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Protein Structure Analysis Tools

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  • Calculate contact areas.
  • Calculate closed cavities.
  • Calculate surface area.
  • Display distances between atoms.
  • Display planar angle.
  • Display dihedral angle.
  • Interactive Ramachandran plots.
  • Superimpose multiple proteins by a number of different criteria such as backbone, C alpha, heavy atoms.
  • Analysis and structure manipulations: assignment of correct secondary structure from hydrogen bonds, structure superpositions, selections, neighbors.

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