Jan 30 2012 Feedback.
Contents
 
Introduction
How Tos & Videos
Getting Started
Protein Structure
Molecular Graphics
Slides and Documents
ActiveICM
Movie Making
Sequences & Alignments
Protein Structure Analysis
Protein Superposition
Crystallographic Analysis
Homology & Modeling
3D Predict
Molecular Mechanics
Cheminformatics
Chemistry Menu
Docking
3D Ligand Editor
 Setup Ligand and Receptor
 Preferences
 Pocket Surfaces
  Pocket Surface
  Ligand Surface
 Display Hbonds
 Energy Circles
 Re-Dock
 Save docked ligand
 Edit Ligand
 Ligand linker
 Replacement Group
 Ligand Tethers
 Multiple Receptor Docking
 Dock apf
 Export Docking Project
Tables
Local Databases
Tutorials
FAQs
 
Index
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19.3 Pocket Display Options
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[ Pocket Surface | Ligand Surface ]

19.3.1 Display the receptor pocket surface


About the Receptor Pocket Surface: White=neutral surface Green=hydrophobic surface Red=hydrogen bonding acceptor potential Blue=hydrogen bond donor potential

19.3.2 Display the ligand pocket surface


About the Ligand Pocket Surface: White=neutral surface Green=hydrophobic surface Red=hydrogen bond acceptor potential Blue=hydrogen bond donor potential


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Display Hbonds

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