Mar 10 2017 Feedback.
Contents
 
Introduction
Reference Guide
Getting Started
Protein Structure
Molecular Graphics
Slides & ActiveICM
Tutorials
 
Index

ICM-Browser & ActiveICM Guide v.3.8

by Ruben Abagyan, Andrew Orry, Eugene Raush, and Maxim Totrov
Copyright © 2017



Mar 10 2017

Feedback.

Table of contents

Introduction
Reference Guide
2.1 ICM-Browser Reference Guide
2.2 ActiveICM Reference Guide - Create 3D Molecular Documents for the Web and PowerPoint
2.3 Menu Option Guide
2.4 Tab Guide
Getting Started
3.1 The Basics of the Graphical User Interface
3.2 How to search and download Protein Structure, Sequences, and Chemicals
3.3 Create New Objects
3.4 Open and Read Files
3.5 Saving Files
3.6 Making Selections
3.7 Preferences
Protein Structure
4.1 Convert to ICM Object
4.2 Pocket Display
4.3 Protein Superposition
Molecular Graphics
5.1  Molecule Representation
5.2  Multi-Windows
5.3  Meshes - Surface - Grobs
5.4  Coloring
5.5  Lighting
5.6  3D Stereo
5.7  3D Printing
5.8  Labeling and Annotation
5.9  Display Distances and Angles
5.10 Graphics Effects
5.11 Graphics Shortcuts
5.12 Molecule Move Buttons
5.13 Clipping Tools
5.14 Graphic Layers
5.15 High Quality Publication Images
Slides & ActiveICM
6.1  Making Slides
6.2  Make a Movie from a Set of Slides
6.3  How to View and Navigate Slides
6.4  How to Edit Slides
6.5  How to Add Smooth Blending and Transition Effects Between Slides
6.6  How to Make Molecular Documents - Link HTML Text to Slides
6.7  ActiveICM
6.8  How to Embed in Microsoft PowerPoint 2003
6.9  How to Embed in Microsoft PowerPoint 2007
6.10 How to Embed in MicroSoft PowerPoint 2010
6.11 Embed in Web Browser
6.12 How to Use ActiveICM in PowerPoint
6.13 How to Change ActiveICM Component Properties
6.14 Advanced use of activeICM: Macros to direct visualisation changes
6.15 Background Images
6.16 ICM JavaScript (IcmJS)
Tutorials
7.1 Graphics Tutorials
7.2 Creating Fully Interactive Slides for PowerPoint and the Web Tutorial

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