Aug 8 2008
Contents
 
Introduction
Overview - RECOMMENDED READING FOR NEW ICM USERS
 Load PDB
 Move
 Selections
 Selection Levels
 What is Selected
 Workspace Panel
 Display
 representation
 Color
 Pocket
 Save Object
 Saving an ICM Project File
 Window Menu
 Tips
 Sequences and Alignments
 Protein Structure
 Cheminformatics
File Menu
Graphics Move Tools
Display Tab
Light Tab
Labels Tab
PDB Search Tab
Meshes Tab
View Menu
Selections
Tables
Local DB
Sequences
Bioinfo Menu
Tools Menu - Xray
Tools Menu - 3D Predict
Tools Menu - Analysis
Tools Menu - Superimpose
Homology and Modelling
Working with Chemistry Tools
Chemsitry Menu
Docking
Ligand Editor
Animations, Slides, & Documents
ActiveICM
Movie Making
Frequently Asked Questions
Tutorial - Graphical Display
Molecular Document
Tutorial - Working with PDB Protein Structures
Tutorial - Working with Sequence Alignments
Tutorial - Ligand Binding Pocket Analysis
Tutorial - Homology and Modeling Tools
Tutorial - Crystallographic Analysis Tools
Tutorial - Working with Chemical Tables
Tutorial - Working with the Molecular Editor
Tutorial - Chemical Searching
Tutorial - Docking and Virtual Ligand Screening
 
Index
PrevICM User's Guide
2.3 How to Make Selections
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Making selections in ICM is an important skill to master (eg you may want to select a binding pocket for docking or a region of a molecule for coloring). The four levels of selection are:

  1. Atoms
  2. Residues
  3. Molecules
  4. Objects (multiple molecules comprising a PDB entry)

There are several ways of making selection in ICM. The simplest is to interact directly with the graphics window - right-click, hold and drag around the area of the screen you want to select. Alternatively, in the workspace window, expand the tree of molecules and chains until the relevant protein sequences is displayed. Then left click and drag tomark residues to form a selection.

See the chapter entitled Making Selections for more information.


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