee Wizard
Frequently Asked Questions
Tutorial - Graphical Display
Molecular Document
Tutorial - Working with PDB Protein Structures
Tutorial - Working with Sequence Alignments
Tutorial - Ligand Binding Pocket Analysis
Tutorial - Homology and Modeling Tools
Tutorial - Crystallographic Analysis Tools
Tutorial - Working with Chemical Tables
Tutorial - Working with the Molecular Editor
Tutorial - Chemical Searching
Tutorial - Docking and Virtual Ligand Screening
 
Index
PrevICM User's Guide
20.3 Display Loops
Next

Once you have built a model (see section Build Model) the loop regions or (inserted fragments) can be viewed by:

  • Click on the 'Homology' menu.
  • Select 'Display Loops'

The loop regions in the model will be displayed in red. Information regarding the RMSD in the loops are displayed in the Loop Table. If your template structure is still loaded this will be displayed in yellow as shown below.


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Loop

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