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Contents
 
Help Videos
Reference Guide
 Graphics Reference Guide
 ICM-Browser-Pro Guide
  Download
  Graphics
  Structure Analysis
  Surfaces
  Superimpose Proteins
  Crystallographic Tools
  Sequence Analysis
  Plots
 ActiveICM Guide
 ICM-Chemist Guide
 ICM-Chemist-Pro Guide
 Menu Option Guide
 Tab Guide
Getting Started
Protein Structure
Molecular Graphics
Slides & ActiveICM
Cheminformatics
Learn and Predict
MolScreen
3D Ligand Editor
Tables and Plots
Local Databases
KNIME
Tutorials
 
Index
PrevICM User's Guide
2.2 ICM-Browser-Pro Reference Guide
Next

[ Download | Graphics | Structure Analysis | Surfaces | Superimpose Proteins | Crystallographic Tools | Sequence Analysis | Plots ]

NOTE: ICM-Browser-Pro contains all the features in ICM-Browser. Click here for the ICM-Browser Reference Guide.

2.2.1 Download and Install ICM-Browser-Pro


Getting Started: Download and Install ICM-Browser-Pro
Download ICM-Browser-Pro Distribution.Download
Install ICM-Browser-Pro.Windows Linux Mac

2.2.2 Graphics


Graphics and Movie Making
How to generate the shadow effect. HTML GUI Manual
How to make a screenshot movie. HTML GUI Manual
How to make a movie from a set of slides. HTML GUI Manual
How to move a molecule independently of the other display objects (Connect). HTML GUI Manual

2.2.3 Protein Structure Analysis


Protein Structure Analysis
How to calculate contact areas between molecules. HTML GUI Manual
How to identify closed cavities. HTML GUI Manual
How to calculate surface area. HTML GUI Manual
How to generate interactive Ramachandran plots. HTML GUI Manual

2.2.4 Surfaces


Surfaces
How to generate electrostatic and binding property surfaces. HTML GUI Manual
How to connect and rotate/translate surface (mesh). HTML GUI Manual
How to crop a mesh/surface. HTML GUI Manual
How to save a mesh/surface. HTML GUI Manual

2.2.5 Superimpose Proteins


Superimpose Proteins
How to superimpose proteins based on 3D by visible atoms, C-alpha, backbone or heavy atoms. HTML GUI Manual
How to superimpose multiple proteins based on aligned residues.. HTML GUI Manual

2.2.6 Crystallographic Tools


Crystallographic Tools
How to contour electron density. HTML GUI Manual
How to display crystallographic cell. HTML GUI Manual
How to display crystallographic symmetry. HTML GUI Manual
How to convert x-ray density to a grid. HTML GUI Manual

2.2.7 Sequence Analysis


Sequence Analysis
How to annotate an alignment - box and shade. HTML GUI Manual
How to annotate an alignment with text. HTML GUI Manual
How to display secondary structure in an alignment. HTML GUI Manual
How to extract sequences from pdb files. HTML GUI Manual
How to assign secondary structure. HTML GUI Manual
How to link sequence, alignments, and structures. HTML GUI Manual
How to save as image, print, and delete sequences and alignments. HTML GUI Manual

2.2.8 Plotting Tools


Plotting Tools
Make fully interactive colorful X-Y plots and histograms with up to 4 dimensions. HTML GUI Manual
Save plot and histogram as image. HTML GUI Manual


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