Mar 10 2017 Feedback.
Contents
 
Introduction
Reference Guide
Getting Started
Protein Structure
Molecular Graphics
Slides & ActiveICM
Tutorials
 
Index

Index

2D, 5.8.8     dnaWormRadius, 3.7.9
3D, 5.6, 5.8.8, 7.2     font Scale, 3.7.7
     interactive ligand editor, 2.4.5     fontColor, 3.7.7
     object, 5.3.8     fontLineSpacing, 3.7.7
     print, 5.7     grobLineWidth, 3.7.3
     printing, 5.7     hbond Ball Period, 3.7.1
     stereo, 5.6               Style, 3.7.1
4D docking, 3.2.2     hbondAngleSharpness, 3.7.1
ActiveICM, 2.3.1.11     hbondMinStrength, 3.7.1
Atom Single Style, 3.7.3     hbondStyle, 3.7.1
Beep, 3.7.11     hbondWidth, 3.7.1
BlastDB Directory, 3.7.2     hetatmZoom, 3.7.1
     alphas, 5.8.3     hydrogenDisplay, 3.7.1
COLLADA, 2.3.1.6     light, 3.7.3
CPK, 2.4.1     lightPosition, 3.7.3
ChEMBL, 3.2.3     mapLineWidth, 3.7.3
Clash Threshold, 3.7.10     occupancy Radius Ratio, 3.7.3
DNA, 3.3     occupancyDisplay, 3.7.3
Dock Directory, 3.7.2     quality, 3.7.3
Drug Bank, 3.2.8     rainbow Bar Style, 3.7.4
Editor, 3.7.2     resLabelDrag, 3.7.7
FILTER.Z, 3.7.2     resize Keep Scale, 3.7.3
     gz, 3.7.2     ribbonRatio, 3.7.9
     uue, 3.7.2     ribbonWidth, 3.7.9
FTP.createFile, 3.7.11     ribbonWorm, 3.7.9
     keep File, 3.7.11     rocking, 3.7.4
     proxy, 3.7.11          Range, 3.7.4
Filter.zip, 3.7.2          Speed, 3.7.4
Force Auto Bond Typing, 3.7.11     selectionStyle, 3.7.3
GIF, 2.3.1.14     site Label Drag, 3.7.7
GRAPHIC.store Display, 3.7.3               Shift, 3.7.7
     NtoC Rainbow, 3.7.4     siteArrow, 3.7.7
     alignment Rainbow, 3.7.4     stereoMode, 3.7.3
     atomLabelShift, 3.7.7     stickRadius, 3.7.1
     ballStickRatio, 3.7.1     surfaceDotDensity, 3.7.3
     center Follows Clipping, 3.7.3     surfaceDotSize, 3.7.3
     clash Style, 3.7.3     surfaceProbeRadius, 3.7.3
     clashWidth, 3.7.3     transparency, 3.7.3
     clip Grobs, 3.7.3     wire Width, 3.7.1
          Skin, 3.7.3     wormRadius, 3.7.9
          Static, 3.7.3     xstick Backbone Ratio, 3.7.1
     discrete Rainbow, 3.7.4          Hydrogen Ratio, 3.7.1
     displayLineLabels, 3.7.7          Style, 3.7.1
     displayMapBox, 3.7.3          Vw Ratio, 3.7.1
     distance Label Drag, 3.7.1GROB.arrowRadius, 3.7.3
     dnaBallRadius, 3.7.9     atomSphereRadius, 3.7.3
     dnaRibbonRatio, 3.7.9     contourSigmaIncrement, 3.7.3
     dnaRibbonWidth, 3.7.9     relArrow Size, 3.7.3
     dnaRibbonWorm, 3.7.9     relArrowHead, 3.7.3
     dnaStickRadius, 3.7.9GUI.auto Save, 3.7.4

     enumberation Memory Limit, 3.7.11     Search, 2.3.2.12, 2.3.2.13, 2.3.2.14, 2.3.2.15, 2.3.2.16
     max Nof Recent Files, 3.7.11          Field, 2.3.2.13
          Sequence Length, 3.7.4          Homology, 2.3.2.15
     splash Screen Delay, 3.7.11          Identity, 2.3.2.14
               Image, 3.7.11          Sequence, 2.3.2.16
     table Row Mark Colors, 3.7.4     convert, 4.1.2
     workspace Folder Style, 3.7.4PFAM, 2.3.1.6
     workspaceTabStyle, 3.7.4PLOT.Yratio, 3.7.8
HTTP.proxy, 3.7.11     color, 3.7.8
     support Cookies, 3.7.11     date, 3.7.8
     user Agent, 3.7.11     draw Tics, 3.7.8
How To Guide, 2     font, 3.7.8
Html, 3.2.1.6     fontSize, 3.7.8
Http Read Style, 3.7.11     labelFont, 3.7.8
Hydrogen.bond, 3.7.5     lineWidth, 3.7.8
ICM Browser How To, 2.1     logo, 3.7.8
IMAGE.bondLength2D, 3.7.6     markSize, 3.7.8
     color, 3.7.6     orientation, 3.7.8
     compress, 3.7.6     paper Size, 3.7.8
     gammaCorrection, 3.7.6     previewer, 3.7.8
     generateAlpha, 3.7.6     rainbowStyle, 3.7.8
     lineWidth, 3.7.6     seriesLabels, 3.7.8
     lineWidth2D, 3.7.6PNG, 2.3.1.14, 3.1.14
     orientation, 3.7.6Projects Directory, 3.7.2
     paper Size, 3.7.6Prosite Dat, 3.7.2
     previewResolution, 3.7.6     Viewer, 3.7.2
     previewer, 3.7.6Pub Chem, 3.2.9
     print, 3.7.6PubMed, 3.2.1.7
     printerDPI, 3.7.6Pubchem, 3.2.9
     scale, 3.7.6RMSD, 4.3.2
     stereoAngle, 3.7.6RNA, 3.3
     stereoBase, 3.7.6Real Format, 3.7.10
     stereoText, 3.7.6     Label Shift, 3.7.7
Icm Prompt, 3.7.10          Style, 3.7.7
Inx Directory, 3.7.2SEQUENCE.site Colors, 3.7.4
JPEG, 2.3.1.14SITE.label Style, 3.7.7
KMZ, 2.3.1.6     labelOffset, 3.7.7
Log Directory, 3.7.2     wrap Comment, 3.7.7
MOVIE.frame Grab Mode, 3.7.4SLIDE.ignore Background Color, 3.7.4
Map Atom Margin, 3.7.10          Fog, 3.7.4
     Sigma Level, 3.7.10Select Min Grad, 3.7.10
     File Size Mb, 3.7.11Show Res Code In Selection, 3.7.7
Mnconf, 3.7.10SureChEMBL, 3.2.4
Movie.fade Nof Frames, 3.7.4Swissprot, 2.3.1.6
     quality, 3.7.4     Dat, 3.7.2
          Auto, 3.7.4Temp Directory, 3.7.2
Output Directory, 3.7.2USER.email, 3.7.11
PDB, 3.2.1.6, 4.1.2     friends, 3.7.11
     Directory, 3.7.2     full Name, 3.7.11
          Style, 3.7.2     organization, 3.7.11

Var Label Style, 3.7.7bonding, 5.1.8
Water Radius, 3.7.10     preferences, 3.7.1
Wire Style, 3.7.1box, 3.7.7
XPDB Directory, 3.7.2build, 5.10.6.1
Xstick, 2.4.1buttons, 6.14
a-bright, 2.4.2bye, 2.3.1.18
active, 6.7     alpha, 5.1.10
activeICM, 6.8     trace, 5.1.10
activeicm, 6.7, 6.12, 6.14, 6.14.1ca-trace, 5.1.10
     advanced, 6.14cache, 6.14.1
     background images, 6.15center, 2.3.3.19, 3.1.3, 5.12, 5.12.5
     control, 6.13change selection, 3.6.7
activeicmjs, 6.16     speed range, 5.10.6.2
album, 5.15.3charge, 5.8.2
align, 3.1.11chembl, 3.2.3, 3.2.4
alpha, 2.4.2chemical spreadsheet, 3.2.3
     channel, 3.7.6     substructure, 3.2.1.1
ambient, 2.4.2chi, 5.8.5
amino acid, 3.3clash, 3.7.5
anaglyph, 5.6clear display and planes, 2.3.3.2
angle, 5.8.5, 5.9, 5.12.6     selection, 3.6.6
animate, 2.3.3.14, 5.10.6     planes, 2.3.3.2
     view, 5.10.6click, 3.1.12, 5.11, 5.12
animation, 5.10.6.1, 5.10.6.2, 5.10.6.3, 5.10.6.4clip, 5.3.9, 5.13.1
     store, 5.10.6.4clipboard, 5.15.3
animations, 6clipping planes, 5
annotate, 3.6.21     tool, 5.13
antialias, 2.3.1.14, 2.3.3.10     tools, 5.13
     lines, 2.3.3.16clone, 2.3.1.2
     lines, 2.3.3.16close, 5.3.3, 5.3.4
arrange, 3.1.13.1collada, 2.4.6, 5.3.6
     window, 3.1.13.1color, 5.3.2, 5.3.3, 5.3.4, 5.3.8.4, 5.4, 5.4.1, 5.8.2, 5.8.3
as2_graph, 3.6.5     background, 5.4.2
assign, 5.1.3     by, 5.4
atom, 3.7.5     surface by proximity, 5.3.3
atomLabelStyle, 3.7.7               selection, 5.3.4
author, 3.2.1.3     background, 2.3.3.17, 5.4.2
     play slide, 6.13     distance, 5.8.10
backbone, 5.1.10     mesh, 5.3.8.3
background, 5.4.2, 5.4.3coloring, 5.4.1
     images activeicm, 6.15combo display style, 3.7.9
     image, 5.4.3compatible, 2.3.1.9
backup, 2.3.2.11compound, 3.2.1.3
ball, 3.7.5compress, 3.7.6
     and stick, 2.4.1connect, 5.3.8.1, 5.12, 5.12.7
basicsel, 3.6.2     object, 5.12.7
binding properties, 5.3.1construct, 2.3.1.1, 5.10.6.1
blast, 3.2.5     molecule, 2.3.1.1
     search, 3.2.5     object, 2.3.1.1
bond, 4.2.3, 4.2.3.1, 4.2.3.2contact surface, 5.3.2

convert, 4.1.2     surface, 5.1.6, 5.3.1
converting pdb, 4.1.2     surfaces, 2.4.6
cpk, 5.1.5     wire, 5.1.1
crash, 2.3.2.11     xstick, 5.1.2
creat, 6.6.1distance, 5.8.10, 5.9
     new objects, 3.3     label, 3.7.7
cross section, 5.13distances, 2.4.3
current.slide, 6.13document, 6.6.4, 6.6.5
custom, 5.12     navigation, 6.6.6
     label, 5.8.8documents, 5.15.3
     rotation, 5.12.2     envelope, 2.4.1
default, 3.1.13     surface, 3.7.5
delete, 2.3.2.1, 3.6.6, 6.6.7dotted line, 5.1.3
     all, 2.3.2.2drag, 3.1.11, 3.7.7, 5.8.3, 6.6.4
     label, 5.8.9     residue label, 2.3.3.15
     all, 2.3.2.2draganddrop, 3.1.11
     angle.label, 5.9.4drop, 3.1.11, 6.6.4
     distance.label, 5.9.4drug bank, 3.2, 3.2.8
     label, 5.8.9dsPocket, 3.1.8
     selection, 2.3.2.1easy rotate, 2.3.3.12
depth, 5.3.11, 5.10.4edit, 4.2.3.1
dialog, 6.6.5     ligand tools, 2.3.2.17
diffuse, 2.4.2     menu, 2.3.2
dihedral, 5.8.5     molecular document, 6.6.1
directories preferences, 3.7.2     selection, 2.3.2.5
directory, 3.7     slide, 6.4.1
display, 3.1.4, 3.1.13.1, 3.7, 4.2.3, 4.2.3.1, 4.2.3.2, 5.14editpdbsearch, 2.3.2.12
     delete distances, 5.9.4electron density map, 2.3.1.6
     dihedral, 5.9.3electrostatic surface, 5.3
     distance2, 5.9.1electrostatics, 5.3.1
          angles, 5.9elegant sketch, 5.10.3
     formal charge, 5.1.9embed browser, 6.11
     hydrogen, 5.1.7     powerpoint03, 6.8
     mesh, 5.3.5     powerpoint07, 6.9
     meshes, 5.3.7     powerpoint10, 6.10
     planar angle, 5.9.2     activeicm, 6.13
     tab, 2.4.1          script, 6.13
     CPK, 5.1.5     browser, 6.7, 6.11
     angle, 5.9.2     firefox, 6.7, 6.11
     dihedral.angle, 5.9.3     internet.explorer, 6.7, 6.11
     distace, 5.8.10     microsoft, 6.7
     distance, 5.9.1     powerpoint, 6.7, 6.8, 6.9, 6.10
     hydrogen, 5.1.7exit, 2.3.1.18
          polar, 5.1.7extra windows, 5.2
     meshes, 5.3.5extract, 3.4.2
          and display.macroshape, 2.4.6     icb, 2.3.1.5
     origin, 5.8.11     object icb, 3.4.2
     representations, 2.4.1     icb, 2.3.1.5
     ribbon, 5.1.3file, 2.3.1.3
     skin, 5.1.4     close, 2.3.1.12

     export, 2.3.1.11               getting started, 2.2.1
     high quality image, 5.15.1               ppt, 2.2.4
     load, 2.3.1.6               web, 2.2.5
     menu, 2.3.1          icm browser convert display pocket, 2.1.4
     password, 2.3.1.10                    distances angles, 2.1.9
     preferences, 2.3.1.15                    get started, 2.1.1
     quick image, 2.3.1.13                    graphical display, 2.1.2
     icb, 3.1.10                         effects, 2.1.5
     recent, 2.3.1.16                    images, 2.1.7
     bak, 2.3.2.11                    labels annotation, 2.1.6
filter selection, 3.6.8                    selections, 2.1.3
fog, 2.3.3.5, 5, 5.10.1                    superimpose, 2.1.8
font, 3.7, 3.7.7, 4.2.3.1, 5.8.2, 5.8.3          search, 3.2
     preferences, 3.7.7          use gui, 3.1
formal charge, 5.1.9html, 2.3.1.11, 3.3, 6.6.1, 6.6.6
front, 5.3.9, 5.13.1hydrogen, 4.2.3, 4.2.3.1, 4.2.3.2, 5.1.8
full scene antialias, 2.3.3.10     bond, 4.2, 5.1.8
     screen, 2.3.3.8          label edit, 4.2.3.1
general preferences, 3.7.5               move, 4.2.3.2
generalselecttools, 3.6.1     bonds, 4.2.4
getting started, 3hyperlink, 6.6.1, 6.6.2
glasses, 5.6iSee, 2.3.1.5, 2.3.1.11, 3.1.10, 5.15.3, 7.2
google, 2.3.1.6icb, 3.4.2, 3.5
     objects, 5.3.6     object, 4.1
     3D, 2.4.6, 5.3.6icmjs, 6.16
graphical display tutorial, 7.1identity, 3.2.1.2
               2D3D labels, 7.1.4image, 3.1.14, 3.7, 3.7.5, 5.15.3, 6.6.3
               annotation, 7.1.2     advanced, 5.15.3
               color representation, 7.1.1     preferences, 3.7.6
               labels, 7.1.3     multiple, 2.3.1.6
graphics, 3.1     quality, 2.3.3.11
     controls, 5     quick, 2.3.1.13, 5.15.2
     effects, 5.10images, 5.15
     panel, 5.2insert, 6.6.4
     preferences, 3.7.3     image, 6.6.3
grob, 3.7.5, 5.3     script, 6.6.4
gui, 3.1.1, 3.7.4interactive, 7.2
     menus, 2.3interrupt, 5.10.6.3
     preferences, 3.7.4     animation, 5.10.6.3
     tabs, 2.4introduction icm browser, 1
h-bond, 4.2.3, 4.2.3.1, 4.2.3.2isee, 6.6.5
hardware stereo, 2.3.3.7javascript, 6.16
hbond, 4.2jpg, 5.15
header, 3.2.1.6keyboard mouse, 5.11
high, 2.3.1.14kmz, 2.4.6, 5.3.6
     quality, 2.3.3.11label, 3.7.7
homology, 3.2.1.2, 3.2.5     atoms, 5.8.2
     to activeicm, 2.2     color, 5.8.7
               create molecular documents, 2.2.3     move, 5.8.4
                    slides, 2.2.2     residues, 5.8.3

     variables, 5.8.5     selection, 3.6
     2D, 2.4.3     molecule, 2.3.1.1
     3D, 2.4.3, 5.8.1     object, 2.3.1.1
     atom, 5.8.1making molecular slides, 6.1
     atoms, 5.8.2     html, 6.6
     color, 5.8.7map, 3.7.7
     custom, 5.8.8materials, 2.4.6
     delete, 5.8.1, 5.8.9maxColorPotential, 3.7.10
     distance, 5.8.10menu, 6.6.5
     drag, 2.3.3.15     windows, 2.3.4
     move, 2.3.3.15, 5.8.4mesh, 4.2.1, 4.2.2, 5.3, 5.3.8.1, 5.3.8.2, 5.3.8.4, 5.3.9, 5.3.10, 5.3.11, 5.13.1
     residue, 5.8.1     clip, 5.3.9
     residues, 5.8.3     color lighting, 5.3.8.4
     site, 5.8.1     options, 5.3.8
     sites, 5.8.6     representation, 5.3.8.3
     variable, 5.8.1     save, 5.3.10
     variables, 5.8.5     options, 5.3.8
labeling, 5.8.1meshes, 5.3.2, 5.10.4
labels, 5.8     surfaces grobs, 5.3
     distances, 5.8.10     tab, 2.4.6
     tab, 2.4.3mmff type, 5.8.2
landscape, 3.7.6mnSolutions, 3.7.10
layer, 5.14molecular animations slides, 6
layers, 5.14     documents, 7.2
ligand, 4.2.2     graphics, 5
     code, 3.2.1.3, 3.2.7molskin, 5.3.2
     editor preferences, 2.3.2.18mouse, 3.1.3, 5.11, 5.12
     pocket, 4.2.4move, 2.3.3.18, 3.1.11, 3.1.13, 4.2.3.2, 5.3.8.1, 5.3.8.2, 5.12, 5.12.7
     receptor display, 4.2     mesh, 5.3.8.2
     surface, 4.2.2     slide, 6.4.2
     pocket, 3.1.8     structure, 5.12
ligand_pocket_interactions, 4.2.4     tools, 5
ligedit tab, 2.4.5     rotate, 5.11
light, 2.4.2     slab, 5.11
     tab, 2.4.2     translate, 5.11
lighting, 5.3.8.4, 5.5     z-rotation, 5.11
line, 3.7.5     zoom, 5.11
lineWidth, 3.7.3multi panel, 5.2
links, 3.6.20     windows, 5.2
list, 3.6.18multiple receptor, 3.2.2
load, 2.3.1.3, 2.3.1.16navigate workspace, 3.6.10
     nmr model, 3.2.1.4new icm session, 2.3.1.2
     protein structure, 4.1.1nmr model, 3.2.1.4
lock, 5.3.9, 5.13.1non-contiguous selection, 3.6.18
logout, 2.3.1.18object, 3.1.11, 3.5
macros, 6.14objects, 4.1.2
macroshape, 5.3occlusion, 5.3.11, 5.10.4
make, 5.10.6.1     shading, 5.3.11
     animation, 5.10.6.1          effect, 5.10.4
     molecular document, 6.6occupancy, 5.1.3

older version, 2.3.1.9     rename, 2.3.1.8
omega, 5.8.5properties, 5.8.2
open, 2.3.1.3, 3.4protect, 6.6.7
     file, 3.4protein structure, 4
     password, 3.4.1     superposition, 4.3
     with password, 2.3.1.4          select, 4.3.1
     password, 2.3.1.4, 3.4.1proximity, 5.3.3, 5.3.4
orange, 3.6.5psi, 5.8.5
     selection, 3.6.5publication quality images, 5.3.2
origin, 5.8.11pubmed, 3.2.1.7
other selection, 3.6.19purple box, 2.3.3.20
package.activeicm, 6.13qs hydrogen bond, 4.2.3
pdb, 2.3.1.6, 3.2, 3.2.1.1, 3.2.7, 3.5quality, 2.3.1.14, 3.7.5
     html, 3.2.1.6quick, 3.1.14
     search, 3.2.1, 3.2.1.2, 3.2.1.3     image, 5.15.2
     recent, 2.3.1.17     start move structure, 3.1.3
     search, 2.4.4, 3.1.2          read pdb, 3.1.2
pdbsearchfield, 2.3.2.13          representation, 3.1.6
pdbsearchhomology, 2.3.2.15          selection, 3.1.5
pdbsearchidentity, 2.3.2.14               level, 3.6.3
pdbsearcsequence, 2.3.2.16          what is selected, 3.6.4
peptide, 3.3     dispalay.distance, 5.9.1
perspective, 2.3.3.9, 5.10.5     start color, 3.1.7
phi, 5.8.5quit, 2.3.1.18
picking, 5rainbow, 3.7.5
picture, 2.3.1.13, 3.1.14, 5.15.2, 6.6.3range, 5.10.6.2
     tips, 3.1.14ratio.selection, 3.7.5
planar, 5.8.5read, 2.3.1.3, 2.3.1.16, 3.4
     angle, 5.9.2     pdb, 3.1.2
plane, 5.3.9, 5.13, 5.13.1, 5.14rear, 5.3.9, 5.13.1
plot, 3.7, 3.7.8recent files, 2.3.1.16
     preferences, 3.7.8     pdb codes, 2.3.1.17
png, 2.3.1.13, 5.15, 5.15.2, 6.6.3receptor, 4.2.1, 4.2.2
pocket, 3.1.8, 4.2, 4.2.1, 4.2.2recover, 2.3.2.11
     surface, 4.2.1redo, 2.3.2.10
     peptide, 3.1.8rename project, 2.3.1.8
     properties, 3.1.8representation, 2.3.3.18
pocketome, 3.2, 3.2.2residue, 3.7.7
portait, 3.7.6     range, 3.6.18
postscript, 3.7.6residues, 4.2.1, 4.2.2
powerpoint, 7.2resize, 5.3.8.1, 5.15.3
ppt, 6.12, 6.14     mesh, 5.3.8.1
preferences, 3.7resolution, 3.2.1.3
presentatio, 6.6.5restore, 2.3.2.11, 5.3.9, 5.13.1
presentation, 6.7, 6.12     recent backup, 2.3.2.11
presentations, 6ribbon, 2.4.1, 3.7.9, 5.1.3
print, 5.7     preferences, 3.7.9
printer.resolution, 3.7.6     style, 3.7.9
project, 2.3.1.5     breaks, 5.1.3
     close, 2.3.1.12     cylinders, 5.1.3

     worm, 5.1.3     atom, 3.1.5, 3.6.3
ribbonColorStyle, 3.7.9     graphical, 3.1.5, 3.6.3
right, 3.1.12     object, 3.1.5, 3.6.3
     click, 3.1.12     purple.box, 2.3.3.20
rock, 2.3.3.14, 5.10.6, 5.10.6.1, 6     residue, 3.1.5, 3.6.3
     speed, 5.10.6.2     workspace, 3.1.5, 3.6.3
rotate, 2.3.3.14, 3.1.3, 5, 5.10.6, 5.10.6.1, 5.12, 5.12.1, 5.12.2, 6selectall, 2.3.2.3
     easy, 2.3.3.12selecting.neighbors, 3.6.16
     speed, 5.10.6.2selection, 3.6.4, 3.6.5, 3.6.21, 5.3.4
rotation, 5.12.1     clear, 2.3.2.7
save, 3.5, 5.3.10, 5.10.6.4     neighbors, 2.3.2.8
     file, 3.5     alignment, 3.6.19
     object, 3.1.9     all, 2.3.2.3
     pdb, 3.5     alter, 3.6.7
     project icb, 3.1.10     atom, 2.3.2.5
     slide, 6.4     basic, 3.6.2
     image, 2.3.1.14, 3.1.14     change, 3.6.7
     object, 3.1.9     clear, 2.3.2.7
     password, 2.3.1.10     filter, 2.3.2.5, 3.6.8
     picture, 2.3.1.14     graphical, 3.6.16
     project, 2.3.1.7, 2.3.1.8, 2.3.1.9, 3.1.10     invert, 2.3.2.6
saving, 2.3.1.7     level, 2.3.3.3
     project, 2.3.1.7     mode, 2.3.3.4
scale, 3.7.5     near atoms, 2.3.2.8
script, 3.3, 6.6.4, 6.6.5     neighbors, 2.3.2.5, 2.3.2.8, 3.6.15, 3.6.17
search chembl, 3.2.3     object, 3.6.11
     drugbank, 3.2.8     other, 3.6.19
     in workspace, 2.3.2.4     properties, 2.3.2.5
     pdb, 3.2.1     residue, 2.3.2.5
          chemical, 3.2.1     sphere, 3.6.15
          ligand code, 3.2.7     spherical, 2.3.2.8
     pocketome, 3.2.2     superposition, 4.3.1
     pubchem, 3.2.9     table, 3.6.19
     surechembl, 3.2.4     tools, 3.6.1, 3.6.2, 3.6.7, 3.6.8
     tab field, 3.2.1.3     whole, 3.6.11
          pdb chemical, 3.2.1.1     workspace, 3.6.9, 3.6.17
               sequence, 3.2.1.2selectioninvert, 2.3.2.6
     uniprot, 3.2.6selections, 3.6
     in.workspace, 2.3.2.4selectneighbors workspace, 3.6.17
secondary.structure, 5.1.3sequence, 3.2, 3.2.1.2, 3.2.5, 3.2.6, 3.3
select, 3.6.12, 3.6.13     pattern, 3.2.1.2
     all, 3.6.14shading, 5.3.11
     amino acid, 3.6.13shell preferences, 3.7.10
     molecule, 3.6.12shift, 5.8.3
     neighbors, 3.6.15shine, 2.4.2, 3.7.5
          graphic, 3.6.16shineStyle, 3.7.3
     object, 3.6.11show, 6.3.1
     residue, 3.6.13, 3.6.18side by side stereo, 2.3.3.6
          by number, 3.6.18size, 4.2.3.1
          number, 3.6.18sketch accents, 5.10.2

skin, 2.4.1, 5.1.4unclip, 5.3.9, 5.13.1
slab, 5.3.9, 5.13.1undisplay, 3.1.4, 5.1.7
slice, 5.13     origin, 5.8.11
slide, 5.10.6.4, 6.2, 6.3.1, 6.6.1undo, 2.3.2.9, 3.7
     effects, 6.5uniprot, 3.2.6
     movie file, 6.2unusual peptide, 3.3
     navigation, 6.3.2     activeicm, 6.12
     show, 6.3uundisplay-all, 2.3.3.1
     blend, 6.5variable, 3.7.7
     edit, 6.4.1view, 2.3.3.18, 6.3.1
     effect, 6.5     animate view, 2.3.3.14
     smooth, 6.5     center, 2.3.3.19
     transition, 6.5     color background, 2.3.3.17
slides, 6, 6.1, 6.3     fog, 2.3.3.5
smooth, 5.3.8.3     menu, 2.3.3
solid, 5.3.8.3     mesh clip, 5.13.1
spec, 2.4.2     perspective, 2.3.3.9
speed, 5.10.6.2     selection level, 2.3.3.3
stereo, 3.7.6, 5.6          mode, 2.3.3.4
     hardware, 2.3.3.7     sketch accents, 2.3.3.13
     side-by-side, 2.3.3.6     slide show, 6.3.1
stick, 3.7.5     tools, 2.3.3
stl, 5.7     undisplay all, 2.3.3.1
stop, 5.10.6.3wavefront, 2.4.6, 5.3.10
store, 2.3.3.18, 5.10.6.4web, 7.2
     current view, 2.3.3.18     browser, 2.3.1.11
structure representation, 5.1window, 3.1.13
style, 3.7.5windows, 3.1.13.1
superimpose, 4.3.2wire, 2.4.1, 3.7.5, 5.1.1
surface, 2.4.1, 3.7.5, 4.2.1, 4.2.2, 5.1.6, 5.3, 5.3.3, 5.3.4wireBondSeparation, 3.7.1
surfaces, 4.2, 5.3.1, 5.3.2, 5.10.4workspace, 3.1.4
system preferences, 3.7.11     panel, 3.1.4
tab pdb, 2.4.4     selection, 3.6.9
table, 3.3     navigation, 3.6.10
tag, 3.6.21write, 3.1.14, 3.5
tags, 3.6.21     image, 2.3.1.14
text, 3.7.7, 6.6, 6.6.1, 6.6.6     images, 5.15
texture, 2.4.6     pdb, 3.5
threshold, 3.7.5     image, 2.3.1.14
tier, 3.1.13     object, 3.1.9
torsion, 5.12.6     picture, 2.3.1.14
     angles, 5.12, 5.12.6     project, 2.3.1.7, 3.1.10
trace, 5.1.10xi, 5.8.5
transitions, 6xstick, 5.1.2
translate, 3.1.3, 5, 5.12zoom, 3.1.3, 5, 5.12, 5.12.4
translation, 5.12.3 
transparent, 5.3.8.3 
     background, 5.15.3 
tutorial molecular documents, 7.2 
tutorials, 7 

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