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- Model building using the Learn method.
- Use a model to make a Prediction
- Fingerprint Methods
- 3D QSAR
- Learning Theory
There are four regression algorithms built into ICM:
- Partial Least Squares (plsRegression)
- Principal Component Regression(pcRegression)
- Nearest Neighbor Kernel Regression (nnkernelRegression)
- Random Forest Regression
Two Classification algorithms:
- Bayesian Classifier
- Random Forest (randomForest)
All 2D molecular property predictors are calculated using fragment-based contributions and 3D models use Atomic Property Fields .
For 2D fingerprints we developed an original method for splitting a molecule into a set of linear or non-linear fragments of different length and representation levels and then each chemical pattern found is converted into a descriptor.
In order to perform 'learn and predict' in ICM information must be stored in a table, molecular table or csv file. See the tables chapter for more information on ICM tables. Both chemical compounds and numeric data can be source for building prediction models.
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