Sep 13 2018
One or more proteins can be superimposed. Simply select the molecules or parts of the molecules you wish to superimpose and then use the selection of protein superimpose tools described in this section. A convenient superimpose button can be found in the Display tab (see image of button (left).
Before any superposition operation can be undertaken you need to select the protein structures you wish to superimpose.
One way to do this is by selecting in the ICM workspace. For other selection tools please see the Making Selections section of the manual.
Once the molecules are selected you can then superimpose them using the options described in the next section of this manual.
A convenient way to superimpose two molecules is by using the superimpose button in the display tab, ICM will calculate the Ca-atom, backbone atom and heavy atom differences between the two structures. More advanced superimpose options can be found in the Tools/Superimpose menu.
The rmsd will be displayed in the terminal window as shown below:
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