ICM Manual v.3.8
by Ruben Abagyan,Eugene Raush and Max Totrov
Copyright © 2018, Molsoft LLC
Oct 18 2018

Contents
 
Introduction
 Release
 History
 Contact
 Overview
 Conventions
 Abbreviations
 Intro
 Scripting Tutorials
Reference Guide
Command Line User's Guide
References
Glossary
 
Index
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Common abbreviations
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In addition to the abbreviated ICM-shell-objects prefixes (see above), abbreviations may be used for energy terms, and some other frequently used words.
abbr.description
as_ atom selection
alialignment
confconformation
cn distance restraints
grad gradient
ey energy
hb hydrogen bonds
ls list
ms_ molecular selection
MC, mcmontecarlo
MB Mouse Button
mn maximal number of items
n number of items
os_ object selection
re, res residue
rs_ residue selection
rs variable restraint
seqsequence
to torsion
tz tether
ty type
va, varvariable internal coordinate in a molecule (torsions, phase angles, planar angles, bond lengths).
vw van der Waals
wt weight
X_ array of 0D,2D or 3D chemicals

It is convenient to declare these abbreviations as aliases to the corresponding full words in the _startup file for fast typing. For example:
 
 ls seq 
instead of
 
 list sequence 


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