var keys=new Array("&","2D labels","2D to 3D","3D chemical builder","3D font size","3D label","3D label",
"3D labels","3D mol file","3D plots intro","3D smoothing","3D superposition","3D transformations",
"3dxml","=","A","Abs","Abs","Acc","Acc","Acos","Acos","Acosh","Acosh","Adobe","Align",
"Align","Align sequence","Angle","Angle","Area","Area","Area residue contacts","Asin",
"Asin","Asinh","Asinh","Ask","Ask","Askg","Atan","Atan","Atan2","Atan2","Atanh","Atanh",
"Atom","Atom","Augment","Augment","Axis","Axis","B","BPMC","BPMC","Bfactor","Bfactor",
"Boltzmann","Boltzmann","Box","Box","Bracket","Bracket","C","CCP4","CONSENSUS","CONSENSUSCOLOR",
"CONSENSUS_strength","CONSENSUS_strength","Cad","Cad","Cad","Cad","Cad1","Cadalign",
"Ceil","Ceil","Cell","Cell","Charge","Charge","Chemical","Cluster","Cluster","Collada",
"Color","Color from gradient","Color image","Connolly surface","Consensus","Consensus",
"Corr","Corr","Cos","Cos","Cosh","Cosh","Count","Count","D","DAE","DE","DNA Representation",
"DNA alignment","DNA melting temperature","DNA views","Date","Date","Deletion","Deletion",
"Disgeo","Disgeo","Distance","Distance","Distance 2 alignments","Distance 2 matrices",
"Distance Dayhoff","Distance Tanimoto","Distance alignment","Distance as_","Distance as_ rarray",
"Distance atoms","Distance chemical","Distance chemical","Distance chemical","Distance dayhoff",
"Distance iarray","Distance iarray","Distance in alignment","Distance matrix","Distance matrix",
"Distance matrix","Distance multiple atomic","Distance rarray","Distance rarray",
"Distance tether","Distance tether","Distance tree","Distance tree cluster","E H",
"EDS server","EST-alignment","Eigen","Eigen","Energy","Energy","Error","Error","Error soap",
"Exist","Exist","Exist molcart","Existenv","Existenv","Exp","Exp","Extension","Extension",
"FILTER","FILTER","FILTER.Z","FILTER.Z","FILTER.gz","FILTER.gz","FILTER.uue","FILTER.uue",
"FTP","FTP","FTP.createFile","FTP.createFile","FTP.keepFile","FTP.keepFile","FTP.proxy",
"FTP.proxy","Field","Field","Field","Field user","File","File","Find","Find","Find chemical",
"Find chemical pattern","Find in array","Find in table","Find in table","FlexLM license info",
"Floor","Floor","Formula","GRAPHICS","GRAPHICS","GRAPHICS.atomLabelShift","GRAPHICS.atomLabelShift",
"GRAPHICS.atomValueCircles","GRAPHICS.ballRadius","GRAPHICS.ballRadius","GRAPHICS.ballRadius",
"GRAPHICS.ballStickRatio","GRAPHICS.ballStickRatio","GRAPHICS.chainBreakLabelDisplay",
"GRAPHICS.chainBreakStyle","GRAPHICS.clashWidth","GRAPHICS.clashWidth","GRAPHICS.displayLineLabels",
"GRAPHICS.displayLineLabels","GRAPHICS.displayMapBox","GRAPHICS.displayMapBox","GRAPHICS.dnaBallRadius",
"GRAPHICS.dnaBallRadius","GRAPHICS.dnaRibbonRatio","GRAPHICS.dnaRibbonRatio","GRAPHICS.dnaRibbonWidth",
"GRAPHICS.dnaRibbonWidth","GRAPHICS.dnaRibbonWorm","GRAPHICS.dnaRibbonWorm","GRAPHICS.dnaStickRadius",
"GRAPHICS.dnaStickRadius","GRAPHICS.formalChargeDisplay","GRAPHICS.grobLineWidth",
"GRAPHICS.grobLineWidth","GRAPHICS.hbondAngleSharpness","GRAPHICS.hbondBallPeriod",
"GRAPHICS.hbondBallStyle","GRAPHICS.hbondMinStrength","GRAPHICS.hbondRebuild","GRAPHICS.hbondStyle",
"GRAPHICS.hbondStyle","GRAPHICS.hbondWidth","GRAPHICS.hbondWidth","GRAPHICS.hetatmZoom",
"GRAPHICS.hydrogenDisplay","GRAPHICS.hydrogenDisplay","GRAPHICS.light","GRAPHICS.light",
"GRAPHICS.lightPosition","GRAPHICS.lightPosition","GRAPHICS.mapLineWidth","GRAPHICS.mapLineWidth",
"GRAPHICS.occupancyDisplay","GRAPHICS.occupancyRadiusRatio","GRAPHICS.quality","GRAPHICS.quality",
"GRAPHICS.quality","GRAPHICS.rainbowBarStyle","GRAPHICS.rainbowBarStyle","GRAPHICS.resLabelDrag",
"GRAPHICS.resLabelDrag","GRAPHICS.resLabelShift","GRAPHICS.resLabelShift","GRAPHICS.ribbonRatio",
"GRAPHICS.ribbonRatio","GRAPHICS.ribbonWidth","GRAPHICS.ribbonWidth","GRAPHICS.ribbonWorm",
"GRAPHICS.ribbonWorm","GRAPHICS.rocking","GRAPHICS.rocking","GRAPHICS.rockingRange",
"GRAPHICS.rockingRange","GRAPHICS.rockingSpeed","GRAPHICS.rockingSpeed","GRAPHICS.selectionLevel",
"GRAPHICS.selectionLevel","GRAPHICS.selectionStyle","GRAPHICS.selectionStyle","GRAPHICS.sketchAccents",
"GRAPHICS.stereoMode","GRAPHICS.stereoMode","GRAPHICS.stickRadius","GRAPHICS.stickRadius",
"GRAPHICS.stickRadius","GRAPHICS.surfaceDotDensity","GRAPHICS.surfaceDotSize","GRAPHICS.surfaceDotSize",
"GRAPHICS.surfaceProbeRadius","GRAPHICS.transparency","GRAPHICS.wormRadius","GRAPHICS.wormRadius",
"GRID","GRID","GRID.gcghExteriorPenalty","GRID.gcghExteriorPenalty","GRID.gpGaussianRadius",
"GRID.gpGaussianRadius","GRID.margin","GRID.margin","GRID.maxEl","GRID.maxEl","GRID.maxVw",
"GRID.maxVw","GRID.minEl","GRID.minEl","GROB","GROB","GROB.arrowRadius","GROB.arrowRadius",
"GROB.atomSphereRadius","GROB.atomSphereRadius","GROB.contourSigmaIncrement","GROB.relArrowHead",
"GROB.relArrowHead","GROB.relArrowSize","GROB.relArrowSize","GUI","GUI dialog customize programming",
"GUI plot","GUI.tableRowMarkColors","GUI.tableRowMarkColors","GUI.windowLayout","GUI.workspaceFolderStyle",
"GUI.workspaceFolderStyle","GUI.workspaceStyle","GUI.workspaceStyle","GUI.workspaceTabStyle",
"GUI.workspaceTabStyle","Getarg","Getenv","Getenv","Gradient","Gradient","Graphics",
"Grob","Grob","Group","Group","HTTP.proxy","HTTP.proxy","Header","Histogram","Histogram",
"I N","ICM desktop","ICM documents","ICM modules","ICM object","ICM residue library",
"ICM-shell","ICM-shell","ICM-shell intro","ICM.script","ICMHOME","ICMHOME shell variable",
"IMAGE","IMAGE.bondLength2D","IMAGE.color","IMAGE.color","IMAGE.compress","IMAGE.compress",
"IMAGE.gammaCorrection","IMAGE.gammaCorrection","IMAGE.generateAlpha","IMAGE.generateAlpha",
"IMAGE.lineWidth","IMAGE.lineWidth","IMAGE.lineWidth2D","IMAGE.orientation","IMAGE.orientation",
"IMAGE.paperSize","IMAGE.paperSize","IMAGE.previewResolution","IMAGE.previewResolution",
"IMAGE.previewer","IMAGE.previewer","IMAGE.printerDPI","IMAGE.printerDPI","IMAGE.quality",
"IMAGE.rgb2bw","IMAGE.rgb2bw","IMAGE.scale","IMAGE.scale","IMAGE.stereoAngle","IMAGE.stereoAngle",
"IMAGE.stereoBase","IMAGE.stereoBase","IMAGE.stereoText","IMAGE.stereoText","IMAGE.writeScale",
"I_out","I_out","Iarray","Iarray","Iarray","Iarray atom numbers","Iarray bits to integers",
"Iarray inverse","Iarray residue numbers","Iarray reverse","Iarray stack","Icm Options",
"IcmSequence","IcmSequence","Image","Image collection","Image frame by frame","Index",
"Index","Index chemical","Index element in array","Index regexp","Index string","Index table label",
"Index table selection","Index tree","Index unique elements","Indexx","Indexx","Info",
"Info","Info image","Insertion","Insertion","Integer","Integer","Integral","Integral",
"Interrupt","Interrupt","Introduction","LIBRARY","LIBRARY.men","LIBRARY.res","Label",
"Label","Length","Length","LinearFit","LinearFit","LinearModel","Log","Log","LogP",
"LogS","M_out","M_out","Map","Map","Markush structures","Mass","Mass","Match","Mathews",
"Matrix","Matrix","Matrix alignment","Matrix boundary","Matrix grob connectivity",
"Matrix histogram","Matrix new","Matrix residue areas","Matrix residue comparison",
"Matrix stack","Matrix sub","Matrix symmetrical","Matrix table","Matrix tensor","Max",
"Max","Max image graphic","MaxHKL","MaxHKL","Mean","Mean","Method","Min","Min","Mod",
"Mod","Mol","Mol","MolPSA","Moment","Moment of Inertia","Money","Money","NOE averaging",
"Name","Name","Name chemical","Name chemical property","Name close sequence","Name image",
"Name molcart","Name object parray","Name sequence","Name soap","Name string","Name tree",
"Namex","Namex","Namex image","Namex sequence","Newick tree format","Next","Next",
"Next covalent neighbors","Nof","Nof","Nof chemical","Nof distance","Nof library",
"Nof molcart","Nof soap","Nof tree","Norm","Normalize","NotInList","O R","OBJECT",
"OBJECT","Obj","Obj","Occupancy","Occupancy","PBS","PLOT","PLOT","PLOT.Yratio","PLOT.Yratio",
"PLOT.box","PLOT.box","PLOT.color","PLOT.color","PLOT.font","PLOT.font","PLOT.fontSize",
"PLOT.fontSize","PLOT.labelFont","PLOT.labelFont","PLOT.lineWidth","PLOT.lineWidth",
"PLOT.logo","PLOT.logo","PLOT.markSize","PLOT.markSize","PLOT.numberOffset","PLOT.numberOffset",
"PLOT.orientation","PLOT.orientation","PLOT.rainbowStyle","PLOT.rainbowStyle","PLOT.seriesLabels",
"PLOT.seriesLabels","PLS error","PLS models","Parray","Parray","Parray-object","Path",
"Path","Pattern","Pattern","Pi","Pi","Polar Surface Area","Potential","Potential",
"Power","Power","Predict","Probability","Probability","Profile","Profile","Property",
"Putarg","Putenv","R-groups","REBEL","REBEL faq","RG file","R_2out","R_out","R_out",
"Radius","Radius","Random","Random","Random string","Rarray","Rarray reverse","Rarray sequence projection",
"Rarray.alignment projection","Rarray.alignment strength","Rarray.property assignment",
"RarrayAlignment","Rarrayinverse","Real","Real array","Reference","Reference Guide",
"Remainder","Remainder","Replace","Replace","Replace chemical","Replace exact","Replace regexp",
"Replace simple","Res","Res","Res","Resali","Resolution","Rfactor","Rfactor","Rfree",
"Rfree","Ring","Rmsd","Rmsd","Rmsd of subset","Rot","Rot","S","SAR analysis","SAR analysis",
"SC","SITE","SITE","SITE.defSelect","SITE.defSelect","SITE.labelOffset","SITE.labelOffset",
"SITE.labelStyle","SITE.labelStyle","SITE.labelWrap","SITE.labelWrap","SITE.showSeqSkip",
"SITE.showSeqSkip","SITE.wrapComment","SITE.wrapComment","SLN notation","SMARTS",
"SMARTS","SMARTS","SOAP","SOAP","SOAP","SOAP request message","SSSR","S_out","S_out",
"Sarray","Sarray index","Score","Score","Score alignment","Score conservation","Score model",
"Score overlap","Score predictions","Score sequence","Select","Select","Select break",
"Select by atom property","Select by nmembers","Select by string","Select expand",
"Select fix","Select graphical","Select neighbors","Select_by atom numbers","Select_by_text",
"Select_lists","Select_patching","Select_projection","Sequence","Sequence","Sequence array",
"Sequence(dna reverse)","Shuffle","Shuffle","Sign","Sign","Simulations","Sin","Sin",
"Sinh","Sinh","Site","Site","Slide","Smiles","Smooth","Smooth","Smooth","Smooth",
"Smooth","Smoothrs","SoapMessage","Sort","Sphere","Sphere","Split","Split","Split chemical",
"Split multisep","Split regexp","Split tree","Sql","Sql","Sqrt","Sqrt","Srmsd","Sstructure",
"Sstructure","String","String","String","String alternative","String mol","String selection",
"String slide gui","String substring","String.chemical formula","Sum","Sum","Sum chemical",
"Sum image","Swissprot","Symgroup","Symgroup","T","TOOLS","TOOLS.edsDir","TOOLS.pdbReadNmrModels",
"TOOLS.superimposeMaxDeviation","TOOLS.superimposeMaxIterations","TOOLS.superimposeMinAtomFraction",
"TOOLS.tsWeight","Table","Table","Table alignment numbers","Table distance","Table matrix",
"Table model","Table pairs","Table stack","Table url_decoder","Table(alignment)",
"Table(stack)","Tan","Tan","Tanh","Tanh","Tanimoto","Tanimoto distance","Tanimoto distance matrix",
"Temperature","Tensor","Tensor","Time","Time","Tointeger","Tolower","Tolower","Toreal",
"Torsion","Torsion","Tostring","Toupper","Toupper","Tr123","Tr321","Trace","Trace",
"Trans","Trans","Transform","Transform","Transpose","Transpose","Trim","Trim","Trim sequence",
"Turn","Turn","Type","Type","Type molcart","Type soap","U Z","Unique","Unix","Unix",
"Uppsala","Uppsala server","V_","Value","Value","Value soap","Vector","Vector","Vector",
"Vector","Vector.symmetry transformation","Vectorproduct","Vectorsymmetrytransformation",
"Version","Version","View","View","Volume","Volume","WEBAUTOLINK","WEBAUTOLINK","WEBLINK",
"WEBLINK","Warning","Warning","Wavefront format","Xyz","Xyz","Xyz axes","Xyz chemical match",
"Xyz fract","Xyz mesh","Xyz points","Xyz transformed xyz","Xyz vector2matrix","ZEGA",
"ZEGA intro","_NAME","_chemBatch","_confGen","_dockScan","_macro","_macro file","_startup",
"_startup file","_startup.icm","a_","abbr","abbreviations","absolute to cell x y z",
"accFunction","accFunction","acceptor","access large sdf file","accessMethod","accessMethod",
"accessible residues","accessible surface","accessible surface","accessing sections",
"accuracy","activate fog","active alignment","active document","active tab","add",
"add column","add column function","add matrix","add slide","add table","add table row",
"addBfactor","addBfactor","adding atoms to non-ICM objects","adding columns to table",
"adding hydrogens","adding in place","adding to slideshow","admet selection","advanced chemical search",
"advanced operations","advanced ops","ali_seq_project","alias","alias","align","align",
"align 3D","align 3D faq","align 3D heavy","align 3D heavy","align 3D how to","align chemical",
"align fragments","align fragments","align intro","align number","align res numbers",
"align sequence","align sequences","alignMethod","alignMethod","alignMinCoverage",
"alignMinCoverage","alignMinMethod","alignOldStatWeight","alignOldStatWeight","alignSS",
"alignTwoSequences","aligned residues","alignment","alignment","alignment as table",
"alignment block length","alignment by secondary structure","alignment cleaning",
"alignment color by property","alignment coloring","alignment editor","alignment editor",
"alignment extraction","alignment gap format","alignment intro","alignment projection",
"alignment projection","alignment projection","alignment score","alignment sequence reordering",
"alignment strength","alignment structural","alignment structural","alignment to sequence transfer",
"alignment to text conversion","alignment weighted","alignment.gapExtension","alignment.gapOpen",
"alignment_as_text","aliphatic amines","all","all","all torsions table","all torsions table",
"alpha","alpha","alpha","alpha","alpha channel","alternative flag","amber","amber",
"amino acid","amino acid","amino acid","and","angles","angular hbond dependence",
"animated story","animation","animation","animation","annotation","append","append a tables",
"append column","append command","append sequence","append sequence to group","append stack",
"append stack","append tables","append tables by shared column","appending","appending an element",
"appending menu items","appending representations to a slide","appending rows to matrix",
"area under curve","arguments","arithmetic operations","arithmetic operations","arithmetics",
"arithmetics","array","array","array assignment","array derivative","array overlap",
"array parray","array size","array.subset","arrow from selection","arrow length",
"as2_out","as2_out","as_","as_graph","as_graph","as_graph","as_out","as_out","assign",
"assign","assign ring conformation to template","assign sstructure","assign sstructure segment",
"assign sstructure segment","assignment","assignment","assigns structure","atom",
"atom","atom","atom code file","atom coordinates","atom label font","atom name","atom pairs",
"atom pairs","atom proximity to surface","atom selection by number","atom type","atom user field",
"atomLabelStyle","atomLabelStyle","atomSingleStyle","atomSingleStyle","atomic coordinate transfer",
"atomic solvation contributions","atoms.alternative position","atoms.selecting","atoms.translate",
"attenuation by occupancy","auc enrichment","auto saving log","autoSavePeriod","autoSavePeriod",
"avi","axis","axis","axisLength","axisLength","background","ball","ball","base","base",
"batch chemical processing","batch docking","beta","beta","bfactor circles","binary file table of contents",
"binary files","bind key","binding energy","binding energy","binding pocket finding",
"binding pockets","binding site analysis","biological symmetry","bit vector","bits to integers compression",
"blast files","blast-formatted database","blast-formatted database","blending","blending images",
"bold","bond angle bending","bond stretching","bond to protein","bonded atoms","born radii",
"boundary element","boundary element","boundary element matrix","box","break","break",
"brightness","build","build","build atom","build column","build faq","build from string",
"build helix","build helix","build how to","build hydrogen","build hydrogen","build loop",
"build loop","build model","build model","build molcart","build sequence","build smiles",
"build smiles","build string","build string","built-in functions","by atoms","by contact surface",
"by molecule","by number of bonds","by variables","calcArea","calcBindingEnergy",
"calcBindingEnergy","calcDihedralAngle","calcDihedralAngle","calcEnergyStrain","calcEnergyStrain",
"calcEnsembleAver","calcEnsembleAver","calcMaps","calcMaps","calcPairSeqIdsFromAli",
"calcPepHelicity","calcPepHelicity","calcProtUnfoldingEnergy","calcProtUnfoldingEnergy",
"calcRmsd","calcRmsd","calcSeqContent","calcSeqContent","calc_nosauc","calculate phases",
"calculate phases","call","carboxylic acid","cartesian cooridnates","cartridge","cavities",
"cavity","cavity","cavity analysis","cavity analysis","ccp4 maps","cd","cell axis vectors",
"center","center","center","chain breaks","chain breaks","chain breaks","chain symbol",
"change atom position","change unix directory","changing local stick radii","changing surface dot size",
"charge","charge","charge compounds","charge.change","chem formula","chemSuper3D",
"chemical","chemical","chemical","chemical 2D drawings","chemical SMARTS search",
"chemical database","chemical decomposition","chemical decomposition","chemical descriptors",
"chemical diversity","chemical drawing","chemical drawing quality","chemical formula",
"chemical fragment counting","chemical keys","chemical match coordinates","chemical matching",
"chemical matching","chemical matching","chemical matching","chemical matching","chemical models",
"chemical modification","chemical modification","chemical modification","chemical name",
"chemical normalization","chemical normalization rules","chemical pattern","chemical pattern",
"chemical pattern search","chemical reaction product generation","chemical search",
"chemical search","chemical search","chemical similarity","chemical spreadsheet",
"chemical spreadsheet","chemical spreadsheet","chemical spreadsheet","chemical spreadsheet",
"chemical spreadsheet","chemical structure from smiles","chemical substructure","chemical substructure mask",
"chemical superposition","chemical superposition","chemical table","chemical view",
"chemistry","chemistry","chiral isomer generation","chirality","chirality","choosing ligands",
"cif","clamp values to range","clashThreshold","clashThreshold","class labels","clear",
"clear","clear graphical selection","clear screen","click and lock","clipping plane",
"clipping plane","closest sequence","closest value","cluster","cluster center","cluster centers",
"cluster selection","cluster tree","cluster tree size","clustering","clustering",
"clustering","clusters","clusters","cnMethodAverage","cnWeight","cnWeight","coil",
"coil","color","color","color accessibility","color background","color background example",
"color background example","color by accessibility","color by accessibility","color by alignment",
"color by alignment","color by atom contributions","color by bfactor","color by bfactor",
"color by charge","color by charge","color by electrostatic potential","color by hydrophobicity",
"color by hydrophobicity","color by pharmacophore","color by potential","color by shape depth",
"color chemical","color chemical","color file","color grob","color grob by atom selection",
"color grob by atoms","color grob map","color grob matrix","color grob potential",
"color grob unique","color label","color label","color map","color map","color maps by value",
"color molecule","color names","color object","color specification","color surface by conservation",
"color volume","color volume","column","column","column function","column selection",
"combinatorial compounds","combinatorial libraries","combinatorial libraries","combine PDB",
"combine transformations","combine transformations","combining plots","combining receptor and ligand stacks",
"command","command","command","command line editing","command line help","command line options",
"command word list","command word list","commands","communication protocols","comp",
"comp_matrix","comp_matrix","comp_matrix","comp_matrix","compare","compare","compare",
"compare angles","compare atom","compare by rmsd without superposition","compare chemical tables",
"compare patch only","compare rmsd","compare surface","compare variables","compareMethod",
"comparing two sarrays","comparison operations","complete view","compound accessibilities",
"compound array","compress","compress binary","compress conf","compress grob","compress grob",
"compress in place","compress objects","compress stack","compress stack","compressed table view",
"conditional buttons","conditional string","conf","conf","conf","conf","conf","conf",
"conf data","confgen","configuration","configure.memory usage","conformation comparison",
"conformational generator","conformational generator","conformational interpolation",
"conformational stack","conformational stack","conformational stack","conformational stack compression",
"conformational stack file","conformational transition","conformer storage","conformer storage",
"conformers","connect","connect","connect molcart","consensus","consensus coloring",
"consensus coloring","consensus definitions","consensusStrength","consensusStrength",
"conservation","conservation","constant","constants","contact areas","continue","continue",
"contour surfaces","contouring density","contrast","conversion to real array","convert",
"convert","convert","convert","convert 3D to chemical","convert 3D/0D to 2D","convert ICM object to PDB",
"convert and reroot","convert and reroot","convert chemical 3D","convert chemical 3D and optmimize geometry",
"convert comp","convert comparison","convert fragments","convert mol","convert object 3D and optmimize geometry",
"convert object macro","convert pdb","convert pdb","convert to 3D","convert to ICM object",
"convert to iarray","convert to icm-object","convert to integer","convert2Dto3D",
"convert3Dto3D","convertObject","converting a chemical","converting a pdb-chemical",
"converting alignment to table","converting chemicals","converting table columns into matrix",
"converting to","cool","cool","cool pictures","cooling schedule","coordinate frame",
"coordinate frame","copy","copy chemical image","copy file","copy site","copy site",
"correlation matrix","covalent bound count","covalent neighbors","covalently attached molecule",
"cpk","cpk","create a covalent bond","create pharmacophore","creating a local patch object",
"credits","crypt","crypt","crystal axis vectors","crystal symmetry transformation",
"crystal symmetry transformation","crystal symmetry transformations","crystallographic occupancy",
"crystallographic symmetry intro","crystallography","csv format","csym","current",
"current","current icm-process number","current map","current map","current object",
"current object","current working directory","cursor action","customization","customization",
"cut and paste chemicals","cut and paste chemicals","cyclic temperature protocol",
"cz32","database","database","database browser","database connection","database file",
"database import","date","date array","dcMethod","dcMethod","dcWeight","dcWeight",
"decomposition","decomposition","defCell","defCell","defSymGroup","defSymGroup","default atom colors",
"default value","define axis","define axis","defining space box","delete","delete 3D graphics panel",
"delete alias","delete alias","delete array element","delete array index","delete array selection",
"delete atom","delete atom","delete bond","delete bond","delete boundary","delete boundary",
"delete chemical","delete chemical fragment","delete chemical selection","delete chemical selection",
"delete class","delete conf","delete conf","delete directory","delete directory",
"delete disulfide bond","delete disulfide bond","delete drestraint","delete element",
"delete file","delete from array","delete hydrogen","delete hydrogen","delete label",
"delete label","delete label","delete label chemical","delete link","delete link",
"delete map","delete map","delete molcart","delete molecule","delete molecule","delete object",
"delete object","delete parray","delete parray element","delete peptide bond","delete peptide bond",
"delete plot","delete salts","delete selection","delete selection","delete sequence",
"delete sequence","delete session","delete session","delete shell object","delete shell object",
"delete site","delete sstructure","delete sstructure","delete stack","delete stack",
"delete stack object","delete system","delete table","delete table","delete table rows",
"delete term","delete term","delete tether","delete tether","delete tree","delete variable",
"delete views","deleted backbone","deleted restraint","deleting sites by number",
"delphi","density correlation","density correlation","density correlation","density fitting",
"density in unit cell","densityCutoff","densityCutoff","dependent columns","depth cueing",
"depth cueing","depth cueing","depth-cueing","desolvation","dialog generation","dialog in html documents",
"dialog in tables","dialog scripting","dielConst","dielConst","dielConstExtern","dielConstExtern",
"dielectric constant","diff","dihedral angle","dihedral angle calculation","dihedral angle calculation",
"directory","directory","directory","display","display","display GUI window","display box",
"display clash","display clash","display clash","display drestraint","display drestraint",
"display field","display from script","display gradient","display gradient","display grob",
"display grob","display grob label","display gui","display hbond","display hbond",
"display label","display label","display map","display map","display map","display model",
"display model","display new","display new","display off-screen","display offscreen",
"display origin","display origin","display ribbon","display ribbon","display rotate",
"display site","display site","display skin","display skin","display slide","display stack",
"display string","display string","display surface","display surface area","display tethers",
"display tethers","display trajectory","display trajectory","display volume","display window",
"display window","display window","distance","distance","distance","distance averaging",
"distance contact-based","distance contact-based","distance geometry","distance geometry",
"distance matrix","distance matrix","distance matrix between stack conformations",
"distance restraint","distance restraint file","distance restraint type file","distance restraints",
"distances","distribution","distribution comparison","disulfide bond","diverse subset",
"dividing chemical into individual molecules","dna to protein sequence translation",
"dna translate","dockScan","docking","docking intro","docking result viewing","docking simple models",
"docking simple models","docking timing","docking with template","documents","dominant color",
"donor","dot plot intro","dots","dotted surface","double click action","drestraint",
"drestraint","drestraint","drestraint generate from structure","drestraint global weight",
"drestraint set","drestraint type","drestraint type","drop","drop","ds3D","ds3D",
"dsCellBox","dsCellBox","dsChem","dsChem","dsCustom","dsCustom","dsPocket","dsPocket",
"dsPropertySkin","dsPropertySkin","dsPrositePdb","dsPrositePdb","dsRebel","dsRebel",
"dsRebel","dsSeqPdbOutput","dsSeqPdbOutput","dsSkinLabel","dsSkinLabel","dsStackConf",
"dsStackConf","dsVarLabels","dsVarLabels","dsXyz","dsXyz","dump database","dynamic gui",
"ecepp","ecepp","edit","edit","eds files","electro intro","electroMethod","electroMethod",
"electron density","electron density","electron density","electron density around selection",
"electron density map generation","electron density maps","electrostatic boundary matrix",
"electrostatic isopotential surfaces","electrostatic potential","electrostatic solvation",
"electrostatic surface","electrostatic troubleshooting","electrostatics intro","ellipsoid",
"elseif","elseif","endfor","endfor","endif","endif","endmacro","endmacro","endwhile",
"endwhile","energetics","energy terms","ensemble average","ensemble average","entropy of alignment",
"entry atom","enumerate","enumerate","enumerate","enumerate chiral","enumerate library",
"enumerate tautomer","enumeration","eps files","error SOAP services","error ignoring",
"error/warning bits cleanup","errorAction","errorAction","et vrestraint vs_var","evalSidechainFlex",
"evalSidechainFlex","evol tree intro","evolutionary tree intro","exact","exact","exact match",
"example scripts","example scripts","exit","exit","exitSeslogStyle","expanding substructure match",
"export","export animation","exporting sdf","expression shortcuts","expressions comparison",
"expressions.arithmetics","expressions.assignment","expressions.comparison","expressions.logical",
"extending to bonded hydrogens","extending to bonded terminal atoms","external process",
"extracting from Markush","extracting icm script arguments","extracting stack from object",
"ez25","factor","factor","false negatives","family","faq","faq cheminformatics","faq chemsuper",
"faq molcart dump","faq molcart query","faq multiple chem overlay","faq residue table",
"fast Fourier transform","fast sequence search","fasta","fasta","feature table","features in sequences",
"ffMethod","field name","file","file exists","file list","file.length","file.object origin",
"file.permissions","file.time modified","file.type","files","files","filter","filter",
"filter functions","filtering table rows","find","find alignment","find alignment",
"find and replace a chemical pattern","find and replace chemical fragment","find chemical",
"find chemical pattern","find chemical substructure","find database","find database",
"find database fast","find family of commands","find in sarray","find molcart","find molcart",
"find molcart","find molecule","find molecule","find pattern","find pattern","find pdb",
"find pdb","find pharmacophore","find pharmacophore","find prosite","find prosite",
"find table","find table","findFuncMin","findFuncMin","findFuncMin","findFuncZero",
"findFuncZero","findSymNeighbors","findSymNeighbors","find_related_sequences","finding long covalent bonds",
"fit to density","fix","fix","fixed branches","flattening 3D molecule","flow control",
"fog","fog","fog","fog","fog color","fogStart","fold search","foldbank.db","foldbank.db",
"folding procedure","folding procedure","font","font size","font size","font specification",
"for","for","fork","fork","formal charge","formal charge","formatdb","fprintf","fprintf",
"fractional coordinates","fractional to abs coordinates","fragmented molecule","frame",
"frame","fullscreen","function","functions.selecting in objects","gap expansion",
"gapExtension","gapExtension","gapFunction","gapFunction","gapOpen","gapOpen","gcMethod",
"generate intermediate conformers","generating movie images","genomics","genomics clustering",
"genomics intro","geometry optimization","get started","getting data from outside",
"getting started","global","global","glossary","glossary","goto","goto","gp term",
"gp term","gpWeights","graph matching","graphical box","graphical row selection",
"graphical selection","graphics","graphics","graphics","graphics","graphics card",
"graphics controls","graphics controls","graphics controls","graphics controls","graphics exists",
"graphics intro","graphics intro","graphics intro","graphics learning","graphics learning",
"graphics.attributes","graphics.fogStart","graphics.view vector","greedy matching",
"grid potentials","grob","grob","grob coloring","grob files","grob inside-out flip",
"grob normal directions","grob.translate","group","group","group by column","group column",
"group replacement","group sequence","group sequence","group sequence unique","group sequence unique",
"group table","group table","grouping table by a column","gui","gui","gui","gui exists",
"gui functions","gui panels","gui programming","gui programming","gui programming",
"gzip files","haze","hb","hbCutoff","hbCutoff","hbond","hbond","hbond","hbond","hbond",
"hbond color","hbond display","hbond display","hbond energy","hbond list","hbond.show",
"hbondMinStrength","hbonds faq","hbonds how to","header","helical axis","helicity",
"helix content calculation","help","help","help","help","help browser","help commands",
"help commands","help functions","help functions","help getting","help word","help.getting",
"hidden blocks","hidden display","hide hydrogens","hide stack in object","hierarchical",
"highEnergyAction","highEnergyAction","his-tags","histogram","histogram 2D","history",
"history","history","history delete","history of ICM","homodel","homodel","homology modeling",
"homology modeling","homology modeling","homology modeling","homology modeling","homology modeling faq",
"homology modeling intro","homology output","homology steps","how to export a molcart table",
"html","html","html","html document order","html-formatted text","hydration","hydration parameters",
"hydrogen bond","hydrogen bond","hydrogen bond","hydrogen bond","hydrogen bonding parameters",
"hydrogen bonding.cutoff","hydrogen bonds","hydrogen display","hydrogen placement",
"hydrophobicity profile","hydrophobicity profile","iProc","iProc","iSee","i_out",
"i_out","iarray","iarray","iarray","iarray","iarray","iarray making","icb files",
"icm algorithms","icm application refs","icm applications literature","icm archive",
"icm arguments","icm binary","icm branching","icm branching","icm commands","icm commands",
"icm controls","icm flags","icm functions","icm functions","icm graphics","icm history",
"icm jumps","icm jumps","icm learning","icm learning","icm loops","icm loops","icm macros",
"icm macros","icm main refs","icm menus","icm method literature","icm molecules",
"icm molecules","icm object file","icm session","icm shell","icm support","icm table",
"icm table","icm.ali","icm.ali","icm.all","icm.all","icm.bbt","icm.bbt","icm.bst",
"icm.bst","icm.cfg","icm.cfg","icm.clr","icm.clr","icm.cmp","icm.cmp","icm.cn","icm.cn",
"icm.cnf","icm.cnf","icm.cnt","icm.cnt","icm.cod","icm.cod","icm.col","icm.col","icm.gro",
"icm.gro","icm.hbt","icm.hbt","icm.hdt","icm.hdt","icm.htm","icm.htm","icm.iar","icm.iar",
"icm.map","icm.map","icm.mat","icm.mat","icm.ob","icm.ob","icm.pdb","icm.prf","icm.prf",
"icm.rar","icm.rar","icm.res","icm.res","icm.rs","icm.rs","icm.rst","icm.rst","icm.sar",
"icm.sar","icm.se","icm.se","icm.seq","icm.seq","icm.tab","icm.tab","icm.tot","icm.tot",
"icm.trj","icm.trj","icm.var","icm.var","icm.vwt","icm.vwt","icmCavityFinder","icmCavityFinder",
"icmMacroShape","icmPmfProfile","icmPmfProfile","icmPocketFinder","icmPocketFinder",
"icmscript","icmscript arguments","if","if","ignoring swiss secondary structure",
"image","image","image annotation","image annotation","image center","image center",
"image format","image high quality","image parray","image resolution","image rotation",
"imposing tether","in place","in place ops","incidence","increasing the number of shell variables",
"increment charge","index expressions","index in array","index substring","index table",
"index table entry","index to sdf-file path","indices of labeled table rows","indices of selected table rows",
"infinity","info","info molcart","inner join","insert rows","integer","integer","integer array",
"integer array","integer shell variables","interaction cutoff","interaction lists",
"interactive docking","interface comparison","interface residues","interface residues",
"interface torsions","interface torsions","interface view","intermolecular bond",
"internal coordinate file","internal coordinates","interpolate","interpolation","interruptAction",
"interruptAction","inverting array order","inverting array order","italic","iterative overlay",
"iterative superposition","iterative superposition","join","join tables","keep","keep",
"kernel models quality","key mapping","kmz","l_antiAlias","l_antiAlias","l_autoLink",
"l_autoLink","l_bpmc","l_bpmc","l_breakRibbon","l_breakRibbon","l_bufferedOutput",
"l_bufferedOutput","l_bug","l_bug","l_caseSensitivity","l_caseSensitivity","l_commands",
"l_commands","l_confirm","l_confirm","l_easyRotate","l_easyRotate","l_info","l_info",
"l_minRedraw","l_minRedraw","l_neutralAcids","l_neutralAcids","l_out","l_out","l_print",
"l_print","l_racemicMC","l_racemicMC","l_readMolArom","l_readMolArom","l_showAccessibility",
"l_showAccessibility","l_showMC","l_showMC","l_showMinSteps","l_showMinSteps","l_showResCodeInSelection",
"l_showResCodeInSelection","l_showSites","l_showSites","l_showSpecialChar","l_showSpecialChar",
"l_showSstructure","l_showSstructure","l_showTerms","l_showTerms","l_showWater","l_showWater",
"l_updateLists","l_warn","l_warn","l_wrapLine","l_wrapLine","l_writeStartObjMC","l_writeStartObjMC",
"l_xrUseHydrogen","l_xrUseHydrogen","label","label","label","label fonts","learn",
"learn","left join","left triangle of a matrix","library to replacement groups","library to replacement groups",
"ligand binding","ligand dock faq","ligand docking","ligand docking","ligand docking",
"ligand docking intro","ligand docking intro","ligand editing","ligand editor","ligand fit",
"ligand setting","ligand view","light","limits","line thickness in 2D chemicals",
"lineWidth","lineWidth","linear chemical notation","linear regression","link alignment to 3D",
"link group","link internal variables of molecular object","link sequences to 3D objects",
"link to alignment","link variable","link variables","linked alignment","linked sequence",
"linux shell","linux shell","list","list","list binary","list binary","list database",
"list database","list font","list html documents","list molcart","list molcart database",
"list of files","list updates","listUpdateThreshold","listUpdateThreshold","literature",
"load","load","load conf","load conf","load frame","load frame","load molcart","load object",
"load solution","load solution","load stack object","loadEDS","loadEDSweb","local",
"logarithm","logical","logical","logical operations","logical variables","logical_ops",
"logicals","long axes","loop database rebuilding","loop interrupt","loop modeling",
"loop modeling intro","loop search","low resolution shape","ma29","macro","macro",
"macro","macro_def","main ICM references","main concepts","main concepts","make",
"make 3d label","make angle","make background","make bond","make bond","make bond chain",
"make bond multi","make boundary","make boundary","make directory","make directory",
"make distance","make disulfide bond","make disulfide bond","make drestraint","make drestraint",
"make factor","make factor","make flat","make flat chem_array","make grob","make grob from image",
"make grob from matrix","make grob image","make grob map","make grob map","make grob matrix",
"make grob potential","make grob potential","make grob skin","make grob skin","make hbond",
"make image","make key","make key","make map","make map cell","make map factor","make map factor",
"make map potential","make map potential","make map xray","make molcart","make molsar",
"make pca","make peptide bond","make peptide bond","make plot","make reaction","make sequence",
"make sequence","make sequence alignment","make sequence from alignment","make torsion",
"make tree","make tree","make unique","make unique","makeAxisArrow","makeIndexChemDb",
"makeIndexChemDb","makeIndexSwiss","makeIndexSwiss","makePdbFromStereo","makePdbFromStereo",
"makePharma","makeSimpleDockObj","makeSimpleDockObj","makeSimpleModel","makeSimpleModel",
"making predictive models","manual style","map","map","map","map aa property to sequence",
"map averaging","map calculation","map conversion","map file","map fitting","map format",
"map mean value","map min value","map name","map operations","map transformations",
"map trimming","map value sigma","map.contouring","mapAtomMargin","mapSigmaLevel",
"mapSigmaLevel","mapping properties to sequence","maps and factors","mass-spectrometry functions",
"mass-spectrometry functions","mass-spectrometry functions","matching chemicals",
"matching hydrogens","matrix","matrix","matrix new","max map value","maxColorPotential",
"maxColorPotential","maxMemory","maxMemory","mc movie","mcBell","mcBell","mcJump",
"mcJump","mcShake","mcShake","mcStep","mcStep","memorizing positions","menu","menu",
"menu script","menu script","merge PDB","merge arrays to table","merge continuation lines",
"merge objects","merge parts of molecule","merge pdb","merge sarray into string",
"merge stacks","merge tables","merge tables","merge2","mergePdb","mergePdb","merges several chemical",
"merging into one molecule","mesh","mf score","mfMethod","mfMethod","mfWeight","mfWeight",
"mimel","mimel","mimelDepth","mimelDepth","mimelMolDensity","mimelMolDensity","minNumGrad",
"minTetherWindow","minTetherWindow","minimization exit criteria","minimize","minimize",
"minimize","minimize cartesian","minimize cartesian","minimize loop","minimize loop",
"minimize stack","minimize stack","minimize tether","minimize tether","minimize.drop",
"minimizeMethod","minimizeMethod","missing bonds","missing loop","missing loop","missing residues",
"missing triangles","mkUniqPdbSequences","mkUniqPdbSequences","mm26","mmcif","mmff",
"mmff","mmff type","mmff.show atom types","mnSolutions","mnSolutions","mncalls","mncalls",
"mncallsMC","mncallsMC","mnconf","mnconf","mnhighEnergy","mnhighEnergy","mnreject",
"mnreject","mnvisits","mnvisits","model reliability","modify","modify","modify and reroot",
"modify chem","modify chem charge","modify chem delete salt","modify chem normalize",
"modify chemical find replace","modify molcart","modifyGroupSmiles","modules","mol",
"mol","mol","mol","mol","mol","mol file","mol to icm","mol translation","mol-file to chem-table element",
"mol2","mol2","molcart","molcart","molcart connection options","molecular","molecular",
"molecular arrays","molecular manipulations","molecular modifications","molecular modifications",
"molecular object","molecular objects","molecular surface","molecular surface","molecular views",
"molecular views","molecular volume","molecule","molecule create","molecule create",
"molecule properties","molecule rotation","molecule translation","molecule translation",
"molecule.create","molecules intro","molecules intro","molecules sort/reorder","molecules.selecting",
"montecarlo","montecarlo","montecarlo","montecarlo","montecarlo","montecarlo","montecarlo",
"montecarlo command","montecarlo local","montecarlo trajectory","moprphing","more",
"more","morph","morph to tether target","morph2tz","morphing","morphing","morphing",
"mouse controls","mov file","move","move","move alignment sequence","move atoms",
"move bonding","move column","move column","move element","move file","move file",
"move fragments together","move molecule","move ms_molecule","move multiple molecules",
"move object","move sequence","move sequence","move table column","movie","movie images by frame",
"movie molecular simulation","movie rotate view","movie zooming","moving selection to another object",
"mpeg","ms_","multi center drestraint","multi-part molecule","multiple NMR models",
"multiple alignment","multiple alignment to pairwise similarities","multiple conformation storage",
"multiple mol as text","multiple object file","multiple sequence alignment intro",
"multiple smiles file format","mutate residue","mutating residue","mute","mute","mysql",
"nLocalDeformVar","nLocalDeformVar","nProc","nProc","nSsearchStep","nSsearchStep",
"name","naming compounds","nearest sequence","nested script","nice","nice","nice image",
"non-redundant","normal distribution","normalize chemicals","not defined","nota",
"notational conventions","nucleotides","number of dots","number of elements","number of hydrogen bonds",
"number of molecules in objects","number of occurrences","number of residues in molecules",
"number of van der Waals contacts","nvis","object","object","object parray","object properties",
"object stack","object to chemarray","object user fields","object.assign comment",
"object.source file","object.translate","objects merge","objects merge","objects.selecting",
"obsolete","occlusion shading","octanol transfer","off","off format","oligonucleotide melting",
"on-line help","on-line help","only","only","openGL window","operating system","operating system",
"operating system","optimal chemical superposition","optimize Hbond","optimize hydrogen bond",
"optimizeHbonds","optimizeHbonds","or","os_","other variables","output","overlay by atom pairs",
"overlay by chemical substructure","overview","pK shift","pK shift","packing density",
"packing density","pair-distances","pairdistance parray","panel layout","paragraphs",
"parallelization","parallelization","parray","parray","parrayTo3D","parrayToMol",
"parse SOAP message","parsing","parsing web pages","partial least squares","partial slide display",
"partial sum","passing arguments","passing by reference","pattern","pattern search",
"pause","pause","pdb","pdb","pdb","pdb file creation time","pdb files","pdb format",
"pdb merge","pdb merge","pdb sequence generation","pdb sequence generation","pdbDirStyle",
"pdbDirStyle","peptide","peptide","peptide docking","peptide docking","peptide folding",
"peptide folding intro","personal gui controls","personal setup","ph30","ph4","ph4 object faq",
"pharmacophore","pharmacophore","pharmacophore","pharmacophore faq","pharmacophore grid type definitions",
"pharmacophore object","pharmacophore objects","pharmacophores","phi psi plot","pipe",
"planar angle","plot","plot","plot 3D 2Dfunction","plot 3D 2Dfunction","plot 3D shape",
"plot 3D shape","plot area","plot area","plot histogram","plot histogram","plot how to",
"plot simple","plot simple","plot2DSeq","plot2DSeq","plotBestEnergies","plotBestEnergies",
"plotCluster","plotCluster","plotFlexibility","plotFlexibility","plotMatrix","plotMatrix",
"plotRama","plotRose","plotRose","plotSeqDotMatrix","plotSeqDotMatrix","plotSeqDotMatrix2",
"plotSeqDotMatrix2","plotSeqProperty","plotSeqProperty","plots 3d","plotting van der Waals",
"plotting vw faq","pls","pls column contributions","pls model","pls weights","pmf",
"pmf residue profile","pmf-file","pmffile","png","png","png","pocket","pocket","pocket",
"point coordinates","pointer array","polar hydrogens","polar surface area","polarization charge",
"polarization charge","postscript","potential surface coloring","pov-ray","precision",
"predictSeq","predictSeq","prediction model","prediction quality","prediction score",
"preference","preference","preferences","prepSwiss","prepSwiss","previous atom","principal axes",
"principal component analysis","principal component analysis","principal inertia moments",
"print","print","print bar","print image","print image","print to string","printMatrix",
"printMatrix","printPostScript","printPostScript","printTorsions","printTorsions",
"printf","printf","profile","profile","program overview","progress bar","progression",
"project setup","projected alignment","projecting surface charge","property","property",
"property grids","property map","property superposition","prosite","prosite","prosite pattern",
"protein docking","protein docking intro","protein docking intro","protein grid docking",
"protein grid docking","protein health","psa","purple box","query","query molcart",
"question mark operator","quit","quit","r property transfer via alignment","r_2out",
"r_2out","r_out","r_out","radii.electrostatic","radii.van der Waals","rainbow","ramachandran faq",
"ramachandran how to","random array","random order","randomSeed","randomSeed","randomize",
"randomize","randomize","randomize angles","randomize coordinates","randomize torsions",
"rarray","rarray","rarray","rarray","rarray properties","rdBlastOutput","rdBlastOutput",
"rdSeqTab","rdSeqTab","reaction","reaction group file","read","read","read FILTER",
"read alignment","read alignment","read all","read all","read binary","read binary",
"read color","read color","read column","read column","read comp_matrix","read conf",
"read conf","read csd","read csd","read csv","read database","read database","read drestraint",
"read drestraint","read drestraint type","read drestraint type","read entries from database",
"read factor","read factor","read from file","read from string","read fromstring",
"read ftp http","read ftp http","read grob","read grob","read html","read html file",
"read iarray","read iarray","read index","read index","read index table","read library",
"read library","read library mmff","read librarymmff","read map","read map","read matrix",
"read matrix","read mol","read mol","read mol","read mol","read mol2","read mol2",
"read mol2","read object","read object","read object parray","read pdb","read pdb",
"read pdb","read pdb sequence","read pdb sequence","read profile","read profile",
"read prosite","read prosite","read rarray","read rarray","read sarray","read sarray",
"read sequence","read sequence","read sequence","read sequence database","read sequence database",
"read smiles","read stack","read stack","read string","read string","read table",
"read table csv","read table html","read table mmcif","read table mol","read table mol",
"read table mol2","read table mol2","read trajectory","read trajectory","read trajectory and save a fragment",
"read trajectory write","read unix","read unix","read unix cat","read unix cat","read variable",
"read variable","read view","read view","read vrestraint","read vrestraint type",
"read vrestraint type","read with filter","readMolNames","readMolNames","readcomp_matrix",
"reading external tool output","reading from standard input","reading pdb from ftp",
"reading pdb from web","readv restraint","real","real array","real shell variables",
"real space refinement","reals","rebel","rebel","rebel","rebuild molcart index","recalculate dependent values",
"recalculate values","receptor","receptor preparation","redefine hydrogen coordinates",
"references","references","refineModel","refineModel","reflections","refresh view",
"refs","regexp","regexp","regexp back references","regexp syntax","regression","regul",
"regul","regular expression","regular expression","regular expression","regular expression filter",
"regular.expression","regularization","regularization","regularization","regularization",
"regularization procedure","regularization procedure","rejectAction","rejectAction",
"relational database","relative accessible area of atoms","release notes","release notes",
"remarkObj","remarkObj","remove expression tags","remove file","remove trailing blanks",
"removing html tags","removing outliers","rename","rename","rename chemicals","rename file",
"rename molcart","rename molcart","rename object","rename system","rename.atom","rename.molecule",
"rename.residue","reorder alignment sequences","reorder array","reorder objects",
"replace matching array element","replace without interpretation","replacing scaffold in a library",
"reproducible randomness","reroot","res selections","resLabelShift","resLabelShift",
"resLabelStyle","resLabelStyle","reserved names","residue","residue","residue","residue alignment",
"residue conservation","residue contact area matrix","residue contact areas","residue field",
"residue gap","residue gap","residue library file","residue name","residue number",
"residue number table","residue property averaging","residue property calculation",
"residue proximity","residue ranges","residue renumbering","residue selection","residue selection as string",
"residue selection function","residue table","residue tethering","residue user field",
"residue_selections","residues.selecting","resizing","restraints","restraints","restraints.torsion",
"return","return","reverse complement","reverse complement","reverse lighting","reverse normals",
"reversing order","rgb","rgb matrix","ribbon","ribbon","ribbon bullets","ribbonColorStyle",
"ribbonColorStyle","ribbonStyle","ribbonStyle","right join","rigid chemical superposition",
"ring","ring sampling","ring templates","rocking","root mean square deviation","rotate",
"rotate","rotate grob","rotate grob","rotate object","rotate object","rotate view",
"rotate view","rotation","rotation angle","rounding a real","row output","rsWeight",
"rsWeight","rs_","run script","running a docking job","running dock job","running dock script",
"running script from html","s-s bond","s_alignment_rainbow","s_blastdbDir","s_blastdbDir",
"s_editor","s_editor","s_entryDelimiter","s_entryDelimiter","s_errorFormat","s_errorFormat",
"s_fieldDelimiter","s_fieldDelimiter","s_helpEngine","s_helpEngine","s_icmPrompt",
"s_icmPrompt","s_icmhome","s_icmhome","s_icmhome","s_imageViewer","s_imageViewer",
"s_inxDir","s_inxDir","s_javaCodeBase","s_javaCodeBase","s_labelHeader","s_labelHeader",
"s_lib","s_lib","s_logDir","s_logDir","s_out","s_out","s_pdbDir","s_pdbDir","s_pdbDirFtp",
"s_pdbDirWeb","s_printCommand","s_printCommand","s_projectDir","s_projectDir","s_prositeDat",
"s_prositeDat","s_psViewer","s_reslib","s_skipMessages","s_skipMessages","s_sysCp",
"s_sysLs","s_sysMv","s_sysRm","s_tempDir","s_tempDir","s_translateString","s_translateString",
"s_userDir","s_userDir","s_usrlib","s_usrlib","s_webEntrezLink","s_webEntrezLink",
"s_webViewer","s_webViewer","s_xpdbDir","s_xpdbDir","sa23","sampling grid","sarray",
"sarray","sarray transformation in place","save print","save sdf file","saving graphics to album",
"saving image","scaffolds","scoring","screen X","screen coordinates","script","script",
"script","script file name","script inside ICM","script name","script.image generation",
"scripting molecular movements","sdf","sdf file","sdf file","sdf file","sdf file",
"sdf file","sdf file","sdf to chem-table","search for chemical pattern","search pdb headers",
"search pdb headers","search prosite","search prosite","search.sequence pattern",
"searchObjSegment","searchObjSegment","searchPatternDb","searchPatternDb","searchPatternPdb",
"searchPatternPdb","searchSeqDb","searchSeqDb","searchSeqFullPdb","searchSeqFullPdb",
"searchSeqPdb","searchSeqPdb","searchSeqProsite","searchSeqProsite","searchSeqSwiss",
"searchSeqSwiss","searches and alignments","second moments","secondary structure derivation from 3D",
"segMinLength","segMinLength","segment","segment","select","select atoms by number of bonded atoms",
"select atoms of the fixed torsions","select by bfactor","select by center of mass",
"select by coordinates","select by iarray","select by occupancy","select by user field",
"select chemical","select lines","select tether partners","select vw partners","selectMinGrad",
"selectMinGrad","selectSphereRadius","selectSphereRadius","selected stack conformations",
"selecting by b-factor","selecting by x y z","selecting columns","selecting from clusters",
"selecting neighboring elements","selecting residues","selecting saving","selection",
"selection","selection","selection elements","selection examples","selection functions",
"selection gap patching","selection gap patching","selection level","selection level",
"selection levels","selection simplification","selection transfer","selection transfer",
"selection type","selection types","selection variable","selection variable","selection.atoms",
"selection.functions","selection.molecules","selection.objects","selection.output",
"selection.residues","selection.torsions","selection.variables","selections in molecular objects",
"seq_ali_project","sequence","sequence","sequence","sequence","sequence alignment",
"sequence alignment","sequence alignment intro","sequence analysis intro","sequence assembly",
"sequence belongs to alignment","sequence conservation","sequence distance matrix from alignment",
"sequence dotplot","sequence from pdb","sequence identity","sequence intro","sequence modification",
"sequence neighbor","sequence parray","sequence pattern","sequence position correspondence",
"sequence positional weights","sequence redundancy removal","sequence search","sequence selection",
"sequence structure alignment","sequence to alignment transfer","sequence type","sequence-alignment mapping",
"sequence-alignment mapping","sequence-structure alignment","sequence.output format",
"sequence.output format","sequenceBlock","sequenceBlock","sequenceColorScheme","sequenceColorScheme",
"sequenceLine","sequenceLine","sequences","sequences not in alignments","set","set",
"set alternative atom","set area","set area","set atom","set atom","set background image",
"set bfactor","set bfactor","set biological symmetry","set bond topology","set bond type",
"set bond type","set bonds and formal charges","set cartesian","set chain","set chain",
"set charge","set charge","set charge formal","set charge formal","set charge mmff",
"set chargemmff","set chiral","set chiral","set color","set comment","set comment",
"set comment","set comment sequence","set comment sequence","set comp_matrix","set current map",
"set current object","set directory","set directory","set drestraint","set drestraint",
"set drestraint type","set drestraint type","set electrostatic radii","set error",
"set field","set field","set font","set font","set font grob","set font grob","set foreground",
"set format","set grob","set grob coordinates","set grob label","set group","set group column",
"set hydrogen","set key","set key","set label","set label","set label 3d label","set label chemical",
"set label chemical","set label distance","set label distance","set label table",
"set map","set molcart","set molecular variables","set name","set name sequence",
"set object","set occupancy","set occupancy","set plane","set plane","set property",
"set property","set property","set property chemical view","set radii graphical",
"set randomSeed","set randomize","set randomize","set resolution","set resolution",
"set site","set site residue","set site residue","set slide","set sstructure backbone",
"set sstructure backbone","set sstructure sequence","set sstructure to sequence",
"set stack","set stack energy","set stack energy","set stereo","set stereo","set swiss",
"set swiss name","set symmetry","set symmetry bio","set symmetry crystal","set symmetry group",
"set symmetry to a torsion","set table","set table","set terms","set terms","set tether",
"set tether append","set tether append","set texture","set type","set type","set type mmff",
"set type mmff","set type molecule","set type object","set type object","set type property",
"set type sequence","set type sequence","set variable grid","set variablegrid","set view",
"set view","set vrestraint","set vrestraint","set vrestraintvs_var","set vw radii",
"set vwelradii","set vwradii","set window","set window","set xstick","set xstick radii",
"setResLabel","setResLabel","setcomp_matrix","setting conf properties","setvs_var",
"sfWeight","sfWeight","sh24","shadows","shell","shell","shell intro","shell progression",
"shell warning message","shineStyle","shineStyle","shininess","shininess","show",
"show","show","show alias","show aliases","show alignment","show alignment","show area",
"show atom","show atom type","show atom type","show atoms","show clash","show clash",
"show color","show color","show column","show column","show comp_matrix","show database",
"show drestraint","show drestraint","show drestraint type","show drestraint type",
"show energy","show energy","show gradient","show gradient","show hbond","show hbond",
"show hbond exact","show hbondexact","show html","show html","show iarray","show iarray",
"show integer","show integer","show key","show key","show label","show label","show library",
"show library","show link","show link","show logical","show logical","show map","show map",
"show mol","show mol","show mol2","show mol2","show molecule","show molecule","show molecules",
"show molecules","show object","show object","show pdb","show pdb","show pharmacophore type",
"show pharmacophore type","show preferences","show preferences","show profile","show residue",
"show residue","show residue type","show residuetype","show segment","show segment",
"show sequence","show sequence","show shell variable","show site","show site","show stack",
"show stack","show svariable","show table","show table","show table as database",
"show term","show term","show tethers","show tethers","show version","show version",
"show volume","show volume","show volume map","show volumemap","show vrestraint",
"show vrestraint type","show vrestraint type","show vrestraints","showcomp_matrix",
"showing weak hydrogen bonds","side chain","side chain flexibility","sigma level",
"signal recognition measure","similarity","similarity","simple expressions","simple string substitution",
"simplify mesh structure","simulation duration","simulation temperature","simulations intro",
"site","site","site","site arrows","site table","sites by residue selection","sites sequences",
"sixthe power","skin","skin","skin intro","skin intro","slide","slide","slide","slide transition time",
"slides","slideshow","slideshow","slideshow","sln","sln","smallest set of smallest rings",
"smarts","smiles","smiles","smiles to chem-table element","smooth alignment","smooth interpolation",
"smooth map","smooth rarray","smooth surface","soap","soft trim","solubility","solvation",
"solvation energy","solvation energy","solvent accessible area","solvent accessible surface",
"solvent accessible surface","solvent accessible surface","sort","sort","sort","sort array",
"sort arrays","sort molecules","sort molecules","sort object","sort stack","sort stack",
"sort table","sort table","sortSeqByLength","sortSeqByLength","space transformations",
"spawn background job","special values","specificity","split","split","split column values",
"split grob","split grob","split group","split object","split object to molecules",
"split table","split table cell","split table to columns","split tree","split tree",
"splitting selection","sprintf","sprintf","sql","sql","sql","sql","sql","sql","sqlite",
"square matrix to element pairs","ssThreshold","ssThreshold","ssWeight","ssWeight",
"ssbond","ssearch","ssearch","ssearch","ssearchStep","ssearchStep","ssign sstructure segment",
"stack","stack","stack","stack","stack","stack","stack","stack","stack","stack","stack",
"stack","stack bin size","stack cleaning","stack extension","stack multiplication",
"stacks merge","stacks merge","standard chemical form","standard deviation","standardize chemical",
"startup","static RMSD","static and dynamic hbonds","stereo","stereo","stereo","stereo reconstruction",
"stereo reconstruction","stereoisomer","stereoisomers","stick","stick","store","store conf",
"store conf","store conf","store frame","store image","store stack object","store torsion type",
"strength of hydrogen bond","string","string","string array","string array","string filtering",
"string inversion","string label","string matching","string matching","string variables",
"strings","strip","strip","struct","structural alignment","structural alignment",
"structural alignment","structural alignment optimization","structural superposition",
"structure analysis","structure comparison","structure factors","structure structure",
"sub-alignment to selection","sub-matrix","subalignment","submap","subroutine","subset",
"substring","substring","substring","substructure","substructure","substructure search",
"superimpose","superimpose","superimpose","superimpose faq","superimpose how to",
"superimpose minimize","support","suppressing view changes","surface","surface accessibility",
"surface area","surface area","surface area","surface charge","surface color","surface dot density",
"surface energy","surface mesh","surface point selection","surface term","surfaceAccuracy",
"surfaceAccuracy","surfaceMethod","surfaceMethod","surfaceTension","surfaceTension",
"svariable","svariable","swapping protein fragments","swiss","swissFields","swissFields",
"swissprot","symmetrization of a matrix","symmetry","symmetry faq","symmetry group",
"sys","system","system command","system copy","system file move","system list file",
"system remove","table","table","table","table","table","table actions","table column",
"table column format","table column plot","table column transformations","table creation",
"table display style","table expression","table expression","table from matrix","table grid view",
"table of atoms and distances","table operations","table plot","table plot","table principal component analysis",
"table print","table row","table row label mark","table row mark","table selected row numbers",
"table subset","table subset","table.show html","targa","tautomer","tempCycle","tempLocal",
"tempLocal","temperature","temperature","temperature variations in optimizer","template docking",
"tensor product of two vectors","terminal font","terminal window","terms","terms",
"terms.hydrogen bonding","test","test binary","testing if argument exists","tether",
"tether","tether","text","text search in tables","text to script","texture","tga",
"then","then","thread to template","threading","three letter code","three letter code",
"thumbnails","tif","tif","time","timeLimit","timeLimit","tolFunc","tolFunc","tolGrad",
"tolGrad","topological psa","torsion rmsd comparison","torsions","tpsa","trajectory",
"trajectory","trajectory","trajectory","trajectory","trajectory file","trajectory frame writing",
"trajectory smoothing","transform","transform","transform general","transform grob coordinates",
"transform molecules","transform sarray","transformation","transformation vector",
"transformations and symmetry","transforming points","translate","translate","transparency",
"transparency","transparent background","transparent grob","transparent grobs","tree",
"tree","tree cluster","tree delete","tree label format","tree representatives","trim string array",
"trimming grid map values","true positives","truncate alignment","truncate values",
"tsv table format","two alignments","txdoc browser","type","tzMethod","tzMethod",
"tzWeight","tzWeight","uncharge functional groups","unclip","underline","undisplay",
"undisplay","undisplay graphics","undisplay window","unfix","unfix","unique","unique",
"unique","unique atomic order","unique column values","unique names","unique new object name",
"unique smiles","unix","unix","unix grep","unlink alignments","unlink sequences",
"unlink variables","update database","updates","updating atom pairs","url string parsing",
"user atom display","user environment","user menu","user-defined properties","user-defined solvation parameters",
"user_startup","user_startup.icm","users guide","users guide","v_","van der Waals surface",
"varLabelStyle","varLabelStyle","variable restraint","variable selection","vector length",
"vector product","vector transformation","vertex","vertex connectivity","vertexes",
"vertical alignment block","vertical workspace","vertices","vicinity","vicinity",
"video","view point","view restoration","view transition","views","virtual","virtual",
"virtual chemistry","virtual chemistry","virtual field","virtual ligand screening",
"virtual ligand screening","virtual ligand screening","virtual ligand screening",
"virtual ligand screening intro","visitsAction","visitsAction","vls","vls","vls",
"vls","vls cluster","vls faq","vls intro","vls job queueing","vls overview","vls parallelization",
"vls results","vls scores storage","vls threshold","vls_intro","volume","volume",
"vrestraint","vrestraint","vrestraint file","vrestraint type","vrestraint type","vrestraint type file",
"vs_","vs_out","vs_out","vwCutoff","vwCutoff","vwExpand","vwExpand","vwExpandDisplay",
"vwMethod","vwMethod","vwSoftMaxEnergy","vwSoftMaxEnergy","wait","wait","warning message",
"warning suppression","water.dielectric constant","waterRadius","waterRadius","wavefront format",
"web","web","web table","web table","webEntrezOption","webEntrezOption","weighted rmsd",
"while","while","whole string","window averaging","window layout","window width and height",
"windowSize","windowSize","windows movie","wire","wire","wireBondSeparation","wireBondSeparation",
"wireStyle","wireStyle","workspace","write","write","write album","write alignment",
"write alignment","write array","write as table","write binary","write binary","write blast",
"write column","write column","write database","write database","write drestraint",
"write drestraint","write drestraint type","write drestraint type","write factor",
"write factor","write grob","write grob","write html","write html","write iarray",
"write iarray","write image","write image","write image chemical","write image parray",
"write index","write index","write index blast","write index blast","write library",
"write library","write map","write map","write matrix","write matrix","write model",
"write model","write mol","write mol","write mol2","write mol2","write molcart","write movie",
"write object","write object","write object parray","write object simple","write pdb",
"write pdb","write png","write postscript","write postscript","write pov","write pov",
"write povray","write project","write rarray","write rarray","write sarray","write sarray",
"write sequence","write sequence","write session","write session","write several array",
"write simple object","write stack","write stack","write table","write table","write table mol",
"write table mol","write table with links","write tether","write tethers","write trajectory",
"write vs_var","writevs_var","xml","xplor format","xrMethod","xrMethod","xrWeight",
"xrWeight","xray density to rectangular energy map","xstick","xstick","xyz morphing",
"zega","zega","zega intro","|");

var titles=new Array("Logical operations","list graphic font : listing existing fonts for 2D and 3D graphics labels",
"Conformational Generator","interactive docking and focused library design","set font of a 3D label",
"set font of a 3D label","set font of a 3D label","list graphic font : listing existing fonts for 2D and 3D graphics labels",
"convert3Dto3D macro: converting a 3D chemical from a chemical spreadsheet or 3D mol/sdf file without changing coordinates",
"3D plots of functions","Smooth: three-dimensional averaging of residue properties",
"chemSuper3D","transform molecular objects or grobs","grob","Assignment","A","Abs",
"Abs","Acc","Acc","Acos","Acos","Acosh","Acosh","s_psViewer","Align","Align","Pairwise sequence alignment or sequence-structure alignment",
"Angle","Angle","Area","Area","Area contact matrix","Asin","Asin","Asinh","Asinh",
"Ask","Ask","Askg","Atan","Atan","Atan2","Atan2","Atanh","Atanh","Atom","Atom","Augment",
"Augment","Axis","Axis","B","BPMC","BPMC","Bfactor","Bfactor","Boltzmann","Boltzmann",
"Box","Box","Bracket","Bracket","C","map","CONSENSUS","CONSENSUSCOLOR","CONSENSUS_strength",
"CONSENSUS_strength","Cad","Cad","Comparing two conformations of the same molecule via residue-residue contact conservation.",
"Comparing two different, but structurally homologs proteins, via residue-residue contact conservation.",
"Comparing two conformations of the same molecule via residue-residue contact conservation.",
"Comparing two different, but structurally homologs proteins, via residue-residue contact conservation.",
"Ceil","Ceil","Cell","Cell","Charge","Charge","Chemical function. Converting and Generating library compounds.",
"Cluster","Cluster","grob","Color","Interpolating colors by gradient","Image color functions",
"skin","Consensus","Consensus","Corr","Corr","Cos","Cos","Cosh","Cosh","Count","Count",
"D","grob","find database: sequence and pattern searches","Schematic representations of DNA and RNA",
"EST,DNA alignment and assembly","Temperature","Schematic representations of DNA and RNA",
"Date","Date","Deletion","Deletion","Disgeo","Disgeo","Distance","Distance","Distance between two alignments",
"Distance matrix between two sets of coordinates","Distance Dayhoff","Tanimoto distance between two arrays of bit-strings",
"Distance between sequences or alignment sequences","Distance as_","Distance as_ rarray",
"Distance as_","Tanimoto distance between two arrays of bit-strings","Chemical similarity distance",
"Chemical similarity distance","Distance Dayhoff","Distance between iarrays","Distance between iarrays",
"Distance between sequences or alignment sequences","Distance matrix","Distance matrix",
"Distance matrix between two sets of coordinates","Distance as_ rarray","Distance between vectors",
"Distance between vectors","Distance tether","Distance tether","The distance of the cluster splitting level",
"The distance of the cluster splitting level","E-H","loadEDS","EST,DNA alignment and assembly",
"Eigen","Eigen","Energy","Energy","Error","Error","Error (for SOAP messages)","Exist",
"Exist","Database information","Existenv","Existenv","Exp","Exp","Extension","Extension",
"FILTER","FILTER","FILTER.Z","FILTER.Z","FILTER.gz","FILTER.gz","FILTER.uue","FILTER.uue",
"FTP","FTP","FTP.createFile","FTP.createFile","FTP.keepFile","FTP.keepFile","FTP.proxy",
"FTP.proxy","Field","Field","User field from a selection","User field from a selection",
"File","File","Find","Find","Find chemical substructures.","Find chemical substructures.",
"Find closest value in array","Find text in tables.","Find text in tables.","Version",
"Floor","Floor","Formula","GRAPHICS","GRAPHICS","GRAPHICS.atomLabelShift","GRAPHICS.atomLabelShift",
"GRAPHICS.atomValueCircles","GRAPHICS.ballRadius","GRAPHICS.ballRadius","GRAPHICS.hetatmZoom",
"GRAPHICS.ballStickRatio","GRAPHICS.ballStickRatio","GRAPHICS.chainBreakLabelDisplay",
"GRAPHICS.chainBreakStyle","GRAPHICS.clashWidth","GRAPHICS.clashWidth","GRAPHICS.displayLineLabels",
"GRAPHICS.displayLineLabels","GRAPHICS.displayMapBox","GRAPHICS.displayMapBox","GRAPHICS.dnaBallRadius",
"GRAPHICS.dnaBallRadius","GRAPHICS.dnaRibbonRatio","GRAPHICS.dnaRibbonRatio","GRAPHICS.dnaRibbonWidth",
"GRAPHICS.dnaRibbonWidth","GRAPHICS.dnaRibbonWorm","GRAPHICS.dnaRibbonWorm","GRAPHICS.dnaStickRadius",
"GRAPHICS.dnaStickRadius","GRAPHICS.formalChargeDislplay","GRAPHICS.grobLineWidth",
"GRAPHICS.grobLineWidth","GRAPHICS.hbondAngleSharpness","GRAPHICS.hbondBallPeriod",
"GRAPHICS.hbondBallStyle","GRAPHICS.hbondMinStrength","GRAPHICS.hbondRebuild","GRAPHICS.hbondStyle",
"GRAPHICS.hbondStyle","GRAPHICS.hbondWidth","GRAPHICS.hbondWidth","GRAPHICS.hetatmZoom",
"GRAPHICS.hydrogenDisplay","GRAPHICS.hydrogenDisplay","GRAPHICS.light","GRAPHICS.light",
"GRAPHICS.lightPosition","GRAPHICS.lightPosition","GRAPHICS.mapLineWidth","GRAPHICS.mapLineWidth",
"GRAPHICS.occupancyDisplay","GRAPHICS.occupancyRadiusRatio","GRAPHICS.quality","GRAPHICS.quality",
"Recommended setting for GRAPHICS.quality in images","GRAPHICS.rainbowBarStyle","GRAPHICS.rainbowBarStyle",
"GRAPHICS.resLabelDrag","GRAPHICS.resLabelDrag","GRAPHICS.resLabelShift","GRAPHICS.resLabelShift",
"GRAPHICS.ribbonRatio","GRAPHICS.ribbonRatio","GRAPHICS.ribbonWidth","GRAPHICS.ribbonWidth",
"GRAPHICS.ribbonWorm","GRAPHICS.ribbonWorm","GRAPHICS.rocking","GRAPHICS.rocking",
"GRAPHICS.rockingRange","GRAPHICS.rockingRange","GRAPHICS.rockingSpeed","GRAPHICS.rockingSpeed",
"GRAPHICS.selectionLevel","GRAPHICS.selectionLevel","GRAPHICS.selectionStyle","GRAPHICS.selectionStyle",
"GRAPHICS.sketchAccents","GRAPHICS.stereoMode","GRAPHICS.stereoMode","GRAPHICS.hetatmZoom",
"GRAPHICS.stickRadius","GRAPHICS.stickRadius","GRAPHICS.surfaceDotDensity","GRAPHICS.surfaceDotSize",
"GRAPHICS.surfaceDotSize","GRAPHICS.surfaceProbeRadius","GRAPHICS.transparency","GRAPHICS.wormRadius",
"GRAPHICS.wormRadius","GRID","GRID","GRID.gcghExteriorPenalty","GRID.gcghExteriorPenalty",
"GRID.gpGaussianRadius","GRID.gpGaussianRadius","GRID.margin","GRID.margin","GRID.maxEl",
"GRID.maxEl","GRID.maxVw","GRID.maxVw","GRID.minEl","GRID.minEl","GROB","GROB","GROB.arrowRadius",
"GROB.arrowRadius","GROB.atomSphereRadius","GROB.atomSphereRadius","GROB.contourSigmaIncrement",
"GROB.relArrowHead","GROB.relArrowHead","GROB.relArrowSize","GROB.relArrowSize","GUI",
"Creating your own GUI elements: Programming GUI.","make plot: Adding a scatter plot or a histogram to a table",
"GUI.tableRowMarkColors","GUI.tableRowMarkColors","GUI.windowLayout","GUI.workspaceFolderStyle",
"GUI.workspaceFolderStyle","GUI.workspaceStyle","GUI.workspaceStyle","GUI.workspaceTabStyle",
"GUI.workspaceTabStyle","Getarg","Getenv","Getenv","Gradient","Gradient","Graphics",
"Grob","Grob","Group","Group","HTTP.proxy","HTTP.proxy","Header","Histogram","Histogram",
"I-N","GUI.windowLayout","read html file","Modules of ICM","convertObject : creating a full atom model with types and charges from the source PDB file",
"s_reslib","ICM-shell","(ICM)-shell","ICM-shell","call","ICMHOME","ICMHOME","IMAGE",
"IMAGE.bondLength2D","IMAGE.color","IMAGE.color","IMAGE.compress","IMAGE.compress",
"IMAGE.gammaCorrection","IMAGE.gammaCorrection","IMAGE.generateAlpha","IMAGE.generateAlpha",
"IMAGE.lineWidth","IMAGE.lineWidth","IMAGE.lineWidth2D","IMAGE.orientation","IMAGE.orientation",
"IMAGE.paperSize","IMAGE.paperSize","IMAGE.previewResolution","IMAGE.previewResolution",
"IMAGE.previewer","IMAGE.previewer","IMAGE.printerDPI","IMAGE.printerDPI","IMAGE.quality",
"IMAGE.rgb2bw","IMAGE.rgb2bw","IMAGE.scale","IMAGE.scale","IMAGE.stereoAngle","IMAGE.stereoAngle",
"IMAGE.stereoBase","IMAGE.stereoBase","IMAGE.stereoText","IMAGE.stereoText","IMAGE.writeScale",
"I_out","I_out","Iarray","Iarray( as_ ): relative atom numbers of a selection","Iarray( [as_|rs_] number ): residue numbers of a selection",
"Iarray( as_ ): relative atom numbers of a selection","Generating a compressed integer bit vector for Tanimoto calculations.",
"Reversing the order of elements in an integer array.","Iarray( [as_|rs_] number ): residue numbers of a selection",
"Reversing the order of elements in an integer array.","Iarray( stack ): numbers of visits for all stack conformations",
"ICM command line options","IcmSequence","IcmSequence","Image","Image collection (type I)",
"Image collection (type II)","Index","Index","Index of compounds in chemarray with matching chemical patterns.",
"Index numbers of selected table rows","Index of an expression or an array of expressions",
"Index of a substring.","Index numbers of labeled table rows","Index numbers of selected table rows",
"Cluster selection and centers","Indexes of unique elements in an array","Indexx",
"Indexx","Info","Info","Image details","Insertion","Insertion","Integer","Integer",
"Integral","Integral","Interrupt","Interrupt","Introduction","LIBRARY","LIBRARY.men",
"LIBRARY.res","Label","Label","Length","Length","LinearFit","LinearFit","LinearModel",
"Log","Log","Predict","Predict","M_out","M_out","Map","Map","Link or assign reaction group arrays to a Rx positions on a chemical scaffold.",
"Mass","Mass","Match","Quality measures of a regression or classification model.",
"Matrix","Matrix","Matrix of inter-sequence distances","Matrix from the electrostatic boundary element calculation",
"Connectivity Matrix for Grob Vertices","Matrix containing a histogram","Matrix : create new matrix.",
"Matrix of residue-residue contacts","Matrix of residue substitution values.","Matrix of distances between the stack conformations",
"Matrix : extract a sub-matrix","Matrix symmetrization, extraction of left and right triangles.",
"Converting table columns into matrix","Matrix resulting from a tensor product fo two vectors.",
"Max","Max","Recommended setting for GRAPHICS.quality in images","MaxHKL","MaxHKL",
"Mean","Mean","gcMethod","Min","Min","Mod","Mod","Mol","Mol","Predicting Polar Surface Area",
"Moment","Moment","Money","Money","cnMethodAverage","Name","Name","Names of chemicals",
"Name( chemical property ) function","Find the name of the closest sequence in an alignment",
"Names of images","Information from databases","Names of objects in array","Names of sequences",
"List name of the fields in SOAP struct object","Name( string .. ) function","Name( tree .. ) function",
"Namex","Namex","Image comments","Sequence comments","Converting an alignment into text",
"Next","Covalent neighbors of an atom","Covalent neighbors of an atom","Nof","Nof",
"Counting various properties/patterns in chemical arrays.","Counting number of atom pairs, triples and quadruplets in distance objects",
"Counting chemical combinatorial library sizes.","Database information","Number of elements in the soap object",
"Counting clusters","Norm of a vector","Normalize","NotInList","O-R","OBJECT","OBJECT",
"Obj","Obj","Occupancy","Occupancy","Running VLS jobs in PBS UNIX cluster environment",
"PLOT","PLOT","PLOT.Yratio","PLOT.Yratio","PLOT.box","PLOT.box","PLOT.color","PLOT.color",
"PLOT.font","PLOT.font","PLOT.fontSize","PLOT.fontSize","PLOT.labelFont","PLOT.labelFont",
"PLOT.lineWidth","PLOT.lineWidth","PLOT.logo","PLOT.logo","PLOT.markSize","PLOT.markSize",
"PLOT.numberOffset","PLOT.numberOffset","PLOT.orientation","PLOT.orientation","PLOT.rainbowStyle",
"PLOT.rainbowStyle","PLOT.seriesLabels","PLOT.seriesLabels","Quality measures of a regression or classification model.",
"Quality measures of a regression or classification model.","Parray","Parray","Parray",
"Path","Path","Pattern","Pattern","Pi","Pi","Predicting Polar Surface Area","Potential",
"Potential","Power","Power","Predict","Probability","Probability","Profile","Profile",
"Property","Putarg","Putenv","Link or assign reaction group arrays to a Rx positions on a chemical scaffold.",
"How to calculate the electrostatic free energy by the REBEL-method","How to calculate the electrostatic free energy by the REBEL-method",
"Link or assign reaction group arrays to a Rx positions on a chemical scaffold.",
"R_2out","R_out","R_out","Radius","Radius","Random","Random","Random strings","Rarray",
"Reversing the order of elements in an array","rarray sequence projection","Transfer real sequence properties by alignment",
"Calculating array of alignment strength values for each column","Assign arbitrary amino-acid property to a sequence",
"Calculating array of alignment strength values for each column","Reversing the order of elements in an array",
"Real function","Rarray","Reference","Reference Guide","Remainder function.","Remainder function.",
"Replace","Replace","Chemical replace","Replace a matching element of an array with another string.",
"Replace using regular expressions","A straight forward substitution. Replace without any interpretation of the search string.",
"Res","Res","Res(ali ..): from sequence positions in sub-alignment to residue selection",
"Res(ali ..): from sequence positions in sub-alignment to residue selection","Resolution",
"Rfactor","Rfactor","Rfree","Rfree","Ring","Rmsd","Rmsd","TOOLS","Rot","Rot","S",
"SAR analysis","split group : derive replacement group arrays from a combinatorial library and a scaffold.",
"find database: sequence and pattern searches","SITE","SITE","SITE.defSelect","SITE.defSelect",
"SITE.labelOffset","SITE.labelOffset","SITE.labelStyle","SITE.labelStyle","SITE.labelWrap",
"SITE.labelWrap","SITE.showSeqSkip","SITE.showSeqSkip","SITE.wrapComment","SITE.wrapComment",
"Chemical formula","SMILES and SMARTS","clear","Counting various properties/patterns in chemical arrays.",
"List name of the fields in SOAP struct object","Number of elements in the soap object",
"Returns specific type of the SOAP object","SoapMessage","Ring","S_out","S_out","Sarray",
"Getting selected entries from index table","Score","Score","Scoring an existing alignment",
"Conservation score from an alignment projected to a structure","Quality measures of a regression or classification model.",
"A measure of overlap between two arrays","Scoring prediction quality from an array of errors and predicted scores",
"Aligning and scoring pairwise sequence alignment","Select","Select","Select atoms forming an abnormally long covalent bond",
"Select by coordinates, bfactor, occupancy or by user field","Select by number of sub-elements.",
"Select residues by a string array of selection expressions","Expand selection to the bonded terminal atoms: hydrogens, polar hydrogens or all.",
"Select atoms on rotatable (or non-rotatable) branches.","Select displayed or explicitly selected atoms",
"Select atoms with a certain number of covalently bonded neighbors.","Select residues by a string array of selection expressions",
"Select residues by a string array of selection expressions","Select atoms interacting with a given selection",
"Add small unselected residue ranges to a fragmented residue selection","Select an equivalent selection in a different object",
"Sequence","Sequence","create sequence array","reverse complement dna sequence function",
"Shuffle","Shuffle","Sign","Sign","Simulations","Sin","Sin","Sinh","Sinh","Site",
"Site","Slide","Smiles","windowSize","Smooth","Smooth","Smooth","Smooth: three-dimensional averaging of residue properties",
"Smooth: three-dimensional averaging of residue properties","SoapMessage","Sort",
"Sphere","Sphere","Split","Split","Split a chemical into individual molecules","Split by two separators",
"Split by a regular expression","Split tree cluster by threshold or number of clusters.",
"Sql","Sql","Sqrt","Sqrt","Srmsd","Sstructure","Sstructure","String","String","String( selection ): converting selections into the text form",
"Returning one of two alternatives depending on a condition","Export a chemical or chemical array as sdf text.",
"String( selection ): converting selections into the text form","Retrieve window layout string from a slide",
"Extracting a substring or reversing the order of characters in a string","Chemical formula",
"Sum","Sum","Sum ( chemical )","Blending images","write index","Symgroup","Symgroup",
"T","TOOLS","TOOLS.edsDir","TOOLS.pdbReadNmrModels","TOOLS.superimposeMaxDeviation",
"TOOLS.superimposeMaxIterations","TOOLS.superimposeMinAtomFraction","TOOLS.tsWeight",
"Table","Table","Outputting a table of residue numbers for corresponding positions",
"Exporting a table from an interatomic distance object of hydrogen bond parray.",
"Converting matrix into table columns","Column weights in PLS models and relative contributions of the descriptors.",
"Converting a square symmetrical matrix to a table with pairs of elements.","Extracting parameters of stack conformations",
"Table: decoding a URL string","Converting alignment into a table","Extracting parameters of stack conformations",
"Tan","Tan","Tanh","Tanh","Generating a compressed integer bit vector for Tanimoto calculations.",
"make tree","Tanimoto distance between two arrays of bit-strings","Temperature","Tensor",
"Tensor","Time","Time","Tointeger","Tolower","Tolower","Toreal","Torsion","Torsion",
"Tostring","Toupper","Toupper","Tr123","Tr321","Trace","Trace","Trans","Trans","Transform family of functions.",
"Transform family of functions.","Transpose","Transpose","Trim","Trim","Trim irrelevant expression tag sequences from the domain sequence.",
"Turn","Turn","Type","Type","Information from databases","Returns specific type of the SOAP object",
"U-Z","Unique","Unix","Unix","loadEDS","loadEDSweb","Selection Types","Value","Value",
"Value from SOAP message","Augment","Vector","Vector","Vector product","Vector symmetry transformation",
"Vector product","Vector symmetry transformation","Version","Version","View","View",
"Volume","Volume","WEBAUTOLINK","WEBAUTOLINK","WEBLINK","WEBLINK","Warning : the ICM warning message",
"Warning : the ICM warning message","read grob","Xyz : atom coordinates and surface points",
"Xyz : atom coordinates and surface points","Axis vectors of a crystallographic cell",
"Chemically matching a smiles string to a selection","Sparse surface mesh points",
"Sparse surface mesh points","Xyz : coordinates of atoms or vertexes","Applying crystallographic transformation",
"Converting 3*N vector to a Nx3 coordinate matrix","ZEGA","Sensitive Sequence Similarity Search, ZEGA",
"setting names to chemical compounds in an array or a table","The _chemBatch file",
"Conformational Generator","Running ICM batch docking script with _dockScan","_macro file. A collection of ICM macros.",
"_macro file. A collection of ICM macros.","The _startup file","_startup. ICM startup file",
"_startup. ICM startup file","Selection Types","Common abbreviations","Common abbreviations",
"Sparse surface mesh points","accFunction","accFunction","Pharmacophore object","read index",
"accessMethod","accessMethod","How to select accessible, buried, hydrophobic, residues.",
"make grob skin or surface","surface area","write index","Quality measures of a regression or classification model.",
"display volume","Make an alignment , an html document, or a table active.","Make an alignment , an html document, or a table active.",
"Make an alignment , an html document, or a table active.","add","add one or several columns or header elements to an existing table",
"Add dependent columns","Adding real arrays as matrix rows","add slide to a slideshow.",
"Add / insert table rows. Append tables.","Add / insert table rows. Append tables.",
"addBfactor","addBfactor","build one atom and rebuild hydrogens","add one or several columns or header elements to an existing table",
"convertObject : creating a full atom model with types and charges from the source PDB file",
"In place operations.","add slide to a slideshow.","Other selection criteria","Pharmacophores",
"Advanced operations and some comments","Advanced operations and some comments","Projecting properties from alignment to a member sequence.",
"alias","alias","align","align","align two molecules by their backbone topology",
"How to optimally superimpose without the residue alignment","align heavy command for multiple alternative structural alignments.",
"align heavy command for multiple alternative structural alignments.","How to optimally superimpose without the residue alignment",
"Align/color/select chemical by pattern or other properties","EST,DNA alignment and assembly",
"EST,DNA alignment and assembly","Pairwise sequence alignment and its significance",
"align number: renumber residues sequentially","align number: renumber residues sequentially",
"align: ICM multiple alignment algorithm","align: ICM multiple alignment algorithm",
"alignMethod","alignMethod","alignMinCoverage","alignMinCoverage","alignMinCoverage",
"alignOldStatWeight","alignOldStatWeight","alignSS  : sequence alignment guided by secondary structure and accessibility",
"alignTwoSequences  : interface macro to the `Align function","Res(ali ..): from sequence positions in sub-alignment to residue selection",
"alignment","alignment","Converting alignment into a table","sequenceLine","alignSS  : sequence alignment guided by secondary structure and accessibility",
"Smooth: expanding alignment gaps","set field","s_alignment_rainbow","Editing pairwise sequence-structure alignments",
"Editing pairwise sequence-structure alignments","Align","Displaying hidden alignment blocks in GUI.",
"Multiple sequence alignment","String","Projecting properties from alignment to a member sequence.",
"Projecting properties from member sequence to alignment","Conservation score from an alignment projected to a structure",
"Align","Calculating array of alignment strength values for each column","align two molecules by their backbone topology",
"Align","rarray sequence projection","Converting an alignment into text","Align",
"gapExtension","gapOpen","Converting an alignment into text","Charge or uncharge functional groups in compounds",
"all","all","How to print a table of the torsion angles","How to print a table of the torsion angles",
"GRAPHICS.transparency","set grob coordinates and string label","alpha helix","alpha helix",
"IMAGE.generateAlpha","set a flag of an alternative atom position","amber","amber",
"s_reslib","Tr123","Tr321","Logical operations","Counting number of atom pairs, triples and quadruplets in distance objects",
"GRAPHICS.hbondAngleSharpness","Slide","Setting rotation or rocking mode","display stack",
"Animation","set site","append","Add / insert table rows. Append tables.","append two tables via two columns with matching values",
"append (commands)","Appending sequences to a sequence group or an alignment","Appending sequences to a sequence group or an alignment",
"Appending a molecule or a ligand stack to an existing stack","Appending a molecule or a ligand stack to an existing stack",
"join tables","append two tables via two columns with matching values","add one or several columns or header elements to an existing table",
"In place operations.","LIBRARY.men","display slide","Adding real arrays as matrix rows",
"Calculate normalized 'area under curve' for the hit enrichment histogram vs rank or square root of hit rank",
"ICM-shell macros","Arithmetic operations","Arithmetic operations","Arithmetics",
"Arithmetics","move a table row or parray element","Molecular objects in arrays and tables",
"Assignment","Smooth","A measure of overlap between two arrays","delete parray elements",
"Nof","Subsets and Index Expressions","Determining selection axis and making an arrow.",
"set site","as2_out","as2_out","Atom selection","GRAPHICS.selectionLevel","GRAPHICS.selectionStyle",
"Select displayed or explicitly selected atoms","as_out","as_out","assign","assign",
"minimize tether: threading a model with idealized geometry through a pdb-structure",
"assign sstructure: derive secondary structure from a pattern of hydrogen bonds",
"segMinLength","assign sstructure segment","Assignment","Assignment","assign sstructure: derive secondary structure from a pattern of hydrogen bonds",
"Uniquely coloring by object, molecule, residue or atom","atom","atom","Atom codes (icm.cod)",
"Xyz : coordinates of atoms or vertexes","Colors ( icm.clr )","Label","set tether",
"Exporting a table from an interatomic distance object of hydrogen bond parray.",
"show area","Iarray( as_ ): relative atom numbers of a selection","Type","User field from a selection",
"atomLabelStyle","atomLabelStyle","atomSingleStyle","atomSingleStyle","set atom",
"Area","set a flag of an alternative atom position","Atom selection","set atom","make map potential: grid energies, converting crystallographic electron density maps",
"Calculate normalized 'area under curve' for the hit enrichment histogram vs rank or square root of hit rank",
"exitSessionStyle","autoSavePeriod","autoSavePeriod","write movie","axis","axis",
"axisLength","axisLength","Image color functions","ball","ball","base","base","The _chemBatch file",
"Running ICM batch docking script with _dockScan","beta","beta","GRAPHICS.atomValueCircles",
"read binary and read binary list","write binary","set key","How to evaluate the binding energy",
"How to evaluate the binding energy","How to identify binding pockets","split grob",
"How to identify binding pockets","set chain symbol","Generating a compressed integer bit vector for Tanimoto calculations.",
"Generating a compressed integer bit vector for Tanimoto calculations.","write index blast",
"find database fast : fast dictionary-based sequence search","write index blast",
"write movie","Blending images","specifying the font in ICM","Bond angle bending and improper torsion deformation parameters (icm.bbt)",
"Bond stretching parameters (icm.bst)","move several molecules into ane molecule, auto-bond several molecules",
"Covalent neighbors of an atom","show area","boundary element","boundary element",
"Matrix from the electrostatic boundary element calculation","Box","break","break",
"GRAPHICS.light","build","build","build one atom and rebuild hydrogens","Recalculating dependent columns",
"How to build new object from a sequence","Building object from string","How to build a helix from the two contacting monomers",
"How to build a helix from the two contacting monomers","How to build new object from a sequence",
"Building hydrogens according to topology and formal charges.","Building hydrogens according to topology and formal charges.",
"Building loop to a model by homology","Building loop to a model by homology","Building model by homology",
"writing tethers","Building molcart indices for substructure, similarity or exact search",
"Building object from sequence file","Building object from a chemical smiles string",
"Building object from a chemical smiles string","Building object from string","Building object from string",
"Built-in GUI functions for dynamic and user-defined dialogs in ICM.","compare: setting conformation comparison parameters for the montecarlo command",
"compare: setting conformation comparison parameters for the montecarlo command",
"Uniquely coloring by object, molecule, residue or atom","Select atoms with a certain number of covalently bonded neighbors.",
"compare: setting conformation comparison parameters for the montecarlo command",
"calcArea : calculating solvent accessible surface area","calcBindingEnergy: estimates electrostatic, hydrophobic and entropic binding terms",
"calcBindingEnergy: estimates electrostatic, hydrophobic and entropic binding terms",
"calcDihedralAngle: calculate an angle between two planes in a molecule","calcDihedralAngle: calculate an angle between two planes in a molecule",
"calcEnergyStrain: analyzing energy strain in proteins","calcEnergyStrain: analyzing energy strain in proteins",
"calcEnsembleAver: Boltzmann average the energies of the stack conformations","calcEnsembleAver: Boltzmann average the energies of the stack conformations",
"calcMaps:  calculate five energy maps and write them to files","calcMaps:  calculate five energy maps and write them to files",
"Calculating the matrix of pairwise percent identities between sequences of from a multiple sequence alignment.",
"calcPepHelicity: calculate average helicity of a peptide from trajectory frames",
"calcPepHelicity: calculate average helicity of a peptide from trajectory frames",
"calcProtUnfoldingEnergy: rough estimate of solvation energy change upon unfolding",
"calcProtUnfoldingEnergy: rough estimate of solvation energy change upon unfolding",
"calcRmsd: calculate three types of Rmsd between protein conformations","calcRmsd: calculate three types of Rmsd between protein conformations",
"calcSeqContent","calcSeqContent","Calculate normalized 'area under curve' for the hit enrichment histogram vs rank or square root of hit rank",
"How to calculate phases of reflections given a 3D model and a cell","How to calculate phases of reflections given a 3D model and a cell",
"call","Charge or uncharge functional groups in compounds","Xyz : atom coordinates and surface points",
"Molcart","split grob","cavity","cavity","How to display and characterize protein cavities",
"How to display and characterize protein cavities","read map","set directory","Axis vectors of a crystallographic cell",
"Selecting N representatives from clusters","center","center","GRAPHICS.chainBreakStyle",
"GRAPHICS.chainBreakLabelDisplay","Select atoms forming an abnormally long covalent bond",
"set chain symbol","set atom","set directory","set xstick radii","GRAPHICS.surfaceDotSize",
"charge","charge","Charge or uncharge functional groups in compounds","set charge",
"Chemical formula","chemSuper3D","Chemical arrays and tables. Operations, virtual chemistry.",
"Chemical arrays and tables. Operations, virtual chemistry.","find molcart : chemical search in Molcart database",
"make flat chem_array","find chemical: finds SMARTS pattern in 3D","Molcart","SAR analysis",
"split group : derive replacement group arrays from a combinatorial library and a scaffold.",
"Predicting Polar Surface Area","How to select a diverse subset from a chemical table?",
"IMAGE.lineWidth2D","IMAGE.bondLength2D","Chemical formula","Counting various properties/patterns in chemical arrays.",
"make key","Chemically matching a smiles string to a selection","find molecule: chemical substructure search",
"Reading an MOL2-file into an ICM table.","Reading an sdf-file into an ICM table.",
"Rmsd","Srmsd","Name( chemical property ) function","modify","Chemical modifications.",
"modifyGroupSmiles","Names of chemicals","Chemical modifications.","Standard representation of chemical groups",
"SMILES and SMARTS","Align/color/select chemical by pattern or other properties",
"Find chemical substructures.","make reaction : applying reaction to the products",
"find table : chemical search in ICM table","Align/color/select chemical by pattern or other properties",
"Counting various properties/patterns in chemical arrays.","Molcart","Coloring 2D molecules in a chemical table",
"Reading an mmcif-file into an ICM chemical table.","Reading an MOL2-file into an ICM table.",
"Reading an sdf-file into an ICM table.","setting names to chemical compounds in an array or a table",
"Writing/exporting an sdf/mol file","Transfer chemical structure, formal charges and bonds, from smiles or a chemical.",
"find molecule: chemical substructure search","make key","compareMethod","Rmsd","Chemical arrays and tables. Operations, virtual chemistry.",
"set chemical view options","Chemical arrays and tables. Operations, virtual chemistry.",
"Chemical function. Converting and Generating library compounds.","Enumeration of stereoisomers",
"l_racemicMC","Enumeration of stereoisomers","2. What to dock. Ligand, ligands, a database or a library.",
"Reading an mmcif-file into an ICM chemical table.","Trim","clashThreshold","clashThreshold",
"Tointeger","clear","clear","clear","clear","Table headers and actions","clipping plane",
"clipping plane","Find the name of the closest sequence in an alignment","Find closest value in array",
"Split tree cluster by threshold or number of clusters.","Cluster selection and centers",
"Selecting N representatives from clusters","Cluster selection and centers","Name( tree .. ) function",
"Counting clusters","Hierarchical cluster trees","make tree","Changing the position of tree cursor (separator) and calculating new cluster numbers",
"Hierarchical cluster trees","Selecting N representatives from clusters","cnMethodAverage",
"cnWeight","cnWeight","coil","coil","GRAPHICS.light","color","How to color grob surface by depth",
"color background","How to change the color of the graphics window background","How to change the color of the graphics window background",
"How to color residues according to their accessibilities","How to color residues according to their accessibilities",
"color by alignment","color by alignment","Coloring 2D molecules in a chemical table",
"How to color atoms according to their B-factors","How to color atoms according to their B-factors",
"How to color atoms according to their charges","How to color atoms according to their charges",
"maxColorPotential","How to color residues according to their hydrophobicities","How to color residues according to their hydrophobicities",
"Coloring 2D molecules in a chemical table","dsRebel: surface electrostatic potential",
"How to color grob surface by depth","Coloring 2D molecules in a chemical table",
"Align/color/select chemical by pattern or other properties","Colors ( icm.clr )",
"color grob","Coloring grob by proximity to atoms","GROB.atomSphereRadius","Coloring surfaces by 3D scalar field",
"Coloring grob by matrix of RGB values for each vertex.","Coloring grob by electrostatic potential",
"Automatic assignment of different colors to different grobs","color label","color label",
"color map","color map","display map","Uniquely coloring by object, molecule, residue or atom",
"Color","Coloring molecular objects","Specifying colors in ICM","color by alignment",
"color volume","color volume","column","column","Recalculating dependent columns",
"Name","Chemical function. Converting and Generating library compounds.","make reaction : applying reaction to the products",
"Counting chemical combinatorial library sizes.","mergePdb macro","How to combine several transformations",
"How to combine several transformations","make plot: Adding a scatter plot or a histogram to a table",
"Appending a molecule or a ligand stack to an existing stack","Name( string .. ) function",
"command","command","Command line editing","help","ICM command line options","How to get the list of the command words",
"How to get the list of the command words","exitSessionStyle","SOAP services and communications",
"NotInList","set comp_matrix: redefine residue comparison matrix.","show comp_matrix",
"comp_matrix","comp_matrix","mnconf","mnvisits","compare: setting conformation comparison parameters for the montecarlo command",
"Compare by deviations of internal coordinates/torsions.","Compare by deviations of cartesian coordinates with or without superposition",
"Compare by deviations of cartesian coordinates with or without superposition","find table : chemical search in ICM table",
"Compare by coordinate deviations of the surface patches only","Compare by deviations of cartesian coordinates with or without superposition",
"Compare by coordinate deviations of the surface patches only","Compare by deviations of internal coordinates/torsions.",
"compareMethod","NotInList","Comparison operators","Slide","How to create a table with the residue properties?",
"Chemical arrays and tables. Operations, virtual chemistry.","compress","compress files from ICM",
"compress stack of molecular conformations","compress graphical objects","compress graphical objects",
"compress files from ICM","compress","compress stack of molecular conformations",
"compress stack of molecular conformations","set group column","Built-in GUI functions for dynamic and user-defined dialogs in ICM.",
"Returning one of two alternatives depending on a condition","set stack properties",
"write stack","Extracting parameters of stack conformations","conf","conf","stack",
"Extracting parameters of stack conformations","Conformational Generator","Configuration file (icm.cfg)",
"maxMemory","compareMethod","minimize cartesian: full conformational optimization",
"Conformational Generator","display stack","write stack","conf","stack","compress stack of molecular conformations",
"Conformational stack ( *.cnf )","morph2tz : generating sterically plausible intermediate conformation for conformational morphing",
"load conformational stack from an object","store conformational stack inside an object",
"Conformational Generator","connect","connect","Connect to a Mysql database or database file",
"consensusStrength","CONSENSUS_strength","CONSENSUSCOLOR","CONSENSUS","consensusStrength",
"consensusStrength","Calculating array of alignment strength values for each column",
"Conservation score from an alignment projected to a structure","Constants","Constants",
"Matrix","continue","continue","GROB.contourSigmaIncrement","make grob skin or surface",
"GRAPHICS.light","Toreal","convert","convert","Creating a multi-part molecule in which parts are separately controlled.",
"How-to: Ligand docking simulations.","Chemical function. Converting and Generating library compounds.",
"make flat chem_array","strip","Converting a chemical compound and rerooting the tree at the same time",
"Converting a chemical compound and rerooting the tree at the same time","parrayToMol macro",
"parrayTo3D macro","Comparing convert, minimize tether and regularization.","Comparing convert, minimize tether and regularization.",
"Creating a multi-part molecule in which parts are separately controlled.","Converting a chemical compound from a mol/sdf or mol2 files.",
"convert2Dto3D macro: converting molecules from a 2D mol file or chemical spreadsheet to optimized 3D object(s)",
"convertObject : creating a full atom model with types and charges from the source PDB file",
"How to quickly convert a pdb file into an ICM-object","How to quickly convert a pdb file into an ICM-object",
"set cartesian : imposing ring templates","convert3Dto3D macro: converting a 3D chemical from a chemical spreadsheet or 3D mol/sdf file without changing coordinates",
"Tointeger","convert","Tointeger","convert2Dto3D macro: converting molecules from a 2D mol file or chemical spreadsheet to optimized 3D object(s)",
"convert3Dto3D macro: converting a 3D chemical from a chemical spreadsheet or 3D mol/sdf file without changing coordinates",
"convertObject : creating a full atom model with types and charges from the source PDB file",
"Converting a chemical compound from a mol/sdf or mol2 files.","How-to: Ligand docking simulations.",
"Converting alignment into a table","Converting a chemical from pdb.","Converting table columns into matrix",
"Real function","cool","cool","GRAPHICS.sketchAccents","temperature","axisLength",
"display origin","copy","IMAGE.bondLength2D","s_sysCp","copy site","copy site","Tensor",
"Select atoms with a certain number of covalently bonded neighbors.","Covalent neighbors of an atom",
"Covalent neighbors of an atom","cpk","cpk","make bond: forming a covalent bond",
"makePharma macro","Creating a multi-part molecule in which parts are separately controlled.",
"Credits","crypt","crypt","Augment","How to generate symmetry related molecules",
"How to generate symmetry related molecules","Transform family of functions.","Occupancy",
"Crystallographic symmetry","Resolution","read table in ICM or CSV/TSV format","Crystallographic symmetry",
"current table","current table","iProc","current map","current map","current object",
"current object","Path","Table headers and actions","Customization","Customization",
"IMAGE.lineWidth2D","IMAGE.bondLength2D","temperature","Credits","database","database",
"create database table view","Connect to a Mysql database or database file","Molsoft database files",
"make molcart","Date data-type","Date data-type","dcMethod","dcMethod","dcWeight",
"dcWeight","SAR analysis","split group : derive replacement group arrays from a combinatorial library and a scaffold.",
"defCell","defCell","defSymGroup","defSymGroup","set color directly and without graphics",
"script","How to find and display rotation/screw transformation axis","How to find and display rotation/screw transformation axis",
"Box","delete ICM shell objects","undisplay window","delete alias","delete alias",
"Delete array elements","Delete array elements","delete ICM-shell object","delete atom",
"delete atom","delete bond","delete bond","delete boundary","delete boundary","delete selected chemical fragments",
"delete selected chemical fragments","delete selected chemical fragments","delete selected chemical fragments",
"delete ICM shell objects","delete conf","delete conf","delete directory","delete directory",
"delete disulfide bond","delete disulfide bond","delete drestraint","delete parray elements",
"delete file","Delete array elements","delete hydrogen","delete hydrogen","delete label",
"delete label","delete labels from 2S chemical spreadsheets","delete labels from 2S chemical spreadsheets",
"delete link","delete link","delete map","delete map","Delete from database","delete molecule",
"delete molecule","delete object","delete object","delete a tree from a table header array",
"delete a tree from a table header array","delete peptide bond","delete peptide bond",
"Delete plots from the table","Chemical Find and Replace","delete selection variable",
"delete selection variable","delete sequence","delete sequence","delete history lines",
"delete history lines","delete ICM-shell object","delete ICM-shell object","delete site",
"delete sstructure","delete sstructure","delete stack","delete stack","delete conformational stack inside an object",
"delete file","delete table","delete table","delete table","delete term","delete term",
"delete tether","delete tether","delete a tree from a table header array","Delete array elements",
"delete ICM shell objects","Select atoms forming an abnormally long covalent bond",
"delete drestraint","delete site","dsRebel: surface electrostatic potential","dcWeight",
"How to automatically place a fragment into density","How to automatically place a fragment into density",
"dcMethod","make map cell","densityCutoff","densityCutoff","Add dependent columns",
"color volume","Depth-cueing, or fog","Depth-cueing, or fog","fogStart","surfaceMethod",
"Askg","GUI and Programming Dialogs in ICM","GUI and Programming Dialogs in ICM",
"Askg","dielConst","dielConst","dielConstExtern","dielConstExtern","dielConst","NotInList",
"make torsion","How to calculate a dihedral angle","How to calculate a dihedral angle",
"delete directory","make directory","Sarray","display","display","display GUI windows",
"display box","clashThreshold","display clash","display clash","display drestraint",
"display drestraint","GRAPHICS.atomValueCircles","display off-screen","display gradient",
"display gradient","display grob","display grob","set font of a 3D label","display GUI windows",
"display hbond","display hbond","display label","display label","GRAPHICS.displayMapBox",
"display map","display map","display model","display model","display new: refresh or unclip view",
"display new: refresh or unclip view","display off-screen","display off-screen","display origin",
"display origin","display ribbon","display ribbon","Setting rotation or rocking mode",
"display site","display site","display skin or dotted surface","display skin or dotted surface",
"display slide","display stack","display string","display string","display skin or dotted surface",
"GRAPHICS.atomValueCircles","display tethers","display tethers","display trajectory : simulation trajectory",
"display trajectory : simulation trajectory","display volume","Graphics controls",
"display window","display window","GRAPHICS.hbondRebuild","distance","distance","cnMethodAverage",
"Cad","Comparing two conformations of the same molecule via residue-residue contact conservation.",
"distance geometry","distance geometry","Converting a square symmetrical matrix to a table with pairs of elements.",
"Calculating the matrix of pairwise percent identities between sequences of from a multiple sequence alignment.",
"Matrix of distances between the stack conformations","drestraint","Distance restraints ( *.cn )",
"Distance restraint types ( icm.cnt or *.cnt )","set drestraint","Counting number of atom pairs, triples and quadruplets in distance objects",
"ICM distribution and support","Score","disulfide bond","How to select a diverse subset from a chemical table?",
"Split a chemical into individual molecules","Six frame DNA/RNA sequence translation",
"Six frame DNA/RNA sequence translation","Running ICM batch docking script with _dockScan",
"icmPocketFinder macro","Introduction and pre-requisites","dsPocket and dsPocketRec",
"How to perform an explicit flexible docking of two simplified protein molecules",
"How to perform an explicit flexible docking of two simplified protein molecules",
"Flexible docking considerations.","Template constrained docking","HTML documents in ICM",
"Image color functions","Pharmacophore object","Similarity dotplot: alternative alignments and repetitive subdomains",
"print bar : showing progress bar from ICM shell","GRAPHICS.surfaceProbeRadius","Table headers and actions",
"show drestraint","drestraint","drestraint","make drestraint: extract distances structure",
"cnWeight","set drestraint","drestraint type","drestraint type","drop","drop","ds3D",
"ds3D","dsCellBox: displays crystallographic unit cell","dsCellBox: displays crystallographic unit cell",
"dsChem : chemical style display","dsChem : chemical style display","dsCustom: extended display and property-coloring",
"dsCustom: extended display and property-coloring","dsPocket and dsPocketRec","dsPocket and dsPocketRec",
"dsPropertySkin: display molecular surfaces colored by properties essential for binding",
"dsPropertySkin: display molecular surfaces colored by properties essential for binding",
"dsPrositePdb","dsPrositePdb","maxColorPotential","dsRebel: surface electrostatic potential",
"dsRebel: surface electrostatic potential","dsSeqPdbOutput : visualize the sequence similarity search results",
"dsSeqPdbOutput : visualize the sequence similarity search results","dsSkinLabel",
"dsSkinLabel","dsStackConf","dsStackConf","dsVarLabels","dsVarLabels","dsXyz : display",
"dsXyz : display","write molcart","Built-in GUI functions for dynamic and user-defined dialogs in ICM.",
"ecepp","ecepp","edit","edit","TOOLS.edsDir","Calculating electrostatic potential",
"electroMethod","electroMethod","GROB.contourSigmaIncrement","loadEDS","loadEDSweb",
"mapAtomMargin","addBfactor","TOOLS.edsDir","Matrix from the electrostatic boundary element calculation",
"make grob potential","Coloring grob by electrostatic potential","How to calculate the electrostatic free energy by the REBEL-method",
"dsRebel: surface electrostatic potential","REBEL","Calculating electrostatic potential",
"Tensor","elseif","elseif","endfor","endfor","endif","endif","endmacro","endmacro",
"endwhile","endwhile","Energetics and electrostatics","Energy and Penalty Terms",
"How to calculate an ensemble average","How to calculate an ensemble average","Conservation score from an alignment projected to a structure",
"Converting a chemical compound and rerooting the tree at the same time","Enumeration of stereoisomers",
"Tautomer enumeration","Combinatorial library enumeration","Enumeration of stereoisomers",
"Combinatorial library enumeration","Tautomer enumeration","Chemical function. Converting and Generating library compounds.",
"s_psViewer","Error (for SOAP messages)","s_skipMessages : ignore specific error messages",
"clear","errorAction","errorAction","set vrestraint variable","evalSidechainFlex macro",
"evalSidechainFlex macro","Evolutionary trees, 2d and 3d sequence clustering","Evolutionary trees, 2d and 3d sequence clustering",
"find molcart : chemical search in Molcart database","find table : chemical search in ICM table",
"Replace a matching element of an array with another string.","Example scripts","Example scripts",
"exit","exit","exitSessionStyle","set tether append: Extending the identified substructure with neighboring atoms",
"write molcart","write movie","Writing/exporting an sdf/mol file","Shortcuts","Comparison operators",
"Arithmetic operations","Assignment","Comparison operators","Logical operations",
"Expand selection to the bonded terminal atoms: hydrogens, polar hydrogens or all.",
"Expand selection to the bonded terminal atoms: hydrogens, polar hydrogens or all.",
"make background : spawning background jobs and processing their output.","Link or assign reaction group arrays to a Rx positions on a chemical scaffold.",
"Getarg","load conformational stack from an object","Energetics and electrostatics",
"structure factor (factor)","structure factor (factor)","Quality measures of a regression or classification model.",
"specifying the font in ICM","ICM distribution and support","Frequently asked questions on cheminformatics and compound property prediction.",
"Ligand overlays","How to export/dump a molcart table to an sdf file?","How to read compounds one by one from a Molcart table?",
"How to superimpose multiple compounds with similar activity?","How to create a table with the residue properties?",
"make map factor : calculate electron density map from structure factors","find database fast : fast dictionary-based sequence search",
"fasta","fasta","Retrieving sequence site information","set site","ffMethod","List name of the fields in SOAP struct object",
"write index","Exist","Getarg","File","File","File","File","File","Files","Files",
"find table : chemical search in ICM table","create database table view","Built-in filter functions for arrays, chemicals and table rows",
"Built-in filter functions for arrays, chemicals and table rows","find","find alignment : automated structural alignment",
"find alignment : automated structural alignment","Chemcial Find and Replace","Chemical modifications.",
"find chemical: finds SMARTS pattern in 3D","Chemical modifications.","Index of compounds in chemarray with matching chemical patterns.",
"alignMinCoverage","find database: sequence and pattern searches","find database fast : fast dictionary-based sequence search",
"find","Index numbers of selected table rows","find molcart : chemical search in Molcart database",
"find molcart : chemical search in Molcart database","Molcart","find molecule: chemical substructure search",
"find molecule: chemical substructure search","find pattern","find pattern","find pdb: fragment search",
"find pdb: fragment search","find pharmacophore : pharmacophore search in ICM table",
"find pharmacophore : pharmacophore search in ICM table","find prosite  or profile",
"find prosite  or profile","find table : chemical search in ICM table","find table : chemical search in ICM table",
"find_related_sequences macro: identify similar and superposable chains in multiple objects",
"findFuncMin","findFuncMin","findFuncZero","findFuncZero","findSymNeighbors: cell and crystallographic neighbors",
"findSymNeighbors: cell and crystallographic neighbors","find_related_sequences macro: identify similar and superposable chains in multiple objects",
"Select atoms forming an abnormally long covalent bond","dcMethod","fix","fix","Select atoms on rotatable (or non-rotatable) branches.",
"dsChem : chemical style display","Flow control","fogStart","color volume","display volume",
"Depth-cueing, or fog","fogStart","fogStart","segment","foldbank.db","foldbank.db",
"How to predict 3D structure of a peptide from its sequence","How to predict 3D structure of a peptide from its sequence",
"list graphic font : listing existing fonts for 2D and 3D graphics labels","specifying the font in ICM",
"Configuration file (icm.cfg)","specifying the font in ICM","for","for","fork","fork",
"GRAPHICS.formalChargeDislplay","charge","write index blast","fprintf","fprintf",
"Sparse surface mesh points","Augment","Creating a multi-part molecule in which parts are separately controlled.",
"store","write movie","set size and position of ICM graphics window","ICM-shell macros",
"Functions returning selections","Smooth: expanding alignment gaps","gapExtension",
"gapExtension","gapFunction","gapFunction","gapOpen","gapOpen","gcMethod","morph2tz : generating sterically plausible intermediate conformation for conformational morphing",
"Image collection (type I)","Genomics","group sequence unique: clustering, redundancy removal and assembly",
"Genomics","minimize cartesian: full conformational optimization","Getting started",
"SOAP services and communications","Getting started","global command","global command",
"Glossary","Glossary","goto","goto","gpWeights","set type property : contributions of atoms types to the property grids.",
"gpWeights","Rmsd","display box","Index numbers of selected table rows","Select displayed or explicitly selected atoms",
"set background image in graphics","Version","ICM graphics","clipping plane","GRAPHICS.stereoMode",
"Graphics controls","Graphics controls","Colors ( icm.clr )","Depth-cueing, or fog",
"Exist","Graphics","Complex combined representations","Complex combined representations",
"How to learn the ICM molecular graphics commands in 30 seconds","How to learn the ICM molecular graphics commands in 30 seconds",
"axisLength","fogStart","set 3D view rotation, translation and size","A problem with the posix repetitions",
"make map potential: grid energies, converting crystallographic electron density maps",
"grob","grob","How to color grob surface by depth","Graphics  objects ( *.gro )",
"set grob coordinates and string label","set grob coordinates and string label","translate",
"group","group","group table by column with non-unique values","group table by column with non-unique values",
"modify","group sequence","group sequence","group sequence unique: clustering, redundancy removal and assembly",
"group sequence unique: clustering, redundancy removal and assembly","group table",
"group table","set group column","GUI and Programming Dialogs in ICM","GUI and Programming Dialogs in ICM",
"Table headers and actions","Exist","Built-in GUI functions for dynamic and user-defined dialogs in ICM.",
"undisplay window","Creating your own GUI elements: Programming GUI.","GUI and Programming Dialogs in ICM",
"set group column","compress files from ICM","fogStart","hbCutoff","hbCutoff","hbCutoff",
"GRAPHICS.hbondMinStrength","GRAPHICS.hbondAngleSharpness","Delete array elements",
"hbond- hydrogen bonds","hbond- hydrogen bonds","Strength and color of a hydrogen bond",
"GRAPHICS.hbondBallPeriod","GRAPHICS.hbondBallStyle","Strength and color of a hydrogen bond",
"Exporting a table from an interatomic distance object of hydrogen bond parray.",
"show hbond","GRAPHICS.hbondMinStrength","How to display hydrogen bonds","How to display hydrogen bonds",
"add one or several columns or header elements to an existing table","Determining selection axis and making an arrow.",
"How to evaluate helicity of a peptide from the BPMC simulation","How to evaluate helicity of a peptide from the BPMC simulation",
"help","help","Getting help in built-in ICM html browser.","help","Getting help in built-in ICM html browser.",
"help commands","help commands","help functions","help functions","How to get help",
"help","How to get help","Displaying hidden alignment blocks in GUI.","display off-screen",
"GRAPHICS.hydrogenDisplay","store conformational stack inside an object","Hierarchical cluster trees",
"highEnergyAction","highEnergyAction","Trim irrelevant expression tag sequences from the domain sequence.",
"make plot: Adding a scatter plot or a histogram to a table","Matrix","history","history",
"write session","delete history lines","Brief history of ICM","homodel","homodel",
"High quality models by homology","Building model by homology","set tether","alignSS  : sequence alignment guided by secondary structure and accessibility",
"How to build a model by homology","How to build a model by homology","High quality models by homology",
"The output","The algorithm performs the following steps:","How to export/dump a molcart table to an sdf file?",
"GUI and Programming Dialogs in ICM","Name( string .. ) function","HTML documents in ICM",
"Make an alignment , an html document, or a table active.","HTML documents in ICM",
"Area","Hydration parameters ( icm.hdt )","GRAPHICS.hbondMinStrength","GRAPHICS.hbondAngleSharpness",
"make hbond","hbond- hydrogen bonds","Hydrogen bonding types ( icm.hbt )","hbCutoff",
"Counting number of atom pairs, triples and quadruplets in distance objects","GRAPHICS.hydrogenDisplay",
"set hydrogen : re-calculating coordinates of hydrogens from the connected heavy atoms",
"How to build a hydrophobicity profile","How to build a hydrophobicity profile","iProc",
"iProc","Slide","i_out","i_out","Delete array elements","Find closest value in array",
"Reversing the order of elements in an integer array.","Index numbers of selected table rows",
"iarray","Creating or converting into an iarray","Slide","ICM algorithms","ICM applications",
"ICM algorithms","read binary and read binary list","Getarg","Path","Conditional branching",
"Conditional branching","Commands","Commands","Flow control","ICM command line options",
"Functions","Functions","ICM graphics","Brief history of ICM","Jumps","Jumps","How to boost learning process while reading the ICM manual",
"How to boost learning process while reading the ICM manual","Loops","Loops","Macros",
"Macros","The main description of the ICM method","LIBRARY.men","ICM applications",
"ICM molecular objects","ICM molecular objects","ICM-object ( *.ob )","exitSessionStyle",
"ICM-shell","ICM distribution and support","Tables and collections","Tables and collections",
"ICM-alignment file","ICM-alignment file","ICM all-file: a file with multiple icm objects.",
"ICM all-file: a file with multiple icm objects.","Bond angle bending and improper torsion deformation parameters (icm.bbt)",
"Bond angle bending and improper torsion deformation parameters (icm.bbt)","Bond stretching parameters (icm.bst)",
"Bond stretching parameters (icm.bst)","Configuration file (icm.cfg)","Configuration file (icm.cfg)",
"Colors ( icm.clr )","Colors ( icm.clr )","Residue comparison table ( icm.cmp or *.cmp )",
"Residue comparison table ( icm.cmp or *.cmp )","Distance restraints ( *.cn )","Distance restraints ( *.cn )",
"Conformational stack ( *.cnf )","Conformational stack ( *.cnf )","Distance restraint types ( icm.cnt or *.cnt )",
"Distance restraint types ( icm.cnt or *.cnt )","Atom codes (icm.cod)","Atom codes (icm.cod)",
"A sample *.col file","A sample *.col file","Graphics  objects ( *.gro )","Graphics  objects ( *.gro )",
"Hydrogen bonding types ( icm.hbt )","Hydrogen bonding types ( icm.hbt )","Hydration parameters ( icm.hdt )",
"Hydration parameters ( icm.hdt )","ICM HTML help file ( icm.htm )","ICM HTML help file ( icm.htm )",
"Integer array ( *.iar )","Integer array ( *.iar )","Electron density map ( *.map )",
"Electron density map ( *.map )","Matrix ( *.mat )","Matrix ( *.mat )","ICM-object ( *.ob )",
"ICM-object ( *.ob )","Protein databank file ( or *.ent )","Protein profiles ( *.prf )",
"Protein profiles ( *.prf )","Numerical data (real arrays) ( *.rar )","Numerical data (real arrays) ( *.rar )",
"Residue library ( icm.res or *.res )","Residue library ( icm.res or *.res )","Multidimensional variable restraints ( *.rs )",
"Multidimensional variable restraints ( *.rs )","Multidimensional variable restraint types ( icm.rst or *.rst )",
"Multidimensional variable restraint types ( icm.rst or *.rst )","String array ( *.sar )",
"String array ( *.sar )","ICM-sequence file ( *.se )","ICM-sequence file ( *.se )",
"Sequence ( *.seq *.pir *.gcg *.msf *.gb )","Sequence ( *.seq *.pir *.gcg *.msf *.gb )",
"A sample *.tab file","A sample *.tab file","Torsion parameters ( icm.tot )","Torsion parameters ( icm.tot )",
"MC simulation trajectory ( *.trj )","MC simulation trajectory ( *.trj )","Object Variables ( *.var )",
"Object Variables ( *.var )","Van der Waals parameters ( icm.vwt )","Van der Waals parameters ( icm.vwt )",
"icmCavityFinder: analyze and display cavities","icmCavityFinder: analyze and display cavities",
"icmMacroShape: generating a smooth low resolution surface of a macromolecule.","icmPmfProfile",
"icmPmfProfile","icmPocketFinder macro","icmPocketFinder macro","read html file",
"Getarg","if","if","swissFields","How to save and print the generated image","How to save and print the generated image",
"How to annotate a molecular image in the graphics window","How to annotate a molecular image in the graphics window",
"How to return a molecule to the center of the graphics window","How to return a molecule to the center of the graphics window",
"targa","How to make a nice high-resolution image","Array of images","How to make a nice high-resolution image",
"How to rotate one molecule around its own center of mass","set tether","In place operations.",
"In place operations.","Connectivity Matrix for Grob Vertices","Configuration file (icm.cfg)",
"set charge","Subsets and Index Expressions","Index of an expression or an array of expressions",
"Index of a substring.","write index","Getting selected entries from index table",
"Path","Index numbers of labeled table rows","Index numbers of selected table rows",
"Toreal","info","Database additional statistics","join tables","Add / insert table rows. Append tables.",
"integer","integer","Iarray","iarray","Integer shell parameters","l_updateLists",
"l_updateLists","interactive docking and focused library design","Compare by coordinate deviations of the surface patches only",
"How to identify atoms or residues at the molecular interface","How to identify atoms or residues at the molecular interface",
"How to identify torsions at the molecular interface","How to identify torsions at the molecular interface",
"dsPocket and dsPocketRec","move several molecules into ane molecule, auto-bond several molecules",
"Object Variables ( *.var )","Free and all variables (v_ and V_)","Interpolating colors by gradient",
"Interpolating colors by gradient","interruptAction","interruptAction","Reversing the order of elements in an integer array.",
"Reversing the order of elements in an array","specifying the font in ICM","superimpose",
"TOOLS","Iterative search of the best atom pair subset for superposition.","join tables",
"join tables","keep","keep","Quality measures of a regression or classification model.",
"Colors ( icm.clr )","grob","l_antiAlias","l_antiAlias","l_autoLink","l_autoLink",
"l_bpmc","l_bpmc","l_breakRibbon","l_breakRibbon","l_bufferedOutput","l_bufferedOutput",
"l_bug","l_bug","l_caseSensitivity","l_caseSensitivity","l_commands","l_commands",
"l_confirm","l_confirm","l_easyRotate","l_easyRotate","l_info","l_info","l_minRedraw",
"l_minRedraw","l_neutralAcids","l_neutralAcids","l_out","l_out","l_print","l_print",
"l_racemicMC","l_racemicMC","l_readMolArom","l_readMolArom","l_showAccessibility",
"l_showAccessibility","l_showMC","l_showMC","l_showMinSteps","l_showMinSteps","l_showResCodeInSelection",
"l_showResCodeInSelection","l_showSites","l_showSites","l_showSpecialChar","l_showSpecialChar",
"l_showSstructure","l_showSstructure","l_showTerms","l_showTerms","l_showWater","l_showWater",
"l_updateLists","l_warn","l_warn","l_wrapLine","l_wrapLine","l_writeStartObjMC","l_writeStartObjMC",
"l_xrUseHydrogen","l_xrUseHydrogen","display string","label","label","Colors ( icm.clr )",
"learn from a training data set and create a predictive model","learn from a training data set and create a predictive model",
"join tables","Matrix symmetrization, extraction of left and right triangles.","SAR analysis",
"split group : derive replacement group arrays from a combinatorial library and a scaffold.",
"dsPocket and dsPocketRec","How-to: Ligand docking simulations.","How-to: Docking and Virtual Ligand Screening",
"Docking and virtual ligand screening. Overview.","How-to: Ligand docking simulations.",
"Finding pockets and docking a flexible ligand to a receptor","Finding pockets and docking a flexible ligand to a receptor",
"interactive docking and focused library design","modifyGroupSmiles","How-to: Docking and Virtual Ligand Screening",
"How-to: Ligand docking simulations.","GRAPHICS.hetatmZoom","GRAPHICS.lightPosition",
"Configuration file (icm.cfg)","IMAGE.lineWidth2D","lineWidth","lineWidth","SMILES and SMARTS",
"LinearModel","link residues to sequences and alignments","Link or assign reaction group arrays to a Rx positions on a chemical scaffold.",
"link internal variables of molecular object","link residues to sequences and alignments",
"link residues to sequences and alignments","link internal variables of molecular object",
"link internal variables of molecular object","Name","Name","sys (or unix): system command",
"unix","list","list","list the content of the icm binary file","list the content of the icm binary file",
"list available sequence databases","list available sequence databases","list graphic font : listing existing fonts for 2D and 3D graphics labels",
"Name","list molcart","list molcart","Sarray","minimize","listUpdateThreshold","listUpdateThreshold",
"General literature references","load","load","load conformation from stack","load conformation from stack",
"load trajectory frame conformation","load trajectory frame conformation","create database table view",
"load object from parray","load a structural alignment solution","load a structural alignment solution",
"load conformational stack from an object","loadEDS","loadEDSweb","Molsoft database files",
"Log","logical","logical","Logical operations","Logical variables","Logical operations",
"Logical variables","Tensor","write model: update or create the loop database file",
"timeLimit","Loop modeling and protein design","Loop modeling and protein design",
"Loop searches:","icmMacroShape: generating a smooth low resolution surface of a macromolecule.",
"Maps and factors","ICM-shell macros","ICM-shell macros","macro","macro","The main description of the ICM method",
"Main concepts and functions","Main concepts and functions","make","Creating 3D label objects",
"make angle","make background : spawning background jobs and processing their output.",
"make bond: forming a covalent bond","make bond: forming a covalent bond","make bonds in an atomic chain",
"make bonds in an atomic chain","make boundary: Poisson electrostatics","make boundary: Poisson electrostatics",
"make directory","make directory","make distance","make disulfide bond","make disulfide bond",
"make drestraint: extract distances structure","make drestraint: extract distances structure",
"make factor: FFT calculation of diffraction amplitudes and phases","make factor: FFT calculation of diffraction amplitudes and phases",
"make flat chem_array","make flat chem_array","Determining selection axis and making an arrow.",
"make grob image command to create a vectorized graphics object.","make grob matrix",
"make grob image command to create a vectorized graphics object.","make grob map command to contour electron density or grid potentials",
"make grob map command to contour electron density or grid potentials","make grob matrix",
"make grob potential","make grob potential","make grob skin or surface","make grob skin or surface",
"make hbond","make/store graphical image to image parray","make key","make key","make map",
"make map cell","make map factor : calculate electron density map from structure factors",
"make map factor : calculate electron density map from structure factors","make map potential: grid energies, converting crystallographic electron density maps",
"make map potential: grid energies, converting crystallographic electron density maps",
"Generate an attractive grid map from crystallographic electron density map for refinement",
"make molcart","SAR analysis","make pca","make peptide bond","make peptide bond",
"make plot: Adding a scatter plot or a histogram to a table","make reaction : applying reaction to the products",
"make sequence: extract from pdb or icm structure","make sequence: extract from pdb or icm structure",
"make sequences from alignment","make sequences from alignment","make torsion","make tree",
"make tree","make unique: reorder atoms in a unique order.","make unique: reorder atoms in a unique order.",
"Determining selection axis and making an arrow.","makeIndexChemDb","makeIndexChemDb",
"makeIndexSwiss","makeIndexSwiss","makePdbFromStereo: restore 3D coordinates from a stereo picture",
"makePdbFromStereo: restore 3D coordinates from a stereo picture","makePharma macro",
"makeSimpleDockObj","makeSimpleDockObj","makeSimpleModel","makeSimpleModel","learn from a training data set and create a predictive model",
"Notational conventions","mapAtomMargin","GRAPHICS.displayMapBox","map","rarray sequence projection",
"Smooth: transforming three-dimensional map functions.","make map factor : calculate electron density map from structure factors",
"Generate an attractive grid map from crystallographic electron density map for refinement",
"Electron density map ( *.map )","dcMethod","map","Mean","Min","Map","map","Smooth: transforming three-dimensional map functions.",
"Bracket","Rmsd","make grob skin or surface","mapAtomMargin","mapSigmaLevel","mapSigmaLevel",
"Assign arbitrary amino-acid property to a sequence","Maps and factors","Enumeration of stereoisomers",
"Tautomer enumeration","Combinatorial library enumeration","Index of compounds in chemarray with matching chemical patterns.",
"set tether append: Extending the identified substructure with neighboring atoms",
"matrix","matrix","Matrix : create new matrix.","Max","maxColorPotential","maxColorPotential",
"maxMemory","maxMemory","How to make a molecular movie from a Monte Carlo trajectory",
"mcBell","mcBell","mcJump","mcJump","mcShake","mcShake","mcStep","mcStep","How to rotate or translate one or several molecules with respect to the rest.",
"menu","menu","How to write a nice demo with menus to impress the boss","How to write a nice demo with menus to impress the boss",
"mergePdb macro","group table","read sarray","move : move multiple molecules between objects or merge two objects",
"move several molecules into ane molecule, auto-bond several molecules","How to merge several pdb files",
"Sum","How to merge and compress several conformational stacks","append two tables via two columns with matching values",
"join tables","How to make a hybrid model from several pdb files","mergePdb macro",
"mergePdb macro","Sum ( chemical )","move several molecules into ane molecule, auto-bond several molecules",
"Volume","Potential of mean force score","mfMethod","mfMethod","mfWeight","mfWeight",
"MIMEL","MIMEL","mimelDepth","mimelDepth","mimelMolDensity","mimelMolDensity","minimize",
"minTetherWindow","minTetherWindow","minimize","mncalls","minimize","minimize","minimize cartesian: full conformational optimization",
"minimize cartesian: full conformational optimization","minimize loop after build model",
"minimize loop after build model","minimize stack: minimize each stack conformation",
"minimize stack: minimize each stack conformation","minTetherWindow","minimize tether: threading a model with idealized geometry through a pdb-structure",
"drop","minimizeMethod","minimizeMethod","move several molecules into ane molecule, auto-bond several molecules",
"GRAPHICS.chainBreakStyle","GRAPHICS.chainBreakLabelDisplay","User field from a selection",
"Volume","mkUniqPdbSequences","mkUniqPdbSequences","Manipulations with molecules",
"mmcif","mmff .","mmff .","Type","show atom type","mnSolutions","mnSolutions","mncalls",
"mncalls","mncallsMC","mncallsMC","mnconf","mnconf","mnhighEnergy","mnhighEnergy",
"mnreject","mnreject","mnvisits","mnvisits","icmPmfProfile","modify","modify","Converting a chemical compound and rerooting the tree at the same time",
"Chemical modifications.","Charge or uncharge functional groups in compounds","Chemical Find and Replace",
"Standard representation of chemical groups","Chemcial Find and Replace","Update database table from ICM table",
"modifyGroupSmiles","Modules of ICM","Reading an MOL2-file into an ICM table.","Reading an sdf-file into an ICM table.",
"Writing/exporting an sdf/mol file","write index","mol","mol","Export a chemical or chemical array as sdf text.",
"Converting a chemical compound from a mol/sdf or mol2 files.","How to rotate or translate one or several molecules with respect to the rest.",
"Parray","mol2","mol2","Connect to a Mysql database or database file","Molcart","Specifying database in commands",
"Formula","Molecular objects in arrays and tables","parray","Manipulations with molecules",
"How to modify an ICM-object: some standard modifications.","How to modify an ICM-object: some standard modifications.",
"object, 3D molecular objects","ICM molecular objects","show area","skin","Versatile surface and structure views to elucidate protein function",
"Versatile surface and structure views to elucidate protein function","Predict","Molecule intro",
"How to create a new molecule or a residue for the ICM residue library","How to create a new molecule or a residue for the ICM residue library",
"set field","How to rotate one molecule around its own center of mass","How to rotate one molecule around its own center of mass",
"How to rotate or translate one or several molecules with respect to the rest.","The first steps",
"The first steps","Molecule intro","sort molecules in an object by mass or a user field",
"Molecule selection","mncallsMC","mnhighEnergy","mnreject","mnvisits","randomSeed",
"compareMethod","montecarlo","montecarlo","nLocalDeformVar","display trajectory : simulation trajectory",
"morph2tz : generating sterically plausible intermediate conformation for conformational morphing",
"more","more","display stack","morph2tz : generating sterically plausible intermediate conformation for conformational morphing",
"morph2tz : generating sterically plausible intermediate conformation for conformational morphing",
"display stack","set tether","store frame","Graphics controls","write movie","move",
"move","move alignment sequence","set atom","move several molecules into ane molecule, auto-bond several molecules",
"move table column","move table column","move a table row or parray element","s_sysMv",
"rename/move file","move several molecules into ane molecule, auto-bond several molecules",
"move ms_molecule: change tree topology","move ms_molecule: change tree topology",
"move : move multiple molecules between objects or merge two objects","move : move multiple molecules between objects or merge two objects",
"move alignment sequence","move alignment sequence","move table column","store frame",
"Image collection (type II)","How to make a molecular movie from a Monte Carlo trajectory",
"How to rotate and zoom in a script","How to rotate and zoom in a script","Select an equivalent selection in a different object",
"write movie","Molecule selection","cnMethodAverage","Creating a multi-part molecule in which parts are separately controlled.",
"TOOLS.pdbReadNmrModels","align: ICM multiple alignment algorithm","Calculating the matrix of pairwise percent identities between sequences of from a multiple sequence alignment.",
"stack","Export a chemical or chemical array as sdf text.","read binary and read binary list",
"Multiple sequence alignment","Reading SMILES file into a table","modify","How to modify an ICM-object: some standard modifications.",
"mute","mute","Connect to a Mysql database or database file","nLocalDeformVar","nLocalDeformVar",
"nProc","nProc","nSsearchStep","nSsearchStep","Label","setting names to chemical compounds in an array or a table",
"Min","script","nice","nice","How to make a nice high-resolution image","How to generate a non-redundant list of PDB sequences",
"Random","Standard representation of chemical groups","Toreal","Notational conventions",
"Notational conventions","s_reslib","GRAPHICS.surfaceDotDensity","Nof","show hbond",
"Select by number of sub-elements.","Nof","Select by number of sub-elements.","show clash",
"Iarray( stack ): numbers of visits for all stack conformations","Uniquely coloring by object, molecule, residue or atom",
"object, 3D molecular objects","Molecular objects in arrays and tables","set field",
"stack","Chemical function. Converting and Generating library compounds.","User field from a selection",
"set comment","File","translate","How to merge two ICM-objects","How to merge two ICM-objects",
"Object selection","vwExpandDisplay","How to color grob surface by depth","Predict",
"read grob","grob","Temperature","Getting help in built-in ICM html browser.","help",
"only","only","undisplay window","sys (or unix): system command","Version","unix",
"How to superimpose multiple compounds with similar activity?","optimizeHbonds macro",
"optimizeHbonds macro","optimizeHbonds macro","optimizeHbonds macro","Logical operations",
"Object selection","Other shell variables","i_out","superimpose","chemSuper3D","What can you do with ICM? (a program overview)",
"How to evaluate the pK shift","How to evaluate the pK shift","How to calculate packing density",
"How to calculate packing density","Delete array elements","GRAPHICS.hbondRebuild",
"GUI.windowLayout","write index","iProc","nProc","Delete array elements","parray",
"parrayTo3D macro","parrayToMol macro","Value from SOAP message","Match","Reading an html table into an ICM table",
"learn from a training data set and create a predictive model","display slide","Integral",
"script","ICM-shell macros","pattern","find database: sequence and pattern searches",
"pause","pause","mmcif","pdb or Protein Data Bank","pdb or Protein Data Bank","Date",
"Protein databank file ( or *.ent )","Reading an mmcif-file into an ICM chemical table.",
"How to merge several pdb files","How to merge several pdb files","How to generate a non-redundant list of PDB sequences",
"How to generate a non-redundant list of PDB sequences","pdbDirStyle","pdbDirStyle",
"peptide bond","peptide bond","Flexible peptide docking","Flexible peptide docking",
"Prediction of peptide structure from sequence","Prediction of peptide structure from sequence",
"Customization","Customization","How to plot","pharmacophore","Pharmacophore object",
"Coloring 2D molecules in a chemical table","Molcart","pharmacophore","Pharmacophores",
"set type property : contributions of atoms types to the property grids.","Pharmacophore object",
"Pharmacophores","Pharmacophores","plotRama and plotRamaEps","read string","make angle",
"plot","plot","How to make a 3D-surface plot of a 2D-function","How to make a 3D-surface plot of a 2D-function",
"How to create a new graphics object of a specific shape","How to create a new graphics object of a specific shape",
"plot area: show matrix values with color","plot area: show matrix values with color",
"How to plot a histogram","How to plot a histogram","How to plot","How to make a simple plot <i>y</i>=<b>F</b>( <i>x</i>)",
"How to make a simple plot <i>y</i>=<b>F</b>( <i>x</i>)","plot2DSeq","plot2DSeq",
"plotBestEnergies","plotBestEnergies","plotCluster","plotCluster","plotFlexibility",
"plotFlexibility","plotMatrix","plotMatrix","plotRama and plotRamaEps","plotRose",
"plotRose","plotSeqDotMatrix","plotSeqDotMatrix","plotSeqDotMatrix2","plotSeqDotMatrix2",
"plotSeqProperty","plotSeqProperty","3D plots of functions","How to plot the distance dependence of a van der Waals interaction",
"How to plot the distance dependence of a van der Waals interaction","learn from a training data set and create a predictive model",
"Column weights in PLS models and relative contributions of the descriptors.","Column weights in PLS models and relative contributions of the descriptors.",
"Column weights in PLS models and relative contributions of the descriptors.","mfMethod",
"icmPmfProfile","Parameters for \"mf\" mean force term ( icm.pmf )","Parameters for \"mf\" mean force term ( icm.pmf )",
"write png","png","png","dsPocket and dsPocketRec","icmPocketFinder macro","1. Where to dock. Building Receptor and Pocket Model",
"Xyz : coordinates of atoms or vertexes","parray","GRAPHICS.hydrogenDisplay","Predict",
"How to calculate the electrostatic free energy by the REBEL-method","REBEL","s_psViewer",
"REBEL","write pov","Quality measures of a regression or classification model.","predictSeq",
"predictSeq","LinearModel","Score","Score","Preferences","Preferences","The _startup file",
"prepSwiss","prepSwiss","Covalent neighbors of an atom","Tensor","How to perform a principal component analysis",
"How to perform a principal component analysis","Moment","print","print","print bar : showing progress bar from ICM shell",
"print image","print image","sprintf","printMatrix","printMatrix","printPostScript",
"printPostScript","printTorsions","printTorsions","printf","printf","profile","profile",
"What can you do with ICM? (a program overview)","print bar : showing progress bar from ICM shell",
"print bar : showing progress bar from ICM shell","Docking project setup","Find the name of the closest sequence in an alignment",
"How to calculate the electrostatic free energy by the REBEL-method","set property",
"set chemical view options","gpWeights","set type property : contributions of atoms types to the property grids.",
"set type property : contributions of atoms types to the property grids.","prosite",
"prosite","pattern","Sparse surface mesh points","Docking two proteins","Docking two proteins",
"How to perform local flexible docking of two protein molecules using the grid potentials",
"How to perform local flexible docking of two protein molecules using the grid potentials",
"plotRama and plotRamaEps","Predicting Polar Surface Area","Box","How to read compounds one by one from a Molcart table?",
"Run SQL queries","Returning one of two alternatives depending on a condition","quit",
"quit","Transfer real sequence properties by alignment","r_2out","r_2out","r_out",
"r_out","Radius","Radius","Interpolating colors by gradient","How to make a Ramachandran plot",
"How to make a Ramachandran plot","Random","Shuffle","randomSeed","randomSeed","randomSeed",
"randomize","randomize","randomize internal variables in molecules","randomize","randomize",
"Delete array elements","Find closest value in array","Reversing the order of elements in an array",
"rarray","Assign arbitrary amino-acid property to a sequence","rdBlastOutput","rdBlastOutput",
"rdSeqTab","rdSeqTab","make reaction : applying reaction to the products","Link or assign reaction group arrays to a Rx positions on a chemical scaffold.",
"read","read","read through filters: assign action by file extension.","read alignment",
"read alignment","read all","read all","read binary and read binary list","read binary and read binary list",
"read color","read color","read table into arrays","read table into arrays","read comp_matrix",
"read conf: conformations from file","read conf: conformations from file","read csd",
"read csd","read table in ICM or CSV/TSV format","read database","read database",
"read drestraint","read drestraint","read drestraint type","read drestraint type",
"reading records from a large file via index table","read factor","read factor","read from file",
"read from string","read from string","read http/ftp","read http/ftp","read grob",
"read grob","read html file","read html file","read iarray","read iarray","read index",
"read index","reading records from a large file via index table","read library","read library",
"read library mmff","read library mmff","read map","read map","read matrix","read matrix",
"l_neutralAcids","reading records from a large file via index table","read mol","read mol",
"reading records from a large file via index table","read mol2","read mol2","read object",
"read object","read object parray","TOOLS.pdbReadNmrModels","read pdb","read pdb",
"read pdb sequence","read pdb sequence","read profile","read profile","read prosite",
"read prosite","read rarray","read rarray","read sarray","read sarray","reading records from a large file via index table",
"read sequence","read sequence","read sequence database","read sequence database",
"Reading SMILES file into a table","read stack","read stack","read string","read string",
"read table in ICM or CSV/TSV format","read table in ICM or CSV/TSV format","Reading an html table into an ICM table",
"Reading an mmcif-file into an ICM chemical table.","Reading an sdf-file into an ICM table.",
"Reading an sdf-file into an ICM table.","Reading an MOL2-file into an ICM table.",
"Reading an MOL2-file into an ICM table.","read trajectory","read trajectory","read trajectory write",
"read trajectory write","read unix","read unix","read unix cat","read unix cat","Reading internal variables from a file",
"Reading internal variables from a file","Reading and setting a vew from a file of view parameters",
"Reading and setting a vew from a file of view parameters","Reading vrestraints from a file",
"Reading vrestraint types from a file","Reading vrestraint types from a file","read through filters: assign action by file extension.",
"readMolNames","readMolNames","read comp_matrix","make background : spawning background jobs and processing their output.",
"read string","s_pdbDirFtp","s_pdbDirWeb","Reading vrestraints from a file","real",
"rarray","Real shell variables","Generate an attractive grid map from crystallographic electron density map for refinement",
"Real shell variables","maxColorPotential","REBEL","REBEL","Building molcart indices for substructure, similarity or exact search",
"Recalculating dependent columns","Add dependent columns","1. Where to dock. Building Receptor and Pocket Model",
"1. Where to dock. Building Receptor and Pocket Model","set hydrogen : re-calculating coordinates of hydrogens from the connected heavy atoms",
"References","References","refineModel: globally optimize side-chains and anneal the backbone",
"refineModel: globally optimize side-chains and anneal the backbone","GRAPHICS.light",
"display new: refresh or unclip view","General literature references","Regular expressions (regexp)",
"Match","Repetitions and back-references</h4> ( <i>a</i> and <i>b</i> are simple regular expressions, e.g. a DNA base <tt>[ACTG]</tt>, or <tt>([hp]anky.*)</tt> ):",
"ICM regular expression syntax","learn from a training data set and create a predictive model",
"regul","regul","Regular expressions (regexp)","Index of an expression or an array of expressions",
"Match","read from file","Replace using regular expressions","minTetherWindow","minimize tether: threading a model with idealized geometry through a pdb-structure",
"regularization","regularization","How to prepare a PDB structure for energy calculations (regularization)",
"How to prepare a PDB structure for energy calculations (regularization)","rejectAction",
"rejectAction","Sql","accessMethod","Release notes","Release notes","remarkObj","remarkObj",
"Trim irrelevant expression tag sequences from the domain sequence.","delete file",
"Trim","Reading an html table into an ICM table","Trim","rename","rename","setting names to chemical compounds in an array or a table",
"rename/move file","rename molcart table","rename molcart table","rename object",
"rename/move file","rename object","rename object","rename object","write alignment",
"Shuffle","sort and reorder molecular objects","Replace a matching element of an array with another string.",
"A straight forward substitution. Replace without any interpretation of the search string.",
"Chemcial Find and Replace","randomSeed","Converting a chemical compound and rerooting the tree at the same time",
"How to select accessible, buried, hydrophobic, residues.","resLabelShift","resLabelShift",
"resLabelStyle","resLabelStyle","Other shell variables","Uniquely coloring by object, molecule, residue or atom",
"residue","residue","set tether","Calculating array of alignment strength values for each column",
"Matrix of residue-residue contacts","Area contact matrix","set field","GRAPHICS.chainBreakStyle",
"GRAPHICS.chainBreakLabelDisplay","Residue library ( icm.res or *.res )","Label",
"Iarray( [as_|rs_] number ): residue numbers of a selection","Outputting a table of residue numbers for corresponding positions",
"Smooth: three-dimensional averaging of residue properties","Group","Matrix of residue-residue contacts",
"Finding contiguous residue ranges with the String function","align number: renumber residues sequentially",
"l_showResCodeInSelection","String( selection ): converting selections into the text form",
"Res","How to create a table with the residue properties?","set tether","User field from a selection",
"Finding contiguous residue ranges with the String function","Residue selection",
"Image","Energy and Penalty Terms","set tether","set vrestraint","return","return",
"reverse complement dna sequence function","reverse complement dna sequence function",
"set grob coordinates and string label","set grob coordinates and string label","Reversing the order of elements in an integer array.",
"rgb","Color","ribbon","ribbon","GRAPHICS.chainBreakStyle","ribbonColorStyle","ribbonColorStyle",
"ribbonStyle","ribbonStyle","join tables","superimpose","Ring","Conformational Generator",
"set cartesian : imposing ring templates","Setting rotation or rocking mode","Quality measures of a regression or classification model.",
"rotate","rotate","rotate grob","rotate grob","rotate object","rotate object","rotate view",
"rotate view","Setting rotation or rocking mode","Axis","String","show table","rsWeight",
"rsWeight","Residue selection","call","Running ICM batch docking script with _dockScan",
"Running docking simulations","Rundock UNIX shell script","script","disulfide bond",
"s_alignment_rainbow","s_blastdbDir","s_blastdbDir","s_editor","s_editor","s_entryDelimiter",
"s_entryDelimiter","s_errorFormat","s_errorFormat","s_fieldDelimiter","s_fieldDelimiter",
"s_helpEngine","s_helpEngine","s_icmPrompt","s_icmPrompt","s_icmhome","s_icmhome",
"ICMHOME","s_imageViewer","s_imageViewer","s_inxDir","s_inxDir","s_javaCodeBase",
"s_javaCodeBase","s_labelHeader","s_labelHeader","s_lib","s_lib","s_logDir","s_logDir",
"s_out","s_out","s_pdbDir","s_pdbDir","s_pdbDirFtp","s_pdbDirWeb","s_printCommand",
"s_printCommand","s_projectDir","s_projectDir","s_prositeDat","s_prositeDat","s_psViewer",
"s_reslib","s_skipMessages : ignore specific error messages","s_skipMessages : ignore specific error messages",
"s_sysCp","s_sysLs and s_sysLtt","s_sysMv","s_sysRm","s_tempDir","s_tempDir","s_translateString",
"s_translateString","s_userDir","s_userDir","s_usrlib (obsolete)","s_usrlib (obsolete)",
"s_webEntrezLink","s_webEntrezLink","s_webViewer","s_webViewer","s_xpdbDir","s_xpdbDir",
"Structure analysis","Sparse surface mesh points","Delete array elements","sarray",
"transform string arrays in place","How to save and print the generated image","Writing/exporting an sdf/mol file",
"make/store graphical image to image parray","write png","Link or assign reaction group arrays to a Rx positions on a chemical scaffold.",
"Scoring","View","View","Name( string .. ) function","script","script","File","script",
"script","display off-screen","How to rotate or translate one or several molecules with respect to the rest.",
"write index","Reading an MOL2-file into an ICM table.","Reading an sdf-file into an ICM table.",
"setting names to chemical compounds in an array or a table","Writing/exporting an sdf/mol file",
"Export a chemical or chemical array as sdf text.","parray","Parray","Find chemical substructures.",
"How to search headers of the PDB entries","How to search headers of the PDB entries",
"How to search all Prosite patterns in your sequence","How to search all Prosite patterns in your sequence",
"find pattern","searchObjSegment","searchObjSegment","searchPatternDb","searchPatternDb",
"searchPatternPdb","searchPatternPdb","searchSeqDb","searchSeqDb","searchSeqFullPdb",
"searchSeqFullPdb","searchSeqPdb","searchSeqPdb","searchSeqProsite","searchSeqProsite",
"searchSeqSwiss","searchSeqSwiss","Sequence, searches and alignments","Tensor","assign sstructure: derive secondary structure from a pattern of hydrogen bonds",
"segMinLength","segMinLength","segment","segment","select","Select atoms with a certain number of covalently bonded neighbors.",
"Select atoms on rotatable (or non-rotatable) branches.","Select by coordinates, bfactor, occupancy or by user field",
"Selecting residues by centers of mass","Select by coordinates, bfactor, occupancy or by user field",
"Select","Select by coordinates, bfactor, occupancy or by user field","Select by coordinates, bfactor, occupancy or by user field",
"Align/color/select chemical by pattern or other properties","read from file","Select atoms interacting with a given selection",
"Select atoms interacting with a given selection","selectMinGrad","selectMinGrad",
"selectSphereRadius","selectSphereRadius","delete conf","Select","Select","table",
"How to select a diverse subset from a chemical table?","Next","How to select accessible, buried, hydrophobic, residues.",
"Iarray( as_ ): relative atom numbers of a selection","Selections","Select","Expand selection to the bonded terminal atoms: hydrogens, polar hydrogens or all.",
"Select by number, range, name or pattern","Examples","Functions returning selections",
"Select","Add small unselected residue ranges to a fragmented residue selection",
"Selections","Type","Selection levels","Add small unselected residue ranges to a fragmented residue selection",
"Select","String( selection ): converting selections into the text form","Selections",
"Selection Types","Named Atom/Residue/Molecule/Object/Variable Selections","Named Atom/Residue/Molecule/Object/Variable Selections",
"Atom selection","Functions returning selections","Molecule selection","Object selection",
"vs_out","Residue selection","Free and all variables (v_ and V_)","Free and all variables (v_ and V_)",
"Selections","Projecting properties from member sequence to alignment","Tr123","Tr321",
"sequence","sequence","Pairwise sequence alignment or sequence-structure alignment",
"alignTwoSequences  : interface macro to the `Align function","Pairwise sequence alignment and its significance",
"Sequence analysis","group sequence unique: clustering, redundancy removal and assembly",
"Index","Conservation score from an alignment projected to a structure","Matrix of inter-sequence distances",
"Similarity dotplot: alternative alignments and repetitive subdomains","make sequence: extract from pdb or icm structure",
"Calculating the matrix of pairwise percent identities between sequences of from a multiple sequence alignment.",
"Sequence analysis","Trim irrelevant expression tag sequences from the domain sequence.",
"Find the name of the closest sequence in an alignment","Array of sequences","pattern",
"Outputting a table of residue numbers for corresponding positions","set area sequence : positional factors for sequence alignment",
"group sequence unique: clustering, redundancy removal and assembly","find database: sequence and pattern searches",
"delete sequence","alignSS  : sequence alignment guided by secondary structure and accessibility",
"Transfer real sequence properties by alignment","sequence","Projecting properties from alignment to a member sequence.",
"Projecting properties from member sequence to alignment","Pairwise sequence alignment or sequence-structure alignment",
"sequenceBlock","sequenceLine","sequenceBlock","sequenceBlock","sequenceColorScheme",
"sequenceColorScheme","sequenceLine","sequenceLine","Sequence, searches and alignments",
"delete sequence","set family of commands","set family of commands","set a flag of an alternative atom position",
"set area sequence : positional factors for sequence alignment","set area sequence : positional factors for sequence alignment",
"set atom","set atom","set background image in graphics","set bfactor","set bfactor",
"set biological symmetry to an object","Transfer chemical structure, formal charges and bonds, from smiles or a chemical.",
"set bond type","set bond type","Transfer chemical structure, formal charges and bonds, from smiles or a chemical.",
"set cartesian : imposing ring templates","set chain symbol","set chain symbol","set charge",
"set charge","set charge formal","set charge formal","set charge mmff","set charge mmff",
"set chiral","set chiral","set color directly and without graphics","set comment",
"set comment","set a flag of an alternative atom position","set comment to a sequence",
"set comment to a sequence","set comp_matrix: redefine residue comparison matrix.",
"set the current map","Setting the current object","set directory","set directory",
"set drestraint","set drestraint","set drestraint type","set drestraint type","set electrostatic radii",
"set error","set field","set field","set font","set font","set font of a 3D label",
"set font of a 3D label","Make an alignment , an html document, or a table active.",
"set format for a table column","set grob coordinates and string label","set grob coordinates and string label",
"set grob coordinates and string label","set crystallographic symmetry group","set group column",
"set hydrogen : re-calculating coordinates of hydrogens from the connected heavy atoms",
"set key","set key","set label","set label","set label for 3D labels","set labels for 2D chemicals",
"set labels for 2D chemicals","set label distance","set label distance","set labels for table rows",
"set the current map","set the current Molcart connection","set values of internal coordinates",
"setting names to chemical compounds in an array or a table","setting names to chemical compounds in an array or a table",
"Setting the current object","set occupancy","set occupancy","set plane","set plane",
"set property","set property","set chemical view options","set chemical view options",
"set xstick radii","set randomize : reset the randomSeed","set randomize : reset the randomSeed",
"set randomize : reset the randomSeed","set resolution","set resolution","set site",
"set site to a residue selection","set site to a residue selection","set slide","set sstructure backbone",
"set sstructure backbone","set sstructure to sequence","set sstructure to sequence",
"set stack properties","set stack properties","store conf","set stereo","set stereo",
"set swiss","set swiss","set symmetry to a torsion","set biological symmetry to an object",
"set crystallographic symmetry group","set crystallographic symmetry group","set symmetry to a torsion",
"set table","set table","set energy or penalty terms","set energy or penalty terms",
"set tether","set tether append: Extending the identified substructure with neighboring atoms",
"set tether append: Extending the identified substructure with neighboring atoms",
"set texture","set atom type","set atom type","set type mmff","set type mmff","set molecule type",
"set object type","set object type","set type property : contributions of atoms types to the property grids.",
"set type sequence","set type sequence","set positional variables to place a molecule to polyhedral vertices",
"set positional variables to place a molecule to polyhedral vertices","set 3D view rotation, translation and size",
"set 3D view rotation, translation and size","set vrestraint","set vrestraint","set vrestraint variable",
"set van der Waals radii","set electrostatic radii","set van der Waals radii","set size and position of ICM graphics window",
"set size and position of ICM graphics window","set xstick radii","set xstick radii",
"setResLabel","setResLabel","set comp_matrix: redefine residue comparison matrix.",
"set stack properties","set values of internal coordinates","sfWeight","sfWeight",
"Sequence, searches and alignments","GRAPHICS.lightPosition","ICM-shell","(ICM)-shell",
"ICM-shell","print bar : showing progress bar from ICM shell","Warning : the ICM warning message",
"shineStyle","shineStyle","shininess","shininess","show","show","show profile,rarray,real,sarray,string",
"show alias","show alias","show alignment","show alignment","show area","show atoms",
"show atom type","show atom type","show atoms","show clash","show clash","show color list",
"show color list","show arrays as parallel vertical columns","show arrays as parallel vertical columns",
"show comp_matrix","show table in database format","show drestraint","show drestraint",
"show drestraint type","show drestraint type","show energy","show energy","show energy gradient",
"show energy gradient","show hbond","show hbond","show bond exact","show bond exact",
"show table in html format","show table in html format","show iarray","show iarray",
"show integers","show integers","show key","show key","show label","show label","show library",
"show library","show link","show link","show logical","show logical","show map","show map",
"show mol","show mol","show mol2","show mol2","show molecule","show molecule","show objects, molecules, residues, atoms and variables",
"show objects, molecules, residues, atoms and variables","show object","show object",
"show pdb","show pdb","show supported pharmacophore types","show supported pharmacophore types",
"show preferences","show preferences","show profile,rarray,real,sarray,string","show residue",
"show residue","show residue type","show residue type","show segment","show segment",
"show sequence","show sequence","show shell variable","show site","show site","show stack",
"show stack","show shell variable","show table","show table","show table in database format",
"show terms","show terms","show tethers","show tethers","show version","show version",
"show volume","show volume","calculate volume of blobs of map density.","calculate volume of blobs of map density.",
"show vrestraints","show vrestraint type","show vrestraint type","show vrestraints",
"show comp_matrix","GRAPHICS.hbondMinStrength","evalSidechainFlex macro","evalSidechainFlex macro",
"GROB.contourSigmaIncrement","Calculate normalized 'area under curve' for the hit enrichment histogram vs rank or square root of hit rank",
"find molcart : chemical search in Molcart database","find table : chemical search in ICM table",
"Simple expressions","A straight forward substitution. Replace without any interpretation of the search string.",
"compress graphical objects","timeLimit","temperature","Simulations","Coloring molecular objects",
"site","site","set site","Retrieving sequence site information","delete site","Retrieving sequence site information",
"cnMethodAverage","skin","skin","Analytical molecular surface (skin)","Analytical molecular surface (skin)",
"add slide to a slideshow.","Slide","Slide","display slide","View","add slide to a slideshow.",
"display slide","Slide","sln","sln","Ring","Index of compounds in chemarray with matching chemical patterns.",
"SMILES and SMARTS","SMILES and SMARTS","Parray","Smooth: expanding alignment gaps",
"store frame","Smooth: transforming three-dimensional map functions.","Smooth","icmMacroShape: generating a smooth low resolution surface of a macromolecule.",
"SOAP services and communications","Trim","Predict","surfaceMethod","sfWeight","surfaceMethod",
"surfaceAccuracy","GRAPHICS.surfaceDotDensity","GRAPHICS.surfaceProbeRadius","show area",
"sort","sort","sort and reorder molecular objects","sort array(s)","sort array(s)",
"sort molecules in an object by mass or a user field","sort molecules in an object by mass or a user field",
"sort and reorder molecular objects","Sorting a stack of conformations","Sorting a stack of conformations",
"sort table","sort table","sortSeqByLength","sortSeqByLength","Transform family of functions.",
"make background : spawning background jobs and processing their output.","Toreal",
"Quality measures of a regression or classification model.","split","split","Splitting multiple values in each cell of a column into single-value cells by multiplying rows.",
"split grob","split grob","split group : derive replacement group arrays from a combinatorial library and a scaffold.",
"Splitting an object into separate molecules","Splitting an object into separate molecules",
"Splitting a table to arrays","Splitting multiple values in each cell of a column into single-value cells by multiplying rows.",
"Splitting a table to arrays","Changing the position of tree cursor (separator) and calculating new cluster numbers",
"Changing the position of tree cursor (separator) and calculating new cluster numbers",
"Finding contiguous residue ranges with the String function","sprintf","sprintf",
"Run SQL queries","set the current Molcart connection","Database information","Information from databases",
"Database information","Information from databases","Molsoft database files","Converting a square symmetrical matrix to a table with pairs of elements.",
"ssThreshold","ssThreshold","ssWeight","ssWeight","disulfide bond","nSsearchStep",
"ssearch","ssearch","ssearchStep","ssearchStep","assign sstructure segment","mnconf",
"mnhighEnergy","mnvisits","compareMethod","set stack properties","store","store conf",
"Iarray( stack ): numbers of visits for all stack conformations","Extracting parameters of stack conformations",
"conf","stack","stack","compare: setting conformation comparison parameters for the montecarlo command",
"delete conf","Appending a molecule or a ligand stack to an existing stack","Appending a molecule or a ligand stack to an existing stack",
"How to merge and compress several conformational stacks","How to merge and compress several conformational stacks",
"Standard representation of chemical groups","Rmsd","Chemical modifications.","The _startup file",
"Srmsd","GRAPHICS.hbondRebuild","GRAPHICS.stereoMode","Enumeration of stereoisomers",
"set stereo","How to reconstruct a structure from a published stereo picture","How to reconstruct a structure from a published stereo picture",
"Enumeration of stereoisomers","l_racemicMC","stick","stick","store","store","store conf",
"store conf","store frame","make/store graphical image to image parray","store conformational stack inside an object",
"store","Strength and color of a hydrogen bond","string","string","Sarray","sarray",
"Trim","Extracting a substring or reversing the order of characters in a string",
"set font of a 3D label","Regular expressions (regexp)","Match","String variables",
"String variables","strip","strip","List name of the fields in SOAP struct object",
"align two molecules by their backbone topology","Local pairwise structural alignment",
"Local pairwise structural alignment","find alignment : automated structural alignment",
"align two molecules by their backbone topology","Structure analysis","Comparing two different, but structurally homologs proteins, via residue-residue contact conservation.",
"How to manipulate with structure factors","How to manipulate with structure factors",
"Res(ali ..): from sequence positions in sub-alignment to residue selection","Matrix : extract a sub-matrix",
"Extracting pairwise alignment sequences from a multiple alignment","Map","ICM-shell macros",
"Subsets and Index Expressions","Match","String","Extracting a substring or reversing the order of characters in a string",
"find molcart : chemical search in Molcart database","find table : chemical search in ICM table",
"find molecule: chemical substructure search","TOOLS","superimpose","superimpose",
"How to optimally superimpose two 3D structures","How to optimally superimpose two 3D structures",
"Iterative search of the best atom pair subset for superposition.","ICM distribution and support",
"display slide","surface area","show area","calcArea : calculating solvent accessible surface area",
"surface area","surface area","REBEL","set color directly and without graphics","GRAPHICS.surfaceDotDensity",
"surfaceMethod","Sparse surface mesh points","Xyz : atom coordinates and surface points",
"sfWeight","surfaceAccuracy","surfaceAccuracy","surfaceMethod","surfaceMethod","surfaceTension",
"surfaceTension","svariable , or ICM-shell variable","svariable , or ICM-shell variable",
"How to make a hybrid model from several pdb files","set swiss","swissFields","swissFields",
"set site","Matrix symmetrization, extraction of left and right triangles.","Transform family of functions.",
"Transformations and symmetry","defSymGroup","sys (or unix): system command","unix",
"sys (or unix): system command","s_sysCp","s_sysMv","s_sysLs and s_sysLtt","s_sysRm",
"Delete plots from the table","set property","set chemical view options","table",
"table","Table headers and actions","Name","set format for a table column","make plot: Adding a scatter plot or a histogram to a table",
"Normalize","group table","table","Pairwise table expressions:","Pairwise table expressions:",
"Converting matrix into table columns","table","Exporting a table from an interatomic distance object of hydrogen bond parray.",
"Table operations","Plotting table data","Plotting table data","make pca","show table",
"move a table row or parray element","set labels for table rows","Label","Index",
"table subsets:","table subsets:","web table: shows an icm table with a web browser",
"targa","Tautomer enumeration","temperature","tempLocal","tempLocal","temperature",
"temperature","temperature","Template constrained docking","Matrix","Configuration file (icm.cfg)",
"GUI and Programming Dialogs in ICM","Energy and Penalty Terms","Energy and Penalty Terms",
"hbCutoff","test","test binary","Getarg","writing tethers","tether","tether","Match",
"Find text in tables.","script","grob","targa","then","then","minimize tether: threading a model with idealized geometry through a pdb-structure",
"Pairwise sequence alignment or sequence-structure alignment","Tr123","Tr321","Image",
"tif files","tif files","Date","timeLimit","timeLimit","tolFunc","tolFunc","tolGrad",
"tolGrad","Predicting Polar Surface Area","Compare by deviations of internal coordinates/torsions.",
"Counting number of atom pairs, triples and quadruplets in distance objects","Predicting Polar Surface Area",
"load trajectory frame conformation","store","store frame","trajectory","trajectory",
"MC simulation trajectory ( *.trj )","display trajectory : simulation trajectory",
"display trajectory : simulation trajectory","transform","transform molecular objects or grobs",
"transform","transform molecular objects or grobs","transform molecular objects or grobs",
"transform string arrays in place","transformation vector","transformation vector",
"Transformations and symmetry","Applying crystallographic transformation","translate",
"translate","set grob coordinates and string label","grob","write png","display grob",
"GRAPHICS.transparency","make tree","Name( tree .. ) function","Hierarchical cluster trees",
"delete a tree from a table header array","Name( tree .. ) function","Selecting N representatives from clusters",
"transform string arrays in place","Trim","Quality measures of a regression or classification model.",
"make sequences from alignment","Trim","read table in ICM or CSV/TSV format","Distance between two alignments",
"read html file","Returns specific type of the SOAP object","tzMethod","tzMethod",
"tzWeight","tzWeight","Charge or uncharge functional groups in compounds","display new: refresh or unclip view",
"specifying the font in ICM","undisplay","undisplay","undisplay window","undisplay window",
"unfix","unfix","Uniquely coloring by object, molecule, residue or atom","unique",
"unique","make unique: reorder atoms in a unique order.","group table by column with non-unique values",
"Name","Name","make unique: reorder atoms in a unique order.","sys (or unix): system command",
"unix","read from file","delete link","delete link","delete link","Update database table from ICM table",
"Release notes","l_updateLists","Table","GRAPHICS.atomValueCircles","USER environment: $HOME/.icm directory",
"LIBRARY.men","set field","Area","individual user_startup.icm , gui-controls and menus :",
"Customization","User's Guide","User's Guide","Selection Types","GRAPHICS.surfaceProbeRadius",
"varLabelStyle","varLabelStyle","set vrestraint","Free and all variables (v_ and V_)",
"Norm of a vector","Vector product","Normalize","Coloring grob by matrix of RGB values for each vertex.",
"Connectivity Matrix for Grob Vertices","Coloring grob by matrix of RGB values for each vertex.",
"make sequences from alignment","GUI.windowLayout","Coloring grob by matrix of RGB values for each vertex.",
"vicinity","vicinity","write movie","View","Info","set 3D view rotation, translation and size",
"Slide","virtual atoms and variables","virtual atoms and variables","Chemical modifications.",
"Counting chemical combinatorial library sizes.","Recalculating dependent columns",
"How-to: Docking and Virtual Ligand Screening","Docking and virtual ligand screening. Overview.",
"How-to: Ligand docking simulations.","How-to: Virtual Ligand Screening","Scanning a database of flexible ligands",
"visitsAction","visitsAction","How-to: Docking and Virtual Ligand Screening","Docking and virtual ligand screening. Overview.",
"How-to: Ligand docking simulations.","How-to: Virtual Ligand Screening","Running VLS jobs in PBS UNIX cluster environment",
"How-to: Virtual Ligand Screening","Scanning a database of flexible ligands","Running VLS jobs in PBS UNIX cluster environment",
"Docking and virtual ligand screening. Overview.","Parallelization","Analysis of the results",
"Where to find the scores of the compounds","Score Threshold","Introduction","volume",
"volume","vrestraint","vrestraint","Multidimensional variable restraints ( *.rs )",
"vrestraint type","vrestraint type","Multidimensional variable restraint types ( icm.rst or *.rst )",
"Free and all variables (v_ and V_)","vs_out","vs_out","vwCutoff","vwCutoff","vwExpand",
"vwExpand","vwExpandDisplay","vwMethod","vwMethod","vwSoftMaxEnergy","vwSoftMaxEnergy",
"wait","wait","Warning : the ICM warning message","l_warn","dielConstExtern","waterRadius",
"waterRadius","make grob image command to create a vectorized graphics object.","web",
"web","web table: shows an icm table with a web browser","web table: shows an icm table with a web browser",
"webEntrezOption","webEntrezOption","TOOLS","while","while","Replace a matching element of an array with another string.",
"Smooth","Retrieve window layout string from a slide","View","windowSize","windowSize",
"write movie","wire","wire","wireBondSeparation","wireBondSeparation","wireStyle",
"wireStyle","undisplay window","write","write","write 2D image","write alignment",
"write alignment","write several arrays","write several arrays","write binary","write binary",
"write index blast","write column","write column","write database","write database",
"write drestraint","write drestraint","write drestraint type","write drestraint type",
"write factor","write factor","write grob","write grob","write html","write html",
"write iarray","write iarray","write image","write image","write 2D chemical image",
"write 2D image","write index","write index","write index blast","write index blast",
"write library","write library","write map","write map","write matrix","write matrix",
"write model: update or create the loop database file","write model: update or create the loop database file",
"write mol","write mol","write mol2","write mol2","write molcart","write movie","write object",
"write object","write object (parray)","write object simple","write pdb","write pdb",
"write png","write postscript","write postscript","write pov","write pov","write pov",
"write binary","write rarray","write rarray","write sarray","write sarray","write sequence",
"write sequence","write session","write session","write several arrays","write object simple",
"write stack","write stack","write table","write table","Writing/exporting an sdf/mol file",
"Writing/exporting an sdf/mol file","write html","writing tethers","writing tethers",
"display trajectory : simulation trajectory","write vs_var","write vs_var","Match",
"read map","xrMethod","xrMethod","xrWeight","xrWeight","Generate an attractive grid map from crystallographic electron density map for refinement",
"xstick","xstick","How to generate a series of intermediates between the two given structures",
"ZEGA","ZEGA","Sensitive Sequence Similarity Search, ZEGA","Logical operations");

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"2.17.28","2.16.12","2.16.53","2.16.53","2.26.59.11","2.26.100","2.26.100","2.26.100.1",
"2.26.100.1","2.19.29","2.19.29","2.20.14","2.26.101","2.26.101","2.27.113.1","2.27.133.1",
"2.27.141.8","2.27.174","2.15.23","2.15.23","2.26.102.29","5.10.7","5.10.7","2.16.54",
"2.16.54","2.19.30","2.19.30","2.26.97","2.26.102","2.26.102","2.26.102.20","2.26.102.1",
"2.26.102.1","2.26.102.8","2.26.102.8","2.26.102.2","2.26.102.2","2.26.102.23","2.26.102.12",
"2.26.102.12","2.26.102.13","2.26.102.13","2.26.102.14","2.26.102.14","2.26.102.15",
"2.26.102.15","2.26.102.16","2.26.102.16","2.26.102.17","2.26.102.17","2.26.102.18",
"2.26.102.18","2.26.102.3","2.26.102.3","2.26.102.19","2.26.102.19","2.26.102.21",
"2.26.102.20","2.26.102.22","2.26.102.22","2.26.102.23","2.26.102.23","2.26.102.24",
"2.26.102.24","2.26.102.25","2.26.102.25","2.26.102.6","2.26.102.6","2.26.102.26",
"2.26.102.26","2.26.102.27","2.26.102.27","2.26.102.28","2.26.102.28","2.26.102.7",
"2.26.102.29","2.26.102.30","2.26.102.30","2.26.102.32","2.26.102.31","2.26.102.33",
"2.26.102.33","2.26.102.34","2.26.102.35","2.26.102.35","2.26.102.36","2.26.102.36",
"2.26.102.36","2.26.102.2","2.26.102.4","2.26.102.4","2.26.102.5","2.26.102.5","2.26.102.37",
"2.26.102.37","2.26.102.38","2.26.102.38","2.26.102.8","2.26.102.31","2.26.102.39",
"2.26.102.39","2.26.102.10","2.26.102.10","2.26.102.11","2.26.102.11","2.26.102.18",
"2.26.102.9","2.26.102.9","2.26.23.17","2.26.102.40","2.26.102.40","2.27.77","2.26.76.25",
"2.19.31","2.19.31","2.16.55","2.16.55","2.26.59.30","5.10.8","5.10.8","3.8.8","5.10.9",
"5.10.9","1.4.3.6","2.11.3");


function GetFormPtrByName( form_name ) {
  if (form_name == '') form_name='myform';
  for (var i=0;i<document.forms.length;i++) {
    var e = document.forms[i];
    if (e.name == form_name ) {
      return e;
    }
  }
  alert('javascript error: Form with name '+form_name+' not found');
  return null;
}
function GetFormElementByName( frm, e_name, e_type ) {
  var e_ptr=null;
  for (var i=0;i<frm.length;i++) {
    var e = frm.elements[i];
    if (e.name == e_name && e.type==e_type) {
      e_ptr = e;
      break;
    }
  }
  return e_ptr;
}
function popup(mylink, windowname)
{
if (! window.focus)return true;
var href;
if (typeof(mylink) == 'string')
href=mylink;
else
href=mylink.href;
window.open(href, windowname, 'width=600,height=500,scrollbars=yes');
return false;
}
function tx2html_search() {
  var frm=GetFormPtrByName('tx2html_form');
  if (frm==null) return;
  var txf = GetFormElementByName(frm,'text1','text');
  if (txf==null) return;
  var k=txf.value;
  document.cookie= 'wm_javascript=search::' + escape(k)+';\n';
  popup('tx2htmlsearch.html','Search Results');
}
function tx2html_onFocus() {
  var frm=GetFormPtrByName('tx2html_form');
  if (frm==null) return;
  var txf = GetFormElementByName(frm,'text1','text');
  if (txf==null) return;
  txf.select(); 
}
function tx2html_onEnter() {
  var frm=GetFormPtrByName('tx2html_form');
  if (frm==null) return;
  var txf = GetFormElementByName(frm,'text1','text');
  if (txf==null) return;
  if (txf.value!='') tx2html_search();  
}
function tx2html_showHit(num) {
  window.opener.location = paths[num];
  return;
}
function tx2html_search_result() {
  var s      = document.cookie;
  var ss     = s.split(';');
  var sss    = '';
  var search = '';
  var w      = '';
  var cache  = new Array();

  for (i=0;i<ss.length;i++) {
    if ( ss[i].indexOf('wm_javascript=search::')!=-1 ) sss = ss[i].split('::')[1];
  }
  search = unescape(sss);
  if (search[length]==';') search=search.substring(0, search.length-1);
  document.write('<table width=100%><tr>');
  document.write('<td width="99%" colspan="2"><b>Search for:</b> ' + search +'</td>');
  document.write('<td width=1%>[&nbsp;<a href="javascript:window.close();">Close</a>&nbsp;]</td>');
  document.write('</tr></table><hr size=1>');
  search=search.toLowerCase();
  for (i=0;i<keys.length;i++) {
    if ( keys[i].toLowerCase().indexOf(search) != -1 && cache[chapters[i]] != 1) {
      cache[chapters[i]]=1;
      w += '<tr>';
      w += '<td nowrap width="1%">' + keys[i] + '</td>\n';
      w += '<td width="98%">' + titles[i] + '</td>\n';
      w += '<td width="1%"><a href="javascript:tx2html_showHit('+i+');">' + chapters[i] + '</a></td>';
      w += '</tr>';
    }
  }
  if (w=='') document.write('Sorry, no keywords matched your search.');
  else {
    w = '<tr><th align=left>Keyword</th><th align=left>Title</th><th align=left>Chapter</th></tr>'+w;
    w = '<table border=0 width=100% cellspacing=15 cellpadding=0>\n' + w + '\n</table>';
    document.write(w);
  }
}