Feb 13 2026
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Index
| 2D, 6.8.8, 10.3.24, 10.3.28, 10.14, 10.20.2, 10.20.4 | Blast, 22.2.25 |
| Chemical Label, 6.8.11 | BlastDB Directory, 4.7.2 |
| Interaction Diagram, 16.3.7 | alphas, 6.8.3 |
| bioisostere, 10.9.1 | CHEMRIYA, 13.5 |
| chemical label, 6.8.11 | COLLADA, 3.6.1.7 |
| from PDB, 10.1.1 | CPK, 3.7.1 |
| interaction diagram, 10.6 | ChEMBL, 4.2.3, 10.1 |
| screening, 15 | Chemical Cluster, 21.6.3 |
| to 3D, 10.20, 10.20.3 | Search, 21.6.2 |
| depiction, 10.20.2 | CisTransAmide Angle, 13.1.9.4 |
| 3D, 6.6, 6.8.8, 10.1.3, 10.3.24, 10.3.28, 10.3.31, 10.20.2, 21.2 | Clash Threshold, 4.7.10 |
| QSAR, 10.38.4, 11.4, 21.14 | Computational Chemistry, 16.20 |
| chemical, 10.4.16, 10.20.1 | Computer-Aided Drug Discovery (CADD), 16.20 |
| interactive ligand editor, 3.7.5 | Covalent Geometry., 16.20 |
| ligand editor, 16.3.4 | DNA, 4.3, 8, 8.3.3 |
| object, 6.3.9 | Decomposition, 10.36.3 |
| pharmacophore, 13.3, 16.3.11 | Design Evolution, 12.10 |
| print, 6.7 | Display, 22.2.26 |
| printing, 6.7 | Distance, 13.1.9.4 |
| screening, 15 | Dock Directory, 4.7.2 |
| stereo, 6.6 | Docking, 22.2.26 |
| 3DMOLT, 18.5 | Drug Bank, 4.2.8 |
| 3DQsar, 11.4 | Design, 16.20 |
| 3D_Similarity_PDB_Search, 5.7 | Editor, 4.7.2 |
| 3Dqsar tutorial, 21.14 | Eintl, 12.1.10 |
| bioisostere, 10.9.2 | Error in saving configuration settings: You are not a license administrator, 22.1.10 |
| predict, 5.6 | Extended Amino Acids, 16.20 |
| helices strands, 5.6.1 | FILTER.Z, 4.7.2 |
| local flexibility, 5.6.4 | gz, 4.7.2 |
| protein health, 5.6.3 | uue, 4.7.2 |
| tools identify ligand binding pocket, 5.6.6 | FTP.createFile, 4.7.11 |
| oda, 5.6.5 | keep File, 4.7.11 |
| 4D, 12.6.2, 21.12.1 | proxy, 4.7.11 |
| dock, 16.15 | Filter.zip, 4.7.2 |
| docking, 4.2.2 | Flexible Minimization, 16.20 |
| 64, 22.1.3 | Force Auto Bond Typing, 4.7.11 |
| AI, 12.10 | Formula, 22.8.7, 22.8.10 |
| APF, 10.37.4, 10.37.7, 10.38.4, 11.4, 15, 15.6, 21.14 | Free Wilson, 10.36.2 |
| template, 10.37.3 | Frequently Asked Questions, 22 |
| Acetyl Cap, 16.20 | GAMESS, 9.21.16 |
| ActiveICM, 3.6.1.12 | GIF, 3.6.1.15, 6.16, 6.16.2 |
| Alpha-Helix Stabilization, 16.20 | GINGER, 10.23 |
| Area, 9.21.18, 22.2.26 | GPCR Modeling Example, 21.5.1 |
| Atom Single Style, 4.7.3 | GRAPHIC.store Display, 4.7.3 |
| Atomic Property Fields, 11.4, 21.14 | NtoC Rainbow, 4.7.4 |
| Bad Groups, 22.8.7, 22.8.10 | alignment Rainbow, 4.7.4 |
| Baell, 10.4.9 | atomLabelShift, 4.7.7 |
| Beep, 4.7.11 | ballStickRatio, 4.7.1 |
| Beta-Catenin, 16.20 | center Follows Clipping, 4.7.3 |
| Bioactive Conformation, 16.20 | clash Style, 4.7.3 |
| clip Grobs, 4.7.3 | wire Width, 4.7.1 |
| Skin, 4.7.3 | wormRadius, 4.7.9 |
| Static, 4.7.3 | xstick Backbone Ratio, 4.7.1 |
| discrete Rainbow, 4.7.4 | Hydrogen Ratio, 4.7.1 |
| displayLineLabels, 4.7.7 | Style, 4.7.1 |
| displayMapBox, 4.7.3 | Vw Ratio, 4.7.1 |
| distance Label Drag, 4.7.1 | GROB.arrowRadius, 4.7.3 |
| dnaBallRadius, 4.7.9 | atomSphereRadius, 4.7.3 |
| dnaRibbonRatio, 4.7.9 | contourSigmaIncrement, 4.7.3 |
| dnaRibbonWidth, 4.7.9 | relArrow Size, 4.7.3 |
| dnaRibbonWorm, 4.7.9 | relArrowHead, 4.7.3 |
| dnaStickRadius, 4.7.9 | GUI.auto Save, 4.7.4 |
| dnaWormRadius, 4.7.9 | Interval, 4.7.4 |
| font Scale, 4.7.7 | autoSave, 22.2.33 |
| fontColor, 4.7.7 | autoSaveInterval, 22.2.33 |
| fontLineSpacing, 4.7.7 | enumeration Memory Limit, 4.7.11 |
| grobLineWidth, 4.7.3 | max Nof Recent Files, 4.7.11 |
| hbond Ball Period, 4.7.1 | Sequence Length, 4.7.4 |
| Style, 4.7.1 | splash Screen Delay, 4.7.11 |
| hbondAngleSharpness, 4.7.1 | Image, 4.7.11 |
| hbondMinStrength, 4.7.1 | table Row Mark Colors, 4.7.4 |
| hbondStyle, 4.7.1 | workspace Folder Style, 4.7.4 |
| hbondWidth, 4.7.1 | workspaceTabStyle, 4.7.4 |
| hetatmZoom, 4.7.1 | GigaScreen, 18.5 |
| hydrogenDisplay, 4.7.1 | HBA, 13.1.10, 22.8.7, 22.8.10 |
| light, 4.7.3 | HBD, 13.1.10, 22.8.7, 22.8.10 |
| lightPosition, 4.7.3 | HTTP.proxy, 4.7.11 |
| mapLineWidth, 4.7.3 | support Cookies, 4.7.11 |
| occupancy Radius Ratio, 4.7.3 | user Agent, 4.7.11 |
| occupancyDisplay, 4.7.3 | Hbond to selection, 13.1.9.4 |
| quality, 4.7.3 | Hbonds, 16.3.4 |
| rainbow Bar Style, 4.7.4 | Helicon Peptide, 16.20 |
| resLabelDrag, 4.7.7 | How To Guide, 3 |
| resize Keep Scale, 4.7.3 | Html, 4.2.1.6 |
| ribbonRatio, 4.7.9 | Http Read Style, 4.7.11 |
| ribbonWidth, 4.7.9 | Hydrocarbon Staples, 16.20 |
| ribbonWorm, 4.7.9 | Hydrogen.bond, 4.7.5 |
| rocking, 4.7.4 | I+4 Staple Position, 16.20 |
| Range, 4.7.4 | Staple Position, 16.20 |
| Speed, 4.7.4 | ICM Browser How To, 3.1 |
| selectionStyle, 4.7.3 | Pro How To, 3.2 |
| site Label Drag, 4.7.7 | graphics crash, 22.1.11 |
| Shift, 4.7.7 | start, 1 |
| siteArrow, 4.7.7 | ICM-Pro Tutorial, 16.20 |
| stereoMode, 4.7.3 | IMAGE.bondLength2D, 4.7.6 |
| stickRadius, 4.7.1 | color, 4.7.6 |
| surfaceDotDensity, 4.7.3 | compress, 4.7.6 |
| surfaceDotSize, 4.7.3 | gammaCorrection, 4.7.6 |
| surfaceProbeRadius, 4.7.3 | generateAlpha, 4.7.6 |
| transparency, 4.7.3 | lineWidth, 4.7.6 |
| orientation, 4.7.6 | MolVol, 10.11 |
| paper Size, 4.7.6 | Molcart, 10.5.3 |
| previewResolution, 4.7.6 | MoldHf, 10.11, 22.8.7, 22.8.10 |
| previewer, 4.7.6 | Molecular Docking, 16.20 |
| print, 4.7.6 | Preparation, 16.20 |
| printerDPI, 4.7.6 | Movie.fade Nof Frames, 4.7.4 |
| scale, 4.7.6 | quality, 4.7.4 |
| stereoAngle, 4.7.6 | Auto, 4.7.4 |
| stereoBase, 4.7.6 | NCBI, 22.2.25 |
| stereoText, 4.7.6 | NH2 Cap, 16.20 |
| INCHI, 10.20.3 | NVIDIA, 22.1 |
| IQR, 17.4.6 | Natural Amino Acids, 16.20 |
| ISIS, 22.8.3 | Nof_Atoms, 10.11 |
| Icm Prompt, 4.7.10 | Nof_Chirals, 10.11 |
| InChi, 10.3.20, 10.4.12, 10.20.3 | Nof_HBA, 10.11 |
| key, 10.3.20 | Nof_HBD, 10.11 |
| Interaction Diagram 2D, 16.3.7 | Nof_Rings, 10.11 |
| Interactive Ligand Editor, 16.20 | Nof_RotBonds, 10.11 |
| Internal Coordinates Table, 9.21.13 | Non-overlap, 13.1.9.4 |
| Directory, 4.7.2 | Nvidia GL failutre, 22.1.11 |
| JPEG, 3.6.1.15 | ODA, 22.2.26 |
| KMZ, 3.6.1.7 | Optimal, 22.2.26 |
| LCC, 13.5 | Output Directory, 4.7.2 |
| LigStrain, 16.20 | PAINS, 10.4.9, 10.11.3 |
| Ligand Strain, 16.20 | chemicals, 10.4.9 |
| Log Directory, 4.7.2 | PCA, 11.1, 11.5, 21.6.4 |
| LogP, 11, 17.6 | analysis, 10.29 |
| LogS, 11, 17.6 | PDB, 4.2.1.6, 5.1.2, 5.3.3, 5.7, 8.1, 10.1.1, 16.19 |
| MD, 14, 14.1, 14.2, 14.3, 14.4 | 7UWI, 16.20 |
| MOL, 10, 10.3.3, 10.3.24, 10.3.25, 10.3.26, 10.3.27, 13.1.3, 17.2 | Directory, 4.7.2 |
| MOL2, 13.1.3 | Style, 4.7.2 |
| MOLT, 18.1 | link, 17.1.40 |
| MOVIE.frame Grab Mode, 4.7.4 | Search, 3.6.2.12, 3.6.2.13, 3.6.2.14, 3.6.2.15, 3.6.2.16 |
| MPO, 10.34 | Field, 3.6.2.13 |
| Mac, 22.1.15 | Homology, 3.6.2.15 |
| Atom Margin, 4.7.10 | Identity, 3.6.2.14 |
| Sigma Level, 4.7.10 | Sequence, 3.6.2.16 |
| Markush, 21.6.9 | convert, 5.1.2 |
| create, 21.6.7 | PFAM, 3.6.1.7 |
| File Size Mb, 4.7.11 | PLOT.Yratio, 4.7.8 |
| Max_Fused_Rings, 10.11 | color, 4.7.8 |
| Mnconf, 4.7.10 | date, 4.7.8 |
| Model, 11.4 | draw Tics, 4.7.8 |
| MolCart, 22.9 | font, 4.7.8 |
| MolIPSA, 22.8.7, 22.8.10 | fontSize, 4.7.8 |
| MolLogP, 22.8.7, 22.8.10 | labelFont, 4.7.8 |
| MolLogS, 22.8.7, 22.8.10 | lineWidth, 4.7.8 |
| MolPSA, 10.11 | logo, 4.7.8 |
| MolScreen, 15 | markSize, 4.7.8 |
| MolSoft ICM-Pro, 16.20 | orientation, 4.7.8 |
| previewer, 4.7.8 | SEQUENCE.site Colors, 4.7.4 |
| rainbowStyle, 4.7.8 | SITE.label Style, 4.7.7 |
| seriesLabels, 4.7.8 | labelOffset, 4.7.7 |
| PLS, 11.1 | wrap Comment, 4.7.7 |
| PNG, 3.6.1.15, 4.1.14, 6.16, 6.16.2 | SLIDE.ignore Background Color, 4.7.4 |
| PROTAC, 12.14 | Fog, 4.7.4 |
| PSA, 10.11.7 | SMILES, 10.1.2, 10.2.4, 10.4.12 |
| Peptide Engineering, 16.20 | Score, 12.1.9, 12.4.3.1 |
| Mode, 16.20 | Select Min Grad, 4.7.10 |
| Modeling, 16.20 | Sequence Editing, 16.20 |
| Stapling, 16.20 | Show Res Code In Selection, 4.7.7 |
| Pharmacophore RMSD, 13.1.9.4 | Sidechain Optimization, 16.20 |
| PowerPoint, 21.2, 22.3 | Smiles, 22.8.7, 22.8.10, 22.8.11 |
| Projects Directory, 4.7.2 | Special Cases, 10.34.1.1 |
| Prosite Dat, 4.7.2 | Strain, 12.4.3.1 |
| Protein, 22.2.26 | SureChEMBL, 4.2.4 |
| Protein-Peptide Interactions, 16.20 | Swissprot, 3.6.1.7 |
| Viewer, 4.7.2 | Dat, 4.7.2 |
| Pub Chem, 4.2.9 | link, 17.1.40 |
| PubMed, 4.2.1.7 | Temp Directory, 4.7.2 |
| Reference, 17.1.40 | Terminal Capping, 16.20 |
| Pubchem, 4.2.9 | Torsion Minimization, 16.20 |
| QSAR, 11, 11.1, 17.6, 21.14 | USER.email, 4.7.11 |
| R, 10.8, 10.36.1 | friends, 4.7.11 |
| and S, 22.5.21 | full Name, 4.7.11 |
| R-Group, 10.36.3 | organization, 4.7.11 |
| R-groups, 16.5.3 | phone, 4.7.11 |
| REAL, 10.5.5, 13.5 | Ultra Large Libraries, 18.5 |
| RIDE, 18.5 | Uniprot, 17.1.40 |
| RIDGE, 18.5 | VHL, 12.14 |
| - Rapid Docking GPU Engine, 13.5 | VLS, 13.1, 13.1.1, 13.1.2, 13.1.9.2 |
| RMSD, 5.4.2, 9.21.18 | preferences, 13.1.4 |
| RMSF, 9.21.18 | Van Drie, 10.36.5 |
| RNA, 4.3 | Label Style, 4.7.7 |
| RTCNN, 12.1.9, 12.4.3.1 | Volume, 22.8.7, 22.8.10 |
| Score, 16.20 | Change, 13.1.9.4 |
| Ramachandran Plot, 5.5.9 | Water Radius, 4.7.10 |
| Real Format, 4.7.10 | Wilson, 10.36.2 |
| Reinforce Helix Tool, 16.20 | Wire Style, 4.7.1 |
| Relax Geometry Command, 16.20 | XPDB Directory, 4.7.2 |
| Label Shift, 4.7.7 | Xstick, 3.7.1 |
| Style, 4.7.7 | a-bright, 3.7.2 |
| Residue Replacement, 16.20 | about model, 11.1.3 |
| RotB, 22.8.7, 22.8.10 | acceptor, 10.4.9, 10.38.1 |
| SALI, 10.36.5, 21.6.11 | active, 7.7, 22.3.3 |
| SAR, 11, 15.6, 17.4.25, 17.6 | activeICM, 7.8 |
| table, 10.36.3, 21.6.9 | activeicm, 7.7, 7.12, 7.14, 7.14.1, 22.3 |
| SCARE, 12.6.4 | advanced, 7.14 |
| SCORE, 22.5.6, 22.5.17 | background images, 7.15 |
| SDF, 10, 10.3.24, 10.3.25, 10.3.26, 10.3.27, 13.1.3, 17.2 | control, 7.13 |
| activity, 11, 17.6 | extract, 8.3.10 |
| cliff, 10.36.5, 10.36.6, 21.6.11 | gaps, 8.7.11 |
| tutorial, 21.6.11 | horizontal scroll, 8.7.10 |
| add database, 10.10.3 | image, 8.7.2 |
| new data, 10.3.7 | multiple, 8.3.7, 8.6.5 |
| to table, 16.5.7 | options, 8.7.10 |
| adding fragment, 10.4.8 | rename, 8.7.10 |
| in editor, 10.4.8 | reorder, 8.3.12 |
| adjust row height, 22.2.39 | ruler, 8.7.10 |
| administration, 10.10.5 | save, 8.7.2 |
| advanced alignment selection, 8.7.14 | search, 8.7.12 |
| ai, 16.18 | selection, 8.7.13, 8.7.14 |
| decoration, 16.18 | sequence offset, 8.7.10 |
| alanine, 12.6.4 | table, 8.7.10 |
| album, 6.15.3 | view, 8.7.10 |
| alias, 10.4.5 | alignments, 8.6, 21.4 |
| align, 4.1.11, 10.14 | allosteric, 5.6.6 |
| color 2D scaffold, 10.14 | alpha, 3.7.2 |
| dna protein, 8.6.4 | channel, 4.7.6 |
| multiple, 8.6.5 | ambient, 3.7.2 |
| sequence structure, 8.6.3 | amidinium, 10.15 |
| two sequences, 8.6.2 | amino acid, 4.3 |
| DNA to protein, 8.6.4 | acids, 10.4.6 |
| sequence, 8.6, 8.6.6 | anaglyph, 6.6, 22.1, 22.1.8 |
| two sequences, 8.3.5, 8.6.2 | stereo faq, 22.1.8 |
| alignment, 8.3.8, 8.6.1, 8.7.7, 8.7.7.1, 8.7.16, 8.8, 10.37.5, 10.37.6, 21.4.4, 22.4.12, 22.6, 22.6.2 | analysis, 3.6.4, 8.3 |
| annotation tutorial, 21.4.4 | angle, 5.5.7, 5.5.8, 6.8.5, 6.9, 6.12.6, 10.16, 22.2.18, 22.4.16 |
| box shade font, 8.7.7 | angstrom, 22.4.7 |
| editing, 8.7.1 | animate, 3.6.3.15, 6.10.7 |
| editor, 8.7 | view, 6.10.7 |
| example, 8.3.14 | animation, 6.10.7.1, 6.10.7.2, 6.10.7.3, 6.10.7.4 |
| font size, 22.2.1 | store, 6.10.7.4 |
| format, 8.7.11 | animations, 7 |
| gaps, 8.7.11 | annotate, 4.6.21, 10.13 |
| image, 8.7.2 | alignment, 8.7.6 |
| profile, 21.4.4 | by substructure, 10.13 |
| reorder, 8.3.12 | plot, 17.4.24 |
| search, 8.7.12 | annotation, 8.7.6 |
| secondary, 21.4.4 | antialias, 3.6.1.15, 3.6.3.10 |
| structure, 8.7.16, 22.6.2 | lines, 3.6.3.17 |
| selection, 8.7.13 | lines, 3.6.3.17 |
| strength, 8.3.8 | apf, 5.4.6, 5.8, 10.37.5, 10.37.6, 10.38, 11, 12.7, 13, 13.1.9.5, 13.3, 13.4, 16.3.11, 16.17, 21.8, 21.8.1, 21.8.2, 21.8.3, 21.8.4, 21.8.5, 22.8.12 |
| profile, 8.3.8 | flexible template, 10.37.6 |
| view options, 8.7.10 | pairwise, 10.37.5 |
| color, 8.7.9 | super, 10.37.3 |
| comment, 8.7.6 | template, 16.12.3 |
| consensus, 8.7.9, 8.7.14 | tools, 10.38 |
| cut, 8.3.11 | 3DQSAR, 10.38.4 |
| display title, 8.7.10 | consensus ph4, 10.38.1 |
| editor, 8.7 | pairwise score, 10.38.2 |
| tutorial, 21.8 | backbone, 6.1.10, 22.2.13 |
| cluster, 21.8.5 | background, 6.4.2, 6.4.3 |
| consensus, 21.8.2 | color shortcut, 22.2.2 |
| score, 21.8.3 | images activeicm, 7.15 |
| screen, 21.8.4 | image, 6.4.3 |
| superposition, 21.8.1 | backup, 3.6.2.11 |
| alignment, 10.37.7 | bad, 10.11 |
| apf3Dqsa, 22.8.12 | groups, 10.4.9 |
| apo, 13.1.10 | ball, 4.7.5 |
| append, 17.1.44 | and stick, 3.7.1 |
| table, 17.1.44 | balloon, 17.4.26 |
| rows, 3.6.10.7 | bases, 10.4.6 |
| applying prediction models, 11.2 | basicsel, 4.6.2 |
| area, 5.5.3, 5.6.5, 12.13, 12.13.2, 12.13.3, 21.3.5 | batch, 12.3.2, 12.13.9 |
| aromatic, 10.3.28, 10.38.1 | file, 12.3.2.2 |
| arrange, 4.1.13.1 | index, 12.3.2.4 |
| window, 4.1.13.1 | loaded icm object, 12.3.2.1 |
| graph, 22.2.8 | mol mol2, 12.3.2.3 |
| as2_graph, 4.6.5 | molcart, 12.3.2.5 |
| as_graph, 22.2.8 | run, 12.3.3 |
| asparagine, 9.21.2 | bayesian classifier, 11 |
| assign, 6.1.3 | bbb, 10.11.4 |
| 2D coordinates, 10.20.2 | beep, 22.2.35 |
| helices, 5.6.1 | begin docking simulation, 12.3 |
| strands, 5.6.1 | best, 10.3.34 |
| atom, 4.7.5, 10.3.28, 22.2.4, 22.2.5, 22.2.8, 22.2.16, 22.2.17, 22.4.10 | bicyclics, 10.4.6 |
| charge, 22.4.21 | binding, 21.5.3, 22.2.14, 22.5.2, 22.5.10 |
| atomLabelStyle, 4.7.7 | properties, 6.3.1 |
| atomic energy circles, 16.3.5 | bioinfo align multiple, 8.3.7 |
| property field, 10.37.5, 10.37.6, 16.3.11 | two sequences, 8.3.5 |
| score, 10.38.2 | links, 8.3.9 |
| fields, 5.4.6, 5.8, 10.38, 10.38.1, 10.38.3, 13, 21.8 | menu, 3.6.4 |
| attachment, 10.4.3, 10.5.1 | secondary structure, 8.3.2 |
| point, 10.35.4 | translation, 8.3.3 |
| author, 4.2.1.3 | bioisoester, 10.9 |
| close tree, 10.28.5 | bioisostere, 10.9, 10.9.1, 10.9.2, 16.8 |
| play slide, 7.13 | biological, 5.3.3 |
| autofit, 12.11 | biomolecule, 3.6.5, 5.3.3, 21.3.8, 21.3.12 |
| autosave, 22.2.33 | bit, 22.1.3 |
| available properties, 10.11.1 | blast, 4.2.5, 8.4 |
| ave, 17.7.1 | search, 4.2.5 |
| avi, 6.16, 6.16.2 | blood brain barrier, 10.11.4 |
| axes, 17.4.15 | blue lines, 8.2 |
| axis, 17.4.11 | boat, 22.5.20 |
| options, 17.4.10 | bond, 5.1.3, 5.2.3, 5.2.3.1, 5.2.3.2, 9.10, 10.4.10, 22.4.1, 22.8.7, 22.8.10 |
| grid, 17.4.10 | covalent, 22.4.2 |
| range, 17.4.10 | type, 5.1.3.1, 5.1.3.2, 10.7.1, 10.7.2, 10.7.3 |
| title, 17.4.10 | bonding, 6.1.8 |
| b-factor, 5.6.4, 21.3.10 | preferences, 4.7.1 |
| coloring scale, 22.2.38 | box, 4.7.7, 6.8.16, 8.7.7, 8.7.7.1, 22.5.9 |
| size, 16.9.1 | image, 10.2.6 |
| browse, 10.3.31, 12.4.1, 19.4 | table, 10.2.2 |
| mode, 10.3.31 | super, 10.37 |
| molt, 18.2 | view, 10.3.28 |
| stack, 9.21.15 | chembl, 4.2.3, 4.2.4 |
| build, 6.10.7.1 | chemical, 10, 10.3.28, 10.3.30, 10.3.31, 10.3.34, 10.3.35, 10.4.10, 10.8, 10.10.4, 10.11.3, 10.20.2, 10.24, 10.35.4, 10.35.5, 10.37, 10.37.5, 10.37.6, 17.7.1, 21.6.4, 22.8.4, 22.8.5, 22.8.7, 22.8.8, 22.8.9, 22.8.10 |
| 2D qsar, 11.1.2 | clustering, 10.28, 10.28.6 |
| homology model, 9.1.2 | descriptors, 22.8.15 |
| hydrogens, 9.21.5 | dictionary, 10.4.4, 10.4.5, 10.4.6 |
| buried molSurface, 13.1.9.4 | draw, 21.6.1 |
| buttons, 7.14 | spreadsheet tutorial, 21.6.1 |
| bye, 3.6.1.19 | edit buttons, 10.4.11 |
| alpha, 6.1.10 | editor, 10.4, 10.4.8 |
| trace, 6.1.10 | not starting, 22.1.13 |
| ca-trace, 6.1.10 | fingerprint, 15 |
| cache, 7.14.1 | fingerprints, 22.8.15 |
| calculate, 10.11, 22.5.2 | fragments, 10.3.33 |
| properties, 10.11 | group, 10.4.5 |
| sequence similarity, 8.7.15 | groups, 10.4.5, 10.4.8 |
| startup, 22.10.2 | modifiers, 10.35.2 |
| carbon, 22.2.4, 22.2.5 | properties, 21.6.4 |
| carboxylic acid, 10.15 | right click, 10.4.3 |
| cartesian, 10.23 | search, 10.5, 13.4 |
| cation, 5.2.5 | filter, 10.5.2 |
| cavities, 5.5 | text, 10.5.4 |
| closed, 5.5.4 | sketch, 21.6.1 |
| ccp4, 22.2.27, 22.2.28 | space, 10.30 |
| cell, 5.3.2 | spreadsheet, 4.2.3, 10.1.3, 10.3.1, 10.4.14, 21.6.1, 22.8.13 |
| center, 3.6.3.20, 4.1.3, 6.12, 6.12.5, 16.3.13, 17.1.40, 22.4.22 | compare, 10.3.22 |
| on ligand, 16.3.13 | template, 10.3.2 |
| and representative members, 17.7.2 | spreadsheets, 10.3 |
| cereblon, 12.14 | substituent, 10.9 |
| chain.breaks, 22.2.34 | substructure, 4.2.1.1 |
| chair, 22.5.20 | table, 16.10, 22.8.11 |
| change box size, 16.9.1 | display, 10.3.3 |
| height of all rows, 17.1.7 | tables, 17.2 |
| ligand, 16.5.1 | toxicity, 10.11.3 |
| residue number, 9.2 | 2D, 10.7 |
| row height, 17.1.7 | 3D, 10.7 |
| selection, 4.6.7 | append, 10.4.13 |
| speed range, 6.10.7.2 | clustering, 10.28, 10.28.1 |
| changing font in alignment editor, 8.7 | convert, 5.1.3, 5.1.3.1, 5.1.3.2, 9.21.1, 10.7, 10.7.1, 10.7.2, 10.7.3, 22.4.1 |
| charge, 3.6.3.21, 5.1.3, 5.1.3.1, 5.1.3.2, 6.8.2, 10.4.3, 10.5.1, 10.7.1, 10.7.2, 10.7.3, 10.38.1, 13.1.9.4, 22.4.1 | display.fit, 22.8.13 |
| groups, 12.2.1.3, 22.5.22 | draw, 10.4.1 |
| check box, 7.6.6 | duplicates, 10.3.21 |
| convert, 22.8.5 | editor, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6 |
| export excel, 10.2.3 | load, 10.1 |
| save, 10.2 | merge, 10.32 |
| 3D, 10.2.5 | new, 10.4.1 |
| editor, 10.2.4 | properties, 10.3.19 |
| read, 10.1 | downstream cluster, 10.28.5 |
| save, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6, 10.4.13 | project, 16.22 |
| search, 10.4.3, 10.5, 10.5.1, 10.5.3 | cavities, 5.6.6 |
| similarity, 10.4.3, 10.5, 10.5.1, 10.5.3 | cloud, 13.1.7, 13.1.7.2 |
| spreadsheet, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6, 10.3 | cluster, 9.21.18, 13.1.7, 13.1.9.5, 17.7.1 |
| structure, 10.4.13 | stack, 9.21.18 |
| superposition, 10.37.3, 10.37.7 | representative.center, 10.28.2 |
| table, 10.3, 17.2 | clustering, 17.7, 21.6.3 |
| cheminformatics, 10, 10.3, 22.8 | cns, 10.34 |
| tutorials, 21.6 | collada, 3.7.6, 6.3.7 |
| chemistry, 10.24, 22.8 | color, 5.6.3, 6.3.2, 6.3.3, 6.3.4, 6.3.9.4, 6.4, 6.4.1, 6.8.2, 6.8.3, 8.8, 10.3.35, 10.14, 17.1.45, 17.7.4, 22.2.4, 22.2.5, 22.2.16, 22.2.20 |
| convert, 10.20 | alignment, 8.7.9 |
| 2dto3d, 10.20.1 | background, 6.4.2 |
| pca, 10.29 | by, 6.4 |
| smiles, 10.20.3 | alignment, 8.8 |
| duplicates, 10.33 | chemical, 10.3.35 |
| remove.redundant, 10.33 | faq, 22.2.20 |
| chemlib.so, 22.1.3 | key, 22.2.38 |
| chemspace, 10.5.5 | scale, 22.2.38 |
| append, 21.6.4.4 | surface by proximity, 6.3.3 |
| build visualize, 21.6.4.1 | selection, 6.3.4 |
| compare, 21.6.4.8 | table, 10.3.27 |
| delete row, 21.6.4.3 | 2D sketch, 10.5.6.5 |
| distinguish, 21.6.4.7 | background, 3.6.3.18, 6.4.2 |
| export, 21.6.4.5 | distance, 6.8.10 |
| project, 21.6.4.6 | mesh, 6.3.9.3 |
| select, 21.6.4.2 | table, 10.3.27 |
| chi, 6.8.5, 22.2.18 | coloring, 6.4.1 |
| chimeric ligands, 12.9 | column, 17, 17.1.6, 17.1.22, 17.1.25, 17.1.39, 17.1.40, 17.4, 17.4.1, 22.8.7 |
| chiral, 10.25, 12.1.3 | annotation, 17.1.41 |
| chirality, 10.25, 12.1.3 | order, 17.1.29 |
| considerations, 12.1.3 | plot, 17.4.6 |
| chrome, 22.3 | row width, 17.1.22 |
| cis trans proline, 21.5.2 | statistics, 17.1.32 |
| clash, 4.7.5, 6.8.15 | visibility order, 17.1.28 |
| volumes, 13.1.11 | color, 17.1.10 |
| classes, 10.3.28 | hide, 10.3.8 |
| classification model, 15.5 | show, 10.3.8 |
| clear display and planes, 3.6.3.2 | combinatorial chemistry, 10.35 |
| selection, 4.6.6 | library, 21.6.8 |
| planes, 3.6.3.2 | combine, 3.6.10.5 |
| click, 4.1.12, 6.11, 6.12 | display style, 4.7.9 |
| clip, 6.3.10, 6.13.1, 22.2.11 | command, 22.5.16 |
| clipboard, 6.15.3, 17.7.3 | line, 22.2.32 |
| clipping, 22.2.19 | commands, 22.10.1 |
| planes, 6 | common substructure, 10.37.1 |
| tool, 6.13 | compact tree, 10.28.5 |
| tools, 6.13 | compare, 10.3.29, 10.31, 10.32 |
| clone, 3.6.1.2 | table, 10.3.22 |
| close, 6.3.3, 6.3.4, 16.22 | tables, 10.31 |
| complex, 10.6, 13.1.9.3 | tutorial, 21.9.3 |
| compound, 4.2.1.3, 10.24, 17.2 | cpk, 6.1.5, 22.2.21 |
| compounds, 22.9.3 | crash, 3.6.2.11 |
| compress, 4.7.6 | creat, 7.6.1 |
| compressed, 17.1.6 | create, 17.1.1 |
| table view, 17.1.6 | markush, 10.35.3 |
| conditions, 10.5.2 | new objects, 4.3 |
| gen, 10.23 | cross, 22.2.10 |
| configuration error, 22.1.19 | section, 6.13 |
| conformation, 9.21.18, 10.23, 12.6.2 | cryptic, 5.6.6 |
| conformational entropy, 10.27 | crystal, 5.3.2 |
| conformations, 22.9.8 | crystallographic analysis, 5.3 |
| conformers, 10.23 | biomolecule, 5.3.3 |
| connect, 6.3.9.1, 6.12, 6.12.7 | contour map, 5.3.6 |
| object, 6.12.7 | convert2grid, 5.3.7 |
| connectivity, 10.4.3, 10.5.1 | crystallographic cell, 5.3.2 |
| consensus, 10.38, 21.8.2 | load eds, 5.3.4 |
| pharmacophore, 10.38.1 | maps cell, 5.3.5 |
| construct, 3.6.1.1, 6.10.7.1 | symmetry packing, 5.3.1 |
| molecule, 3.6.1.1 | tools, 21.3.8 |
| object, 3.6.1.1 | cell, 3.6.5 |
| contact, 5.5, 5.5.3, 21.3.5 | neigbor, 5.3.1 |
| surface, 6.3.2 | neighbors, 3.6.5 |
| contacts, 6.3.3, 6.3.4, 10.6, 13.1.9.6, 16.3.12 | crystallography, 5.3.4, 5.3.6, 5.3.7, 22.2.27, 22.2.28 |
| contour, 5.3.6, 5.3.7 | csv, 10.2.3, 17.1.2, 17.1.3, 17.1.21, 19.2 |
| convert, 5.1.2, 10.20.1, 10.20.5, 22.8.5 | current, 22.2.22 |
| chemical, 10.3.24 | slide, 7.13 |
| 2D 3D, 10.7 | curves, 17.4.5 |
| 3D molecular editor, 10.4.16 | custom, 6.12, 10.3.3, 10.37 |
| from pdb, 5.1.3 | actions, 17.1.40 |
| local database, 3.6.1.6 | fragments, 10.13 |
| pdb, 21.3.2 | label, 6.8.8 |
| chem, 10.7.1 | rotation, 6.12.2 |
| smiles to 2D, 22.8.11 | customized MPO score, 10.34.1 |
| local.database, 3.6.1.6 | cut, 17.1.35 |
| smiles, 10.20, 10.20.3, 10.20.4 | vertical alignment block, 8.3.11 |
| converting pdb, 5.1.2 | cyclic peptide, 9.20 |
| coordinates, 10.1.3 | cys, 5.6.2 |
| copy, 10.3.25, 10.4.11, 10.4.18, 10.5.6.2, 17.1.35 | cysteine reactivity, 5.6.2 |
| cell, 17.1.36 | damaged skin, 22.1.12 |
| chemical, 10.3.25 | dash, 22.2.12 |
| loop, 9.5 | database, 8.4, 10.10, 10.35.4, 13.1.3, 13.1.6, 18.1, 19 |
| paste row, 17.1.35 | file format, 13.1.3 |
| row, 17.1.36 | search and alignment, 8.4 |
| rows, 17.1.44 | databases, 22.9.3 |
| selection to table, 17.1.37 | novo, 12.10 |
| chemical, 10.3.16 | design, 12.9 |
| covalent, 16.10.1 | decompose.library, 21.6.9 |
| bond, 5.6.2, 21.9.3 | decomposition, 10.35.4, 10.36.1, 17.4.25 |
| docking, 12.8, 12.8.1, 16.16, 21.9.3 | decoration, 16.18 |
| delete, 3.6.2.1, 4.6.6, 7.6.8, 22.4.9 | tether, 6.8.13 |
| alignment, 8.7.5 | toggle, 6.8.16 |
| all, 3.6.2.2 | CPK, 6.1.5 |
| column row, 17.1.38 | angle, 6.9.2 |
| label, 6.8.9 | chemical, 10.3.3 |
| alignment, 8.7.5 | dihedral.angle, 6.9.3 |
| all, 3.6.2.2 | distance, 6.8.10, 6.8.14, 6.9.1 |
| angle.label, 6.9.4 | electrostatic, 3.6.3.21 |
| column, 17.1.38 | energy.gradient, 6.8.17 |
| distance.label, 6.9.4 | hydrogen, 6.1.7 |
| label, 6.8.9 | polar, 6.1.7 |
| row, 17.1.38 | macroshape, 6.3.6 |
| selection, 3.6.2.1 | meshes, 6.3.5 |
| tether, 9.21.5 | and display.macroshape, 3.7.6 |
| dendrogram, 10.30.1 | molecule, 10.3.24 |
| denovo, 12.9 | origin, 6.8.12 |
| density, 5.3.4, 5.3.6, 5.3.7, 22.2.27, 22.2.28 | potential, 3.6.3.21 |
| depth, 6.3.12, 6.10.5 | representations, 3.7.1 |
| deselect, 22.2.7 | restraints, 6.8.14 |
| design loop, 9.4, 9.21.10 | ribbon, 6.1.3 |
| deviation, 22.4.7 | skin, 6.1.4 |
| dfa, 15.3.3 | status, 22.2.32 |
| dfz, 15.3.2 | surface, 6.1.6, 6.3.1 |
| dialog, 7.6.5 | surfaces, 3.7.6 |
| diffuse, 3.7.2 | table, 10.3.3 |
| dihedral, 5.5.8, 6.8.5, 22.2.18 | tethers, 6.8.13 |
| angle, 5.5 | wire, 6.1.1 |
| dimensional, 22.8.6 | xstick, 6.1.2 |
| directories preferences, 4.7.2 | distance, 5.5, 5.5.6, 6.8.10, 6.9, 10.31, 22.2.12, 22.4.8, 22.4.10 |
| directory, 4.7 | faq, 22.4.10 |
| disappearing labels, 22.1.12 | restraint, 12.5 |
| dislay ligand receptor interaction, 10.6 | label, 4.7.7 |
| display, 4.1.4, 4.1.13.1, 4.7, 5.2.3, 5.2.3.1, 5.2.3.2, 6.8.15, 6.14, 10.25, 12.2.1.3.3, 22.2.4, 22.2.5, 22.2.8, 22.2.10, 22.2.11, 22.2.17, 22.2.21, 22.2.30, 22.2.32, 22.4.10, 22.4.11, 22.4.20, 22.8.4 | distances, 3.7.3 |
| chemical, 6.8.11 | disulfide, 9.10, 9.17 |
| delete distances, 6.9.4 | bonds, 9.17 |
| dihedral, 6.9.3 | diverse set, 17.7 |
| distance restraints, 6.8.14 | dock, 12, 12.11, 16.10, 16.10.1, 21.9.3, 21.11.1, 21.11.2, 21.12.1, 22.5.3, 22.5.4, 22.5.5, 22.5.7, 22.5.8, 22.5.10, 22.5.11, 22.5.12, 22.5.13, 22.5.14, 22.5.15, 22.5.16, 22.5.21 |
| distance2, 6.9.1 | apf, 16.17 |
| angles, 6.9 | chemical table, 12.3.4 |
| formal charge, 6.1.9 | command, 22.5.16 |
| gradient, 6.8.17 | macrocylce, 22.5.20 |
| hbond, 13.1.9.3 | start, 12.1 |
| hbonds, 13.1.9.4, 16.3.4 | table, 16.10 |
| hydrogen, 6.1.7 | covalent, 16.10.1 |
| atoms ligand editor, 16.3.3 | docked ligand strain, 12.1.10 |
| mesh, 6.3.5 | docking, 5.6.5, 12, 12.1, 12.2, 12.2.1, 12.4.5, 12.6, 12.6.1, 12.6.2, 12.6.3, 12.13, 12.13.1, 12.13.2, 12.13.3, 12.13.4, 12.13.5, 12.13.6, 12.13.8, 12.13.9, 12.13.10, 13.1, 13.1.1, 13.1.2, 13.1.6, 13.2, 13.5, 16.10, 16.10.1, 16.11, 21.9, 21.9.1, 21.9.2, 21.11.3, 21.12, 21.12.2, 22.5, 22.5.1, 22.5.9, 22.5.17, 22.5.18 |
| meshes, 6.3.8 | batch index, 12.3.2.4 |
| options, 16.3 | covalent, 12.8 |
| planar angle, 6.9.2 | display, 12.4.6 |
| tab, 3.7.1, 22.2.16 | explicit group, 21.12.2 |
| macrocycles, 12.2.1.3 | drug, 10.11, 22.8.7, 22.8.9 |
| maps, 12.2.1.1, 12.2.1.2 | bank, 4.2, 4.2.8, 10.1 |
| preferences, 12.2.1.3 | like, 10.11.4 |
| database scan, 12.2.1.3.2 | drugbank, 10.1 |
| display, 12.2.1.3.3 | druglikeness, 10.4.9 |
| general, 12.2.1.3.1 | dsPocket, 4.1.8 |
| project, 13.1.5 | dual alanine scanning, 12.6.4 |
| table, 13.1.5 | easy rotate, 3.6.3.12 |
| results display, 12.4.6 | ecfp, 11.3 |
| setup, 22.5.13 | edit, 5.2.3.1, 16.5.8, 22.8.3 |
| start, 12.2.1 | 2D, 16.5.1 |
| steps, 12.2 | add sequence, 10.4.17 |
| template, 12.7 | alignment, 8.7.1 |
| templates, 16.12.3 | chemical moledit, 10.3.26 |
| tutorials, 21.9 | ligand, 16.5, 16.5.1 |
| waters, 12.1.8 | 2D, 16.5.1 |
| background, 22.5.19 | editor preferences, 16.2 |
| batch, 12.3.2 | multiple substituents, 16.5.2 |
| conformations, 22.5.20 | tools, 3.6.2.17 |
| flexible.rings, 22.5.20 | menu, 3.6.2 |
| hitlist, 12.4.3 | molecular document, 7.6.1 |
| interactive, 12.3.1 | molecule, 10.4 |
| preparation, 12.2.1 | molt, 18.3 |
| procedure, 12.3 | selection, 3.6.2.5 |
| rank, 12.4.3 | slide, 7.4.1 |
| results, 12.4, 12.4.1, 12.4.2, 12.4.3 | table row, 17.1.24 |
| sampling, 22.5.20 | molecule, 10.3.26 |
| score, 12.4.3 | structure, 10.3.26 |
| stack, 12.4.2 | editor, 22.4.12 |
| template, 12.7 | editpdbsearch, 3.6.2.12 |
| document, 7.6.4, 7.6.5 | eds, 5.3.4, 5.3.6, 5.3.7 |
| navigation, 7.6.7 | effect of mutation, 9.15, 9.16 |
| documents, 6.15.3 | on binding tutorial, 21.5.3 |
| dollar, 22.10.3 | example2, 21.5.3.1 |
| donator, 10.4.9 | stability tutorial, 21.5.4 |
| envelope, 3.7.1 | effort, 10.23, 10.37, 22.5.12 |
| surface, 4.7.5 | electron, 5.3.4, 5.3.6, 5.3.7, 22.2.27, 22.2.28 |
| dotted line, 6.1.3 | denisty map, 5.3.5 |
| lines, 22.2.34 | density map, 3.6.1.7, 3.6.5, 5.3.4, 5.3.6, 12.11 |
| double, 10.4.10 | contour, 3.6.5 |
| doublet, 10.4.7 | electrostatic coloring scale, 22.2.38 |
| download, 22.1.1, 22.9.3 | potential, 3.6.3.21 |
| dpc, 15.3.4 | surface, 6.3 |
| drag, 4.1.11, 4.7.7, 6.8.3, 7.6.4, 8.6.6, 22.4.5 | electrostatics, 6.3.1, 12.13.8 |
| and drop sequences, 8.6.6 | elegant sketch, 6.10.4 |
| residue label, 3.6.3.16 | element, 10.4.10 |
| draganddrop, 4.1.11 | eln, 19.7 |
| draw, 10.4.18, 10.35.5, 22.8.2 | embed browser, 7.11 |
| chemical, 10.4.1 | powerpoint03, 7.8 |
| drop, 4.1.11, 7.6.4, 8.6.6, 22.4.5 | powerpoint07, 7.9 |
| activeicm, 7.13 | faq, 22, 22.2, 22.2.13, 22.4, 22.5, 22.7, 22.10, 22.10.2 |
| script, 7.13 | ISISdraw, 22.8.3 |
| browser, 7.7, 7.11 | MolCart, 22.9 |
| firefox, 7.7, 7.11 | activeicm, 22.3 |
| internet.explorer, 7.7, 7.11 | path, 22.3.3 |
| microsoft, 7.7 | alignment secondary structure, 22.6.2 |
| powerpoint, 7.7, 7.8, 7.9, 7.10 | apf model, 22.8.12 |
| empty hostid, 22.1.18 | atom charge, 22.4.21 |
| enamine, 10.5.5 | display, 22.2.17 |
| real, 13.5 | autosave, 22.2.33 |
| enantiomer, 22.5.21 | backbone, 22.2.13 |
| enantiomers, 12.1.3 | background color, 22.2.2 |
| energy, 5.6.3, 6.8.15, 10.27, 10.27.2, 12.4.2, 22.5.1, 22.5.2, 22.9.8 | job, 22.5.19 |
| circles, 13.1.11 | beep, 22.2.35 |
| maps, 12.2.1.1, 12.2.1.2 | binding energy, 22.5.2 |
| terms, 9.21.19 | blend transition, 22.2.31 |
| ensemble, 12.6.2 | breaks, 22.2.34 |
| calculations, 9.21.18 | change torsion, 22.4.16 |
| entropy, 10.17, 10.27.1 | chem table display, 22.8.4 |
| enumerate formal charge states, 10.18 | chemical monitor, 22.8.10 |
| reaction, 21.6.10 | query2, 22.8.1 |
| enumeration, 10.35.4 | cheminformatics, 22.8 |
| eps, 10.2.6 | clipping plane, 22.2.11 |
| epsilon, 22.4.15 | closest, 22.4.22 |
| eraser, 10.4.11 | color carbon, 22.2.4 |
| errno, 22.1.3 | skin, 22.2.16 |
| error, 22.1.3, 22.1.19, 22.2.35 | command line display, 22.2.32 |
| evaluate score strain, 16.4 | convert chemical from pdb, 22.4.1 |
| exact, 10.31 | covalent bond, 22.4.2 |
| excel, 10.2.3 | delete, 22.4.9 |
| exclude fragment, 10.5.2 | descriptors, 22.8.15 |
| volume, 16.3.11 | deselect, 22.2.7 |
| exit, 3.6.1.19 | dihedral, 22.2.18 |
| explicit, 10.3.28, 12.6.1 | dock charge groups, 22.5.22 |
| flex, 12.6.1 | probe, 22.5.13 |
| group, 12.6.3 | racemic, 22.5.21 |
| docking, 12.6.3 | repeat, 22.5.5 |
| groups, 21.12.2 | working directory, 22.5.23 |
| export, 5.5.10, 19.4 | docking, 22.5 |
| dock project, 16.21 | docktime, 22.5.11 |
| pdb, 4.5 | dollar, 22.10.3 |
| extra windows, 6.2 | download install, 22.1.1 |
| extract, 4.4.2, 8.1, 10.1.3, 22.4.12, 22.8.8 | druglikeness, 22.8.9 |
| 2D, 10.1.1 | energy, 22.5.1 |
| 3d coordinates to spreadsheet, 10.1.3 | error admin, 22.1.10 |
| icb, 3.6.1.5 | extract ligand, 22.8.8 |
| object icb, 4.4.2 | flexible dock, 22.5.15 |
| sub alignment, 8.3.10 | ring docking, 22.5.20 |
| icb, 3.6.1.5 | font size, 22.2.1 |
| pharmacophore, 10.5.6.4 | foreground table, 22.10.4 |
| gui, 22.2 | structure, 22.4 |
| guided dock, 22.5.3 | superimpose, 22.4.6 |
| hitlist, 22.5.7 | surface display, 22.2.37 |
| hydrogen bond acceptors, 22.8.17 | thoroughness, 22.5.12 |
| iSee, 22.2.30 | transparent ribbon, 22.2.3 |
| icmPocketFinder, 22.5.10 | truncate mesh, 22.2.15 |
| insert column, 22.8.7 | view stack, 22.9.8 |
| installation, 22.1 | weak hydrogen bonds, 22.4.20 |
| interactions, 22.2.12 | write pdb, 22.4.3 |
| ligandbox, 22.5.9 | faqcontour, 22.2.28 |
| measure distance ring, 22.8.16 | faqhbondstrength, 22.2.29 |
| merge, 22.4.5 | faqmaps, 22.2.27 |
| modeling, 22.7 | faqoda, 22.2.26 |
| molcart 64bit, 22.1.3 | faqstereo, 22.1.14 |
| query, 22.9.5 | fasta, 8.1.5 |
| sdf, 22.9.4 | fbdd, 13.2 |
| text search, 22.9.6 | fft, 12.13.1 |
| molecule c, 22.2.5 | protein protein docking, 12.13.1 |
| moledit, 22.8.2 | file, 3.6.1.3 |
| movie planes, 22.2.19 | close, 3.6.1.13 |
| newscript, 22.10.1 | compatible, 3.6.1.10 |
| nmr, 22.4.18 | export, 3.6.1.12 |
| nvidia error, 22.1.2 | high quality image, 6.15.1 |
| origin, 22.2.10 | load, 3.6.1.7 |
| plist, 22.1.9 | menu, 3.6.1 |
| pmf score, 22.5.6 | password, 3.6.1.11 |
| pockets, 22.2.14 | preferences, 3.6.1.16 |
| preserve coordinates, 22.8.6 | quick image, 3.6.1.14 |
| quad buffer, 22.1.7 | icb, 4.1.10 |
| receptor selection, 22.5.14 | recent, 3.6.1.17 |
| reload dock, 22.5.4 | bak, 3.6.2.11 |
| remove salt, 22.8.14 | filter, 18.2, 22.2.4 |
| select, 22.2.6 | selection, 4.6.8 |
| renumber, 22.4.4 | filters, 13.1.5 |
| residue number selection, 22.2.36 | find chemical, 10.3.32 |
| rmsd, 22.4.7 | fingerprint, 11, 11.3, 21.13, 22.8.1, 22.9.5 |
| rmsdtips, 22.4.8 | method, 11.3 |
| rocking active ppt, 22.3.1 | fingerprints, 22.8.15 |
| speed, 22.3.2 | firefox, 22.3 |
| rotate chemical, 22.8.13 | fit, 10.3.34, 12.11, 22.5.15 |
| scale display, 22.2.38 | fitting, 12.11, 17.4.16 |
| scanScoreExternal, 22.5.17 | flexibility, 5.6.4, 12.6.3, 21.12 |
| scanScoreExternal2, 22.5.18 | flexible, 10.37, 12.6, 12.6.1, 12.6.2, 21.12.1, 22.5.15 |
| score, 22.5.8 | APF superposition to template, 10.37.4 |
| script, 22.10 | docking, 16.13 |
| sequence secondary structure, 22.6.1 | receptor groups, 16.13 |
| alignments, 22.6 | ring sampling level, 12.2.1.3 |
| smiles, 22.8.11 | flood, 9.21.17 |
| solvent accessible surface table, 22.4.19 | fog, 3.6.3.5, 6, 6.10.1 |
| ss, 22.4.17 | font, 4.7, 4.7.7, 5.2.3.1, 6.8.2, 6.8.3, 8.7.7, 8.7.7.1, 10.3.28, 17.1.40, 17.7.4 |
| size, 8.7, 22.1.16, 22.2.1 | labels, 21.1.3 |
| form view, 17.1.5 | user interface, 22.2 |
| formal, 5.1.3, 22.4.21 | graphics, 4.1 |
| charge, 6.1.9, 10.15, 10.18 | card, 22.1.2 |
| format, 17.1.2, 17.1.40 | controls, 6 |
| formula, 10.4.9, 10.11 | defects, 22.1.12 |
| fragment, 10.3.35, 10.36.1, 13, 13.2, 16.11 | effects, 6.10 |
| linking, 16.11 | panel, 6.2 |
| screening, 13.2 | preferences, 4.7.3 |
| fragments, 10.8 | shadow, 3.6.3.13, 6.10.2 |
| frame, 8.3.3 | green arrows, 8.7.16, 22.6.2 |
| free energy, 9.13, 9.14 | lines, 8.2, 22.6.1 |
| radical, 10.4.7 | grid, 10.3.3, 10.37, 21.12.1, 22.8.4 |
| wilson regression analysis, 10.36.2 | grob, 4.7.5, 5.3.4, 5.3.6, 5.3.7, 6.3 |
| freedomspace, 10.5.5 | group, 10.36.1, 16.6 |
| freeze column, 17.1.30 | column, 17.1.46 |
| row, 17.1.31 | groupGen, 16.18 |
| frequency, 10.3.35 | groups, 10.8, 10.11, 10.12 |
| front, 6.3.10, 6.13.1 | guanidinium, 10.15 |
| full model, 9.1.3 | gui, 4.1.1, 4.7.4 |
| builder, 9.1.3 | menus, 3.6 |
| multiple chain, 9.1.3.1 | preferences, 4.7.4 |
| refinement, 9.1.3 | tabs, 3.7 |
| scene antialias, 3.6.3.10 | guided docking, 12.5, 22.5.3 |
| screen, 3.6.3.8 | h-bond, 5.2.3, 5.2.3.1, 5.2.3.2, 22.2.12 |
| function, 17.1.26, 17.1.32 | halogen, 10.11.2 |
| functional.groups, 10.13 | hardware stereo, 3.6.3.7, 22.1 |
| fuzzy, 12.7 | hba, 13.1.10 |
| gap, 9.4 | hbd, 13.1.10 |
| general preferences, 4.7.5 | hbond, 5.2, 21.3.6, 22.2.29 |
| generalselecttools, 4.6.1 | strength, 22.2.29 |
| generator, 5.3.3, 10.23 | header, 4.2.1.6, 17.4.9 |
| getting started, 4 | health, 5.6.3 |
| giga search, 10.5.5 | heatmap, 17.4.7 |
| sized library, 13.5 | example, 17.4.7.1 |
| gigasearch, 10.5.5 | helix, 22.2.20 |
| ginger, 10.23 | help, 2 |
| glasses, 6.6, 22.1.6, 22.1.14 | videos, 2 |
| glutamine proline, 9.21.2 | hetero, 10.3.28 |
| google, 3.6.1.7 | scan, 16.7 |
| objects, 6.3.7 | hidden block format, 8.7.11 |
| 3D, 3.7.6, 6.3.7 | width, 8.7.11 |
| gpcr_model, 21.5.1 | hide, 17.1.39 |
| graft loop, 9.5 | column, 17.1.28 |
| graphical, 22.2.4 | high, 3.6.1.15 |
| display, 5.1.3.1, 5.1.3.2, 10.7.2, 10.7.3 | quality, 3.6.3.11 |
| tutorial, 21.1 | highlight new data, 10.3.7.1 |
| 2D3D labels, 21.1.4 | his, 22.4.15 |
| annotation, 21.1.2 | histidine, 9.21.2, 22.4.15 |
| color representation, 21.1.1 | tautomer, 22.4.15 |
| bins, 17.4.3 | web, 3.3.5 |
| options, 17.4.2 | chemical clusering, 10.28.1 |
| bin.size, 17.4.2 | icm browser convert display pocket, 3.1.4 |
| bins, 17.4.3 | distances angles, 3.1.9 |
| color, 17.4.2 | get started, 3.1.1 |
| source, 17.4.2 | graphical display, 3.1.2 |
| style, 17.4.2 | effects, 3.1.5 |
| title, 17.4.2 | images, 3.1.7 |
| historeceptomics, 4.2.10 | labels annotation, 3.1.6 |
| hitlist, 12.4, 12.4.3, 13.1.8, 13.1.9.1, 13.1.9.5, 14.4, 22.5.7 | pro crystallographic tools, 3.2.6 |
| cluster apf, 13.1.9.5 | get started, 3.2.1 |
| columns, 12.4.3.1 | graphics, 3.2.2 |
| export, 12.4.4 | plots, 3.2.8 |
| homology, 4.2.1.2, 4.2.5, 9, 9.1, 9.1.1, 9.1.1.1, 9.1.2.1, 9.1.2.2, 9.1.3.1, 9.2, 9.3, 9.8, 21.5 | sequence analysis, 3.2.7 |
| model, 9.1, 9.1.1.2 | structure analysis, 3.2.3 |
| introduction, 9.1.1 | superimpose, 3.2.5 |
| older versions, 9.1.1.3 | surfaces, 3.2.4 |
| hover, 17.4.26 | selections, 3.1.3 |
| 3D editor, 21.7 | superimpose, 3.1.8 |
| add columns, 10.3.4 | search, 4.2 |
| cluster center, 10.28.2 | use gui, 4.1 |
| color 2D by ph4, 10.5.6.5 | hrydrogen.bond, 22.2.29 |
| copy 2D, 10.3.16 | html, 3.6.1.12, 4.3, 7.6.1, 7.6.7, 22.3 |
| paste, 10.3.6 | html-doc font size, 22.2.1 |
| decompose, 21.6.9 | hybridization, 10.4.3, 10.5.1 |
| duplicate chemicals, 10.3.21 | hydrogen, 5.2.3, 5.2.3.1, 5.2.3.2, 6.1.8, 10.4.3, 10.5.1, 21.3.6, 22.2.12, 22.8.7, 22.8.10 |
| edit table, 10.3.17 | atom display, 16.3.3 |
| tree, 10.28.4 | bond, 5.2, 6.1.8, 10.6, 13.1.9.3, 21.3.6 |
| excel, 10.3.10 | acceptors, 22.8.17 |
| extract 3D ph4, 10.5.6.4 | donor, 10.38.1 |
| filter, 10.3.12 | label edit, 5.2.3.1 |
| find replace, 10.3.13 | move, 5.2.3.2 |
| mark row, 10.3.14 | bonds, 5.2.4, 12.1.5 |
| markush, 21.6.8 | bond, 10.4.9, 22.4.20 |
| structure, 21.6.7 | hydrogens, 10.3.28 |
| merge tables, 10.3.23 | remove, 10.3.18 |
| properties, 10.3.19 | hyperlink, 7.6.1, 7.6.2, 17.1.40 |
| reactions, 21.6.10 | hyrophobic, 10.38.1 |
| reorder, 10.28.3 | iSee, 3.6.1.5, 3.6.1.12, 4.1.10, 6.15.3, 21.2, 22.2.30, 22.2.31, 22.3.3 |
| sdf, 10.3.9 | icb, 4.4.2, 4.5, 22.2.30, 22.3.3 |
| show hide, 10.3.8 | icm, 22.3.3 |
| sort column, 10.3.5 | chemist howto chemical search, 3.4.3 |
| standardize, 10.3.18 | cluster, 3.4.5 |
| table hyperlinks, 10.3.15 | combi library, 3.4.7 |
| print, 10.3.11 | ph4, 3.4.4 |
| activeicm, 3.3 | plots, 3.4.8 |
| create molecular documents, 3.3.3 | sketch, 3.4.1 |
| slides, 3.3.2 | spreadsheets, 3.4.2 |
| getting started, 3.3.1 | stereoisomers tautomers, 3.4.6 |
| ppt, 3.3.4 | pro 3D ligand editor, 3.5.1 |
| chemsuper, 3.5.4 | loaded ligand, 12.3.1.2 |
| energy, 3.5.3 | loop, 9.1.4.2 |
| qsar, 3.5.5 | modeling, 9.1.4 |
| tutorials, 3.5 | table ligand, 12.3.1.1 |
| tutorials, 3.4 | modeling, 9.1.4 |
| hanging, 22.1.13 | interface prediction, 21.10 |
| object, 5.1, 21.3.2 | internal hydrogen bonds, 12.1.5 |
| script, 17.1.40 | internet explorer, 22.3 |
| icm-crash, 22.1.13 | interrupt, 6.10.7.3 |
| icmFastAlignment, 8.4 | animation, 6.10.7.3 |
| icmPocketFinder, 5.6.6, 22.2.14, 22.5.10 | introduction, 1 |
| icmdb, 19 | invert selection, 17.1.23 |
| icmjs, 7.16 | invisible residue label, 22.1.12 |
| icmpocketfinder, 21.3.7 | iqr, 17.4.23 |
| id, 17.1.27 | isee, 7.6.5 |
| identity, 4.2.1.2 | isis, 10.4.18 |
| image, 4.1.14, 4.7, 4.7.5, 6.15.3, 7.6.3, 10.2, 10.2.6, 17.4.21, 22.1.20 | isostere, 13.4 |
| advanced, 6.15.3 | isotope, 10.4.3, 10.5.1 |
| distortion, 22.1.20 | iupac, 10.2.7, 10.3.20 |
| preferences, 4.7.6 | javascript, 7.16 |
| problem, 22.1.20 | job, 22.5.19 |
| multiple, 3.6.1.7 | join, 10.32 |
| quality, 3.6.3.11 | jpg, 6.15 |
| quick, 3.6.1.14, 6.15.2 | means, 17.7.1 |
| images, 6.15 | kcc, 15.3.1, 15.5 |
| impose, 12.6.2 | keep carboxyls neutral, 12.2.1.3 |
| in-a-window, 22.1.7 | kernel regression, 15.3.1 |
| inchi, 10.20.3 | chemical, 10.4.10 |
| increment, 17.1.27 | keyboard mouse, 6.11 |
| id, 17.1.27 | keystokes in chem-edit, 10.4.10 |
| index, 22.9.6 | kmz, 3.7.6, 6.3.7 |
| models, 15.1.2 | knime, 20 |
| induced, 22.5.15 | label, 4.7.7, 17.7.4, 22.2.17 |
| fit, 12.6, 12.6.1, 12.6.3, 16.13, 21.12, 21.12.1 | atoms, 6.8.2 |
| insert, 7.6.4 | color, 6.8.7 |
| column, 17.1.26 | move, 6.8.4 |
| image, 7.6.3, 17.1.34 | residues, 6.8.3 |
| table, 17.1.34 | sites, 6.8.6 |
| row, 17.1.33 | variables, 6.8.5 |
| script, 7.6.4 | 2D, 3.7.3 |
| install, 1, 10.10.1, 19.1, 22.1.3, 22.1.4 | 3D, 3.7.3, 6.8.1 |
| installation, 22.1 | atom, 6.8.1 |
| interaction, 5.5.3, 10.6, 22.2.12 | atoms, 6.8.2 |
| fingerprint, 13.1.9.6 | color, 6.8.7 |
| fingerprints, 13.1.9.6 | custom, 6.8.8 |
| lists, 13.1.10 | delete, 6.8.1, 6.8.9 |
| restraint, 12.5 | distance, 6.8.10 |
| restraints, 12.5 | drag, 3.6.3.16 |
| interactions, 16.3.12, 22.5.2 | move, 3.6.3.16, 6.8.4 |
| interactive, 12.3.1, 21.2 | residue, 6.8.1 |
| site, 6.8.1 | edit, 16.5 |
| sites, 6.8.6 | energy, 16.3 |
| variable, 6.8.1 | hydrogen.bond, 16.3 |
| variables, 6.8.5, 22.2.18 | pocket, 16.3 |
| labeling, 6.8.1 | preferences, 16.2 |
| labels, 6.8, 10.3.28 | restraint, 16.12 |
| distances, 6.8.10 | surface, 16.3 |
| tab, 3.7.3 | tether, 16.12 |
| landscape, 4.7.6 | optimization, 21.11.3 |
| large chemical space, 21.6.4 | pocket, 4.1.8 |
| font, 22.1.16 | receptor.contact, 5.5.3 |
| size, 22.1.9 | ligand_pocket_interactions, 5.2.4 |
| sdf, 10.1.2 | ligedit distance restraint, 16.12.2 |
| layer, 6.14 | tab, 3.7.5 |
| layers, 6.14 | tether, 16.12.1 |
| learn, 10.21, 10.22, 11, 11.1, 17.6, 22.8.12 | light, 3.7.2 |
| learning, 11 | tab, 3.7.2 |
| theory, 11.5 | lighting, 6.3.9.4, 6.5 |
| least.squares, 17.4.16 | likeness, 10.11, 22.8.9 |
| library, 10.35.4 | line, 4.7.5, 17.7.4, 22.2.12 |
| reaction, 21.6.10 | lineWidth, 4.7.3 |
| license, 22.1.4 | link, 8.3.9 |
| ligand, 5.2.2, 10.6, 10.27, 10.27.1, 10.27.2, 12.1, 12.6, 12.13.6, 12.13.7, 16.3.12, 16.3.13, 16.5.8, 16.10, 16.11, 22.4.5, 22.4.11, 22.5.2, 22.5.9, 22.8.8 | structure to alignment, 21.4 |
| aide, 12.10 | linker, 12.14 |
| based screen, 10.38.3, 13.3 | links, 4.6.20 |
| best replace, 16.6 | linux, 10.10.1 |
| binding, 9.16 | lipinski rule, 10.34 |
| code, 4.2.1.3, 4.2.7 | list, 4.6.18 |
| considerations, 12.1.2 | lmhostid, 22.1.18 |
| editor, 16, 16.10, 16.10.1, 16.16, 16.17 | load, 3.6.1.3, 3.6.1.17, 5.3.4, 5.3.6, 5.3.7, 8.1 |
| bioisostere, 16.8 | example alignment, 8.3.14 |
| covalent docking, 16.16 | nmr model, 4.2.1.4 |
| mrc, 16.15 | protein structure, 5.1.1 |
| preferences, 3.6.2.18 | sequence, 8.1 |
| energetics, 10.27 | extract pdb, 8.1.3 |
| conformational entropy, 10.27.1 | from file, 8.1.4 |
| strain, 10.27.2 | paste, 8.1.2 |
| pocket, 5.2.4, 22.4.11 | swissprot, 8.1.1 |
| surface, 16.3.2 | libraries, 9.21.6 |
| receptor contacts, 16.3.12 | local, 22.2.24, 22.2.25 |
| display, 5.2 | databases, 18 |
| interaction, 10.6 | database.browse, 18.2 |
| strain, 16.3.10 | edit, 18.3 |
| surface, 5.2.2 | query, 18.4 |
| tether, 16.12 | row, 18.3 |
| ligand-based, 13, 13.3 | localpdb, 22.2.24 |
| convert, 9.21.1 | localseq, 22.2.25 |
| editor, 16, 16.1 | lock, 6.3.10, 6.13.1, 10.3.31 |
| binding.re-dock ligand, 16.9 | log, 17.4.6, 17.4.11 |
| display, 16.3 | logD, 10.11.6 |
| logS, 10.4.9, 10.11 | matched pair, 10.36.6, 21.6.11 |
| logarithmic, 17.4.11 | analysis, 10.36.6 |
| logout, 3.6.1.19 | materials, 3.7.6 |
| loop, 9.3, 9.5, 22.2.20 | max, 17.7.1 |
| analysis, 9.7 | maxColorPotential, 4.7.10 |
| design, 9.4 | maximum common substructure, 10.28.6, 10.30, 10.30.1 |
| find pdb segments, 9.7 | dendrogram, 10.30.1 |
| model, 9.3, 9.4, 21.5.2 | mcs, 10.28.6, 10.30.1 |
| tutorial, 21.5.2 | rgroup decomposition, 10.28.7 |
| modeling, 9.1.4.2, 9.6, 9.7, 9.21.10 | mean, 17.4.6, 17.4.23, 22.4.7 |
| preferred residues, 9.6 | measure distance, 22.8.16 |
| model, 9.21.9 | to ring, 22.8.16 |
| sample, 9.21.9 | median, 17.4.6, 17.4.23 |
| energy water, 9.21.17 | membrane, 12.1.7, 14.3 |
| mac, 10.10.1, 22.1.9, 22.1.16 | exposed docking, 12.1.7 |
| font, 22.1.16 | memory, 10.1.2 |
| size, 22.1.16 | menu, 7.6.5 |
| machine learning, 21.13 | chemistry, 3.6.14 |
| macrocycles, 9.20 | docking, 3.6.15 |
| macros, 7.14 | homology, 3.6.13 |
| macroshape, 3.6.3.22, 6.3, 6.3.6 | molmechanics, 3.6.16 |
| make, 6.10.7.1, 17.1.1 | tools chemical search, 3.6.11 |
| alignment, 8.6.1 | molecular editor, 3.6.12 |
| animation, 6.10.7.1 | windows, 3.6.17 |
| apf docking sar model, 15.6 | merge, 10.32, 22.4.5 |
| complex, 13.1.9.4, 16.22 | two sets, 10.32 |
| flat, 22.8.13 | mesh, 5.2.1, 5.2.2, 5.3.4, 5.3.6, 5.3.7, 6.3, 6.3.9.1, 6.3.9.2, 6.3.9.4, 6.3.10, 6.3.11, 6.3.12, 6.13.1 |
| molecular document, 7.6 | clip, 6.3.10 |
| molt, 18.1 | color lighting, 6.3.9.4 |
| receptor maps, 12.2.1.2 | options, 6.3.9 |
| selection, 4.6 | representation, 6.3.9.3 |
| bond, 22.4.2 | save, 6.3.11 |
| disulfide, 9.10, 22.4.17 | options, 6.3.9 |
| molecule, 3.6.1.1 | meshes, 6.3.2, 6.10.5 |
| object, 3.6.1.1 | surfaces grobs, 6.3 |
| making molecular slides, 7.1 | tab, 3.7.6 |
| html, 7.6 | metabolic oxidation, 15.7 |
| manual change torsion, 16.5.4 | min, 17.7.1 |
| map, 4.7.7, 5.3.4, 5.3.6, 5.3.7 | minimization, 9.18 |
| cel, 5.3.5 | cartesian, 9.21.8 |
| maps, 12.2.1.1, 12.2.1.2, 12.13.8, 21.12.1, 22.2.27, 22.2.28, 22.5.9 | global, 9.21.8 |
| mark, 17.1.45 | local, 9.21.8 |
| row, 17.1.45 | minimum specifications, 1 |
| color, 17.4.14 | mmff, 9.21.6, 10.4.16, 22.2.17, 22.8.5 |
| shape, 17.4.13 | type, 6.8.2 |
| size, 17.4.13 | mmp, 21.6.11 |
| markush, 10.28.7, 10.35.1, 10.35.3, 10.36.1, 21.11.3 | mnSolutions, 4.7.10 |
| docking, 21.11.3 | model, 9, 9.1, 9.1.1, 9.1.1.1, 9.1.2, 9.1.2.1, 9.1.2.2, 9.1.3.1, 9.3, 9.8, 9.18, 21.5 |
| library, 21.6.8 | domain interaction, 9.18 |
| mass, 22.4.22 | start, 9.1.1.2 |
| modelers view, 9.1.4.1 | protein, 9.21.11 |
| view, 9.1.4.1 | terms, 9.21.19 |
| modeling, 9.21.3 | view stack, 9.21.15 |
| options, 9.1.1.1 | modeling, 9 |
| modeller view, 9.1.4 | table, 10.20.2 |
| modification history, 16.5.6 | weight, 10.4.9 |
| modify, 9.12 | molecule, 22.2.8, 22.8.3 |
| amino acid, 9.12 | editor, 10.4 |
| group, 9.11 | moledit, 10.4.8 |
| mol, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6, 10.4.13, 21.11.2 | molmechanics, 22.9.8 |
| mol2, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6 | minimize, 9.21.8 |
| molcart, 10.10, 10.10.1, 10.10.2, 10.10.3, 10.10.4, 10.10.5, 18, 19, 22.1.3, 22.8, 22.8.1, 22.9.3, 22.9.4, 22.9.5, 22.9.6 | mmff, 9.21.6 |
| add database, 10.10.3 | molscreen, 13, 15 |
| administration, 10.10.5 | custom model panel, 15.4 |
| connect, 22.9.2 | load models, 15.1.1 |
| download dbs, 22.9.3 | run, 15.1 |
| hostid, 22.9.1 | model type, 15.3 |
| installation, 10.10.1 | results, 15.2 |
| license, 22.1.4 | molskin, 6.3.2 |
| search, 10.10.4 | molsynth, 10.11.5 |
| start, 10.10.2 | molt, 18, 18.4 |
| connect, 22.9.2 | monitor, 22.8.10 |
| hostid, 22.9.1 | monochrome, 10.3.28 |
| license, 22.9.1 | montecarlo, 22.9.7 |
| molclart, 22.1.4 | mouse, 4.1.3, 6.11, 6.12 |
| molecular, 10.3.30, 10.3.31, 10.3.34, 10.3.35, 10.23, 22.8.7, 22.8.10 | mov, 6.16, 6.16.2 |
| animations slides, 7 | move, 3.6.3.19, 4.1.11, 4.1.13, 5.2.3.2, 6.3.9.1, 6.3.9.2, 6.12, 6.12.7, 9.18, 22.4.5 |
| documents, 21.2 | column, 17.1.28 |
| dynamics, 14, 14.1, 14.2, 14.3, 14.4 | mesh, 6.3.9.2 |
| membrane, 14.3 | slide, 7.4.2 |
| restraints, 14.2 | structure, 6.12 |
| run, 14.1 | tools, 6 |
| vls, 14.4 | rotate, 6.11 |
| editor, 22.8.2 | slab, 6.11 |
| graphics, 6 | translate, 6.11 |
| matched pairs, 21.6.11 | z-rotation, 6.11 |
| mechanics, 9.21 | zoom, 6.11 |
| convert, 9.21.1 | movie, 6.16.1, 22.2.19, 22.9.7 |
| design loop, 9.21.10 | montecarlo, 22.9.7 |
| edit structure, 9.21.5 | making, 6.16, 6.16.2 |
| gamess, 9.21.16 | open, 6.16, 6.16.2 |
| generate normal mode stack, 9.21.14 | mpa, 21.6.11 |
| his asn, 9.21.2 | mpeg, 6.16, 6.16.1, 6.16.2 |
| ic table, 9.21.13 | mpg, 6.16, 6.16.2 |
| impose conformation, 9.21.4 | mpo, 10.34 |
| minimize, 9.21.8 | binary classification, 10.34.2 |
| mmff, 9.21.6 | custom step function, 10.34.1.2 |
| regularization, 9.21.3 | customized, 10.34.1 |
| sample loop, 9.21.9 | save, 10.34.1.3 |
| peptide, 9.21.12 | special cases, 10.34.1.1 |
| multi apf super, 10.37.7 | display, 4.2.1.5 |
| panel, 6.2 | oda, 5.6.5, 12.13, 12.13.2, 12.13.3 |
| parameter optimization, 10.34 | older version, 3.6.1.10 |
| template, 9.1.4.3 | omega, 6.8.5, 22.2.18 |
| windows, 6.2 | online databases, 10.5.5 |
| multiple, 12.6.2, 21.12.1 | open, 3.6.1.3, 4.4, 17.1.2 |
| chain, 9.1.2.2, 9.1.3.1 | file, 4.4 |
| position group scan, 16.7 | password, 4.4.1 |
| rec, 12.6.2 | with password, 3.6.1.4 |
| receptor, 4.2.2, 21.12 | movie, 6.16, 6.16.2 |
| docking, 16.15 | password, 3.6.1.4, 4.4.1 |
| protein, 22.2.5 | optimal, 5.6.5, 12.13, 12.13.2, 12.13.3 |
| mutant, 9.11, 22.4.13, 22.4.14 | optimize, 9.21.2 |
| mutate, 9.13, 9.14, 22.4.15 | oracle, 19 |
| residue, 22.4.13 | orange, 4.6.5 |
| N C, 22.4.14 | selection, 4.6.5 |
| mutation, 9.11, 9.13, 9.14, 9.16, 21.5.3, 21.5.4, 22.4.13, 22.4.14 | origin, 6.8.12, 22.2.10 |
| protein binding, 9.13 | orthosteric, 5.6.6 |
| ligand, 9.16 | other selection, 4.6.19 |
| peptide, 9.15 | outside, 22.5.9 |
| stability, 9.14 | overlay, 21.3.3, 22.2.5, 22.4.6 |
| mysql, 19 | pH, 10.19 |
| navigate workspace, 4.6.10 | package.activeicm, 7.13 |
| nearest, 22.4.22 | packing, 5.3.1 |
| neural network, 12.4.3.1, 16.18 | pages, 19.7 |
| Torsion Profile Neural Network Prediction Engine, 6.12.6.1 | pairwise, 10.37.5, 10.37.6 |
| new, 8.1 | apf score, 10.38 |
| icm session, 3.6.1.2 | parallelization, 13.1.7 |
| table, 17.1.1 | password, 10.10.5 |
| table, 17.1.1 | paste, 10.4.11, 10.4.18, 17.1.35 |
| nmr, 22.4.18 | pca, 17.5 |
| model, 4.2.1.4 | pdb, 3.6.1.7, 4.2, 4.2.1.1, 4.2.7, 4.5, 5.1.3, 10.7.1, 21.3, 22.2.24, 22.2.25, 22.4.4 |
| nnc, 15.3.5 | chem gl, 10.7.3 |
| nntorsion, 6.12.6.1 | iw, 10.7.2 |
| nof, 10.11.2 | dormat, 4.5 |
| chemical, 10.11.2 | file, 22.4.3 |
| non-contiguous selection, 4.6.18 | html, 4.2.1.6 |
| normal modes, 9.21.14 | preparation, 21.3.11 |
| number of sp3, 10.11.2 | search, 4.2.1, 4.2.1.2, 4.2.1.3, 21.3.1 |
| numbers, 10.3.28 | convert, 9.21.1 |
| nvidia, 22.1.2 | recent, 3.6.1.18 |
| obj, 6.7 | search, 3.7.4, 4.1.2 |
| object, 4.1.11, 4.5, 21.3, 22.2.8 | pdbsearchfield, 3.6.2.13 |
| objects, 5.1.2 | pdbsearchhomology, 3.6.2.15 |
| in table, 17.3 | pdbsearchidentity, 3.6.2.14 |
| in.table, 17.3 | pdbsearcsequence, 3.6.2.16 |
| occlusion, 6.3.12, 6.10.5 | peptide, 4.3, 9.15, 9.20, 12.12 |
| shading, 6.3.12 | docking, 12.12 |
| effect, 6.10.5 | modeling, 9.20 |
| occupancy, 6.1.3, 21.3.10 | editor, 16.20 |
| perspective, 3.6.3.9, 6.10.6 | zoom translate, 17.4.17 |
| ph4, 10.5.6 | axis, 17.4.15 |
| draw 2d, 10.5.6.1 | display, 17.4.15 |
| 3d, 10.5.6.2 | grid, 17.4.15 |
| search, 10.5.6.3 | inline, 17.4.22 |
| pharmacophore, 10.3.35, 10.5.6.5, 21.8.2 | logarithmic, 17.4.12 |
| 2D, 21.6.6 | pls, 10.21, 10.22, 11, 17.6, 21.13 |
| 3D, 21.6.5 | pmf, 22.5.6 |
| clone, 10.5.6.2 | png, 3.6.1.14, 6.15, 6.15.2, 7.6.3, 10.2, 10.2.6 |
| draw2D, 10.5.6.1 | pocket, 4.1.8, 5.2, 5.2.1, 5.2.2, 5.6.6, 21.3.7, 22.2.14, 22.4.11, 22.5.10 |
| draw3D, 10.5.6.2 | conservation, 22.4.12 |
| edit, 10.5.6.1, 10.5.6.2 | properties, 5.8 |
| move, 10.5.6.2 | surface, 5.2.1, 13.1.11 |
| new, 10.5.6.2 | peptide, 4.1.8 |
| search, 10.5.6, 10.5.6.3, 21.6.5, 21.6.6 | properties, 4.1.8 |
| phi, 6.8.5, 22.2.18 | pocketome, 4.2, 4.2.2, 5.8 |
| phylogenetic, 8.7.8 | pockets, 5.6.6 |
| phylogeny, 8.7.8 | point label, 17.4.19 |
| physics-based score, 12.4.3.1 | portait, 4.7.6 |
| pi, 5.2.5 | post edit ligand, 16.5.8 |
| cation, 5.2.5 | screen, 13.1.9 |
| pi, 5.2.5 | postscript, 4.7.6 |
| picking, 6 | potential mean force, 13.1.4 |
| picture, 3.6.1.14, 4.1.14, 6.15.2, 7.6.3 | ppbatch, 12.13.9 |
| tips, 4.1.14 | ppepitope, 12.13.7 |
| chart, 17.4.8 | ppmaps, 12.13.8 |
| pipi, 5.2.5 | pprefine, 12.13.11 |
| pka, 10.15 | ppresults, 12.13.10 |
| planar, 5.5.7, 6.8.5, 22.2.18 | pproc, 12.13.3 |
| angle, 5.5 | ppsetligand, 12.13.6 |
| angle, 6.9.2 | ppsetproject, 12.13.4 |
| plane, 6.3.10, 6.13, 6.13.1, 6.14, 22.2.11, 22.2.19, 22.2.21 | ppsetreceptor, 12.13.5 |
| faq, 22.2.21 | ppt, 7.12, 7.14, 22.3.3 |
| plot, 4.7, 4.7.8, 13.1.9.2, 17.4, 17.4.1, 17.4.4, 17.4.9, 17.4.11, 17.4.13, 17.4.14, 17.4.15, 17.4.16, 17.4.17, 17.4.18, 17.4.20, 17.4.21, 17.4.22, 17.4.23 | predict, 8.3.2, 10.21, 10.22, 11, 11.2, 17.6, 22.8.9, 22.8.12 |
| R group sar, 10.36.4 | disulfide, 9.17 |
| axis, 17.4.11 | metabolic oxidation, 15.7 |
| color, 17.4.14 | predicting bioassays, 11.2 |
| columns, 17.4.6 | compound properties, 11.2 |
| function, 3.6.9, 3.6.9.1 | prediction binding, 9.13 |
| grid, 17.4.15 | preferences, 4.7, 13.1.5, 22.2.24, 22.2.25 |
| header, 17.4.9 | preferred residues, 9.6 |
| inline, 17.4.22 | presentation, 7.6.5, 7.7, 7.12 |
| logarithmic, 17.4.12 | presentations, 7 |
| mark, 17.4.13 | preserve, 22.8.6 |
| mean median iqr, 17.4.23 | press-and-hold to rotate, 10.4.8 |
| point label, 17.4.19 | pretty view, 16.3.6 |
| preferences, 4.7.8 | primary aliphatic amines, 10.15 |
| groups, 17.4.25 | principal component analysis, 17.5 |
| regression, 17.4.16 | regression, 11 |
| selection, 17.4.18 | components, 11.5 |
| alignment, 8.7.4 | sites by apf, 5.4.6 |
| plot, 17.4.20 | superimpose 3D, 5.4.3 |
| alignment, 8.7.4 | grid, 5.4.5 |
| printer.resolution, 4.7.6 | multiple proteins, 5.4.4 |
| pro-drug, 10.26 | protein-protein, 5.6.5, 12.13, 12.13.1, 12.13.2, 12.13.3, 12.13.4, 12.13.5, 12.13.6, 12.13.8, 12.13.9, 12.13.10, 21.10 |
| probe, 12.2.1.1, 22.5.13 | docking refinement, 12.13.11 |
| problem, 22.1.14 | protein-proteindocking, 12.13.7 |
| with selection, 22.1.12 | convert, 9.21.1 |
| prodrug, 10.26 | protonated, 22.4.15 |
| profile, 4.2.10, 8.3.8 | protonation, 10.19, 12.1.4 |
| project, 3.6.1.5, 12.13.4, 19.6, 21.6.4.6 | state, 12.1.4 |
| close, 3.6.1.13 | protonation_ph, 10.19 |
| rename, 3.6.1.9 | protonation_ph_charge, 10.19.2 |
| properties, 6.8.2, 10.11, 10.11.1, 22.8.7 | protonation_ph_concentration, 10.19.1 |
| property, 10.4.9, 22.8.7, 22.8.8, 22.8.9, 22.8.10 | protprot, 12.13 |
| expression, 13.1.9.4 | proximity, 6.3.3, 6.3.4 |
| monitor, 10.4.9 | psa, 10.4.9, 10.11.7 |
| protac, 12.14 | psi, 6.8.5, 22.2.18 |
| protect, 7.6.8 | pubchem, 10.1 |
| protein, 5.4.6, 8, 9.15, 22.4.5 | publication quality images, 6.3.2 |
| chain, 9.4 | pubmed, 4.2.1.7 |
| health, 5.6.3 | purple box, 3.6.3.23, 12.2.1.1, 16.9.1 |
| model, 9.19 | pyramid, 12.1.6 |
| protein docking, 21.10 | pyramidal, 12.1.6 |
| tutorial, 21.10 | qs hydrogen bond, 5.2.3 |
| sculpting, 9.18 | pdb chem gl, 5.1.3.2 |
| sequence, 10.4.17 | iw, 5.1.3.1 |
| structure, 5 | qsar, 10.21, 10.22, 11.1, 21.13 |
| analysis, 5.5 | learn predict, 10.21 |
| closed cavities, 5.5.4 | predict, 10.22 |
| contact areas, 5.5.3 | quad buffer stereo, 22.1 |
| distance, 5.5.6 | buffer, 22.1.7 |
| find related chains, 5.5.1 | quality, 3.6.1.15, 4.7.5 |
| finding dihedral angle, 5.5.8 | query, 9.1.2, 19, 19.3, 22.8.1, 22.9.5, 22.9.6 |
| planar angle, 5.5.7 | molt, 18.4 |
| rama export, 5.5.10 | processing, 10.5.3 |
| ramachandran plot, 5.5.9 | setup, 10.5.1 |
| rmsd, 5.5.2 | quick, 4.1.14 |
| surface area, 5.5.5 | image, 6.15.2 |
| similarity, 5.7 | model multiple chain, 9.1.2.2 |
| tutorials, 21.3 | single chain, 9.1.2.1 |
| analysis, 21.3.4 | start move structure, 4.1.3 |
| contact area, 21.3.5 | read pdb, 4.1.2 |
| convert, 21.3.2 | representation, 4.1.6 |
| hydrogen bond, 21.3.6 | selection, 4.1.5 |
| icmpocketfinder, 21.3.7 | level, 4.6.3 |
| search, 21.3.1 | what is selected, 4.6.4 |
| superimpose, 21.3.3 | display.distance, 6.9.1 |
| superposition, 5.4 | start color, 4.1.7 |
| select, 5.4.1 | quit, 3.6.1.19 |
| table, 10.35.2 | relaxed ligand, 16.3.9 |
| groups, 10.35.2 | reload, 12.4.5, 22.5.4 |
| r-group, 10.28.7, 10.35.2 | dock results, 12.4.5 |
| decomposition, 10.28.7 | remove, 22.2.6, 22.2.7, 22.2.10 |
| enumeration, 10.28.7 | salt, 22.8.14 |
| r-groups, 17.4.25 | explixit.hydrogens, 10.12 |
| racemic, 10.3.28, 10.20.5, 22.5.21 | salt, 10.12 |
| radar, 17.4.6 | rename, 17.1.25 |
| rainbow, 4.7.5, 6.8.16, 10.3.35, 22.2.38 | column, 17.1.25 |
| ramachandran plot, 5.5, 5.5.10 | project, 3.6.1.9 |
| random forest, 11, 21.13 | renumber, 9.2, 22.4.4 |
| range, 6.10.7.2 | reorder column, 17.1.29 |
| rapid isostere replacement, 13.4 | replace chemical, 10.3.32 |
| ratio.selection, 4.7.5 | replacement, 16.6 |
| dock ligand, 16.9 | group, 16.8 |
| reactions, 10.8, 10.35.5 | report, 19.3 |
| reactive cysteine, 5.6.2 | representation, 3.6.3.19 |
| reactivity, 10.11.3 | residue, 4.7.7, 22.2.8, 22.4.15, 22.4.22 |
| read, 3.6.1.3, 3.6.1.17, 4.4, 8.1, 10.3.1 | alternative orientation, 21.3.11 |
| chemical, 10.1 | content, 8.3.1 |
| spreadsheet, 10.3.1 | number selection, 22.2.36 |
| split, 11.1.1 | range, 4.6.18 |
| table, 17.1.2 | content, 3.6.4, 8.3, 8.3.1 |
| pdb, 4.1.2 | mutate, 22.4.13, 22.4.14 |
| table, 17 | residues, 5.2.1, 5.2.2, 22.2.14 |
| reagent, 10.35.5 | resize, 6.3.9.1, 6.15.3 |
| rear, 6.3.10, 6.13.1 | mesh, 6.3.9.1 |
| recent files, 3.6.1.17 | resolution, 4.2.1.3 |
| pdb codes, 3.6.1.18 | restore, 3.6.2.11, 6.3.10, 6.13.1 |
| receptor, 5.2.1, 5.2.2, 10.6, 12.1, 12.6.2, 12.13.5, 12.13.7, 16.3.12, 21.12.1, 22.5.2, 22.5.14, 22.5.15 | default, 22.1.9 |
| considerations, 12.1.1 | recent backup, 3.6.2.11 |
| flexibility, 16.15 | restrained docking, 12.5 |
| pocket, 16.3.1 | restraint, 16.12.1, 16.12.2 |
| surface, 16.3.1, 16.3.2 | restraints, 14.2 |
| flexibility, 21.12.2 | results, 12.13.10 |
| recover, 3.6.2.11 | stack, 12.4.2 |
| cylinders, 8.7.16, 22.6.2 | retrieve columns, 22.5.24 |
| lines, 8.2, 22.6.1 | from original database, 22.5.24 |
| redo, 3.6.2.10, 10.4.11, 16.5.5 | review and adjust binding site, 12.2.1.1 |
| refine, 9.8, 9.9 | rgroup, 10.35.4 |
| loops, 9.1.3 | ribbon, 3.7.1, 4.7.9, 6.1.3, 22.2.23, 22.2.34 |
| side chain, 9.9 | as a mesh object, 22.2.3 |
| sidechains, 9.1.3 | faq, 22.2.23 |
| refinement, 12.6.4 | preferences, 4.7.9 |
| region, 12.13.7 | style, 4.7.9 |
| regression, 10.36.2, 11.1, 11.5, 17.4.16, 21.13 | breaks, 6.1.3 |
| regul, 9.8 | cylinders, 6.1.3 |
| regularization, 9.8, 9.21.3 | smooth, 6.1.3 |
| relationship, 11, 17.6 | worm, 6.1.3 |
| covalent geometry, 12.2.1.3 | ribbonColorStyle, 4.7.9 |
| gpu benchmark, 13.4.1.2 | PDB, 4.5 |
| server setup, 13.4.1.1 | pdb, 4.5 |
| setup, 13.4.1 | chemical mol, 10.4.13 |
| ridge, 13.5 | spreadsheet workspace, 10.2.1 |
| right, 4.1.12 | to chemical spreadsheet, 10.4.14 |
| click, 4.1.12 | docked ligand, 16.19 |
| rigid, 10.37 | file, 4.5 |
| substructure superposition to template, 10.37.2 | hits, 16.5.7 |
| ring, 5.2.5, 10.4.3, 10.4.6, 10.5.1 | image plot, 17.4.21 |
| stacking, 5.2.5 | ligand receptor complex, 16.19 |
| rings, 10.3.28, 10.23, 10.37 | object, 4.1.9 |
| rmsd, 5.5, 5.5.2, 22.4.7, 22.4.8 | pdb, 4.5 |
| rock, 3.6.3.15, 6.10.7, 6.10.7.1, 7 | project icb, 4.1.10 |
| speed, 6.10.7.2 | sequence, 8.1.5 |
| root, 22.4.7 | slide, 7.4 |
| mean square deviation, 5.5.2 | smiles string, 10.4.15 |
| rotate, 3.6.3.15, 4.1.3, 6, 6.10.7, 6.10.7.1, 6.12, 6.12.1, 6.12.2, 7, 10.3.34, 22.8.13 | table, 17.1.21 |
| chemical, 10.3.34 | spreadsheet, 16.5.7 |
| torsion, 6.12.6.1 | tree, 17.7.3 |
| when pasting, 10.4.8 | sdf, 10.4.14 |
| easy, 3.6.3.12 | image, 3.6.1.15, 4.1.14 |
| speed, 6.10.7.2 | object, 4.1.9 |
| rotating fragment in editor, 10.4.8 | password, 3.6.1.11 |
| rotation, 6.12.1 | picture, 3.6.1.15 |
| rough surface, 22.2.37 | project, 3.6.1.8, 3.6.1.9, 3.6.1.10, 4.1.10 |
| row, 17, 17.1.22, 17.1.35, 17.1.45 | table.view, 17.1.8 |
| flag, 17.1.13 | saving, 3.6.1.8 |
| height, 17.1.7, 22.2.39 | project, 3.6.1.8 |
| mark, 17.1.13 | scaffold, 10.14 |
| hide, 10.3.8 | hopping, 16.8 |
| show, 10.3.8 | scale, 4.7.5, 22.2.38 |
| ruler, 6.8.16 | scan, 9.21.7, 12.4.1 |
| molscreen, 15.1.3 | hits, 12.4.1 |
| rundock, 22.5.16 | group, 16.7 |
| rxn, 10.4.13 | scan_pockets, 5.8 |
| safari, 22.3 | scarab, 19 |
| sali, 10.36.5 | add user, 19.5 |
| bridge, 21.3.6 | browse export data, 19.4 |
| salts, 10.3.18 | installation, 19.1 |
| sample, 9.19, 10.37 | new project, 19.6 |
| double bond cis trans, 12.2.1.3 | pages, 19.7 |
| peptide, 9.20, 9.21.12 | query, 19.3 |
| protein, 9.19, 9.21.11 | upload data, 19.2 |
| racemic centers, 12.2.1.3 | scare, 12.6.4 |
| sar, 10.28.7, 10.36, 17.4.25 | scatter, 13.1.9.2 |
| analysis, 10.36 | score, 12.4.3.1, 13.1.8, 16.4, 21.8.3, 21.8.5, 22.5.7, 22.5.8, 22.5.18 |
| table, 10.36.3 | threshold, 13.1.4 |
| save, 4.5, 6.3.11, 6.10.7.4, 8.1.5, 10.2.3, 17.4.21, 17.7.3, 22.2.33 | screen, 10.38, 21.8.4, 21.9, 21.11.1 |
| SMILES, 10.4.15 | screening, 13.1, 13.1.1, 13.1.2, 13.5, 14.4, 21.12 |
| alignment, 8.7.3 | screenshot, 6.16, 6.16.2 |
| script, 4.3, 7.6.4, 7.6.5, 22.4.19, 22.10, 22.10.1, 22.10.2, 22.10.3 | atom, 3.6.2.5 |
| sculpting, 9.18 | basic, 4.6.2 |
| sdf, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6, 10.3.35, 10.10, 10.10.3, 10.20.1, 16.10, 18.1, 19.2, 21.11.2, 22.9.3, 22.9.4 | change, 4.6.7 |
| search, 5.7, 10.10, 10.10.4, 18.2, 19.3, 22.9.6 | clear, 3.6.2.7 |
| chembl, 4.2.3 | column, 17.1.23 |
| drugbank, 4.2.8 | filter, 3.6.2.5, 4.6.8 |
| filter, 10.5.2 | graphical, 4.6.16 |
| in workspace, 3.6.2.4 | invert, 3.6.2.6, 17.1.23 |
| pdb, 4.2.1 | level, 3.6.3.3 |
| chemical, 4.2.1 | mode, 3.6.3.4 |
| ligand code, 4.2.7 | near atoms, 3.6.2.8 |
| pocketome, 4.2.2 | neighbors, 3.6.2.5, 3.6.2.8, 4.6.15, 4.6.17 |
| pubchem, 4.2.9 | object, 4.6.11 |
| surechembl, 4.2.4 | other, 4.6.19 |
| tab field, 4.2.1.3 | properties, 3.6.2.5 |
| pdb chemical, 4.2.1.1 | range, 17.1.23 |
| sequence, 4.2.1.2 | residue, 3.6.2.5 |
| tautomer, 10.5.3 | row, 17.1.23 |
| uniprot, 4.2.6 | sphere, 4.6.15 |
| in.workspace, 3.6.2.4 | spherical, 3.6.2.8 |
| secondary aliphatic amines, 10.15 | superposition, 5.4.1 |
| structure, 5.6.1, 22.2.20 | table, 4.6.19, 17.1.23 |
| structure, 3.6.4, 6.1.3, 8.3, 8.3.2 | elements, 17.1.23 |
| select, 4.6.12, 4.6.13, 17, 17.1.45, 22.4.22 | tools, 4.6.1, 4.6.2, 4.6.7, 4.6.8 |
| a tree branch, 17.7.2 | whole, 4.6.11 |
| all, 4.6.14 | workspace, 4.6.9, 4.6.17 |
| amino acid, 4.6.13 | selectioninvert, 3.6.2.6 |
| duplicates, 10.33 | selections, 4.6 |
| molecule, 4.6.12 | links, 8.3.9 |
| neighbors, 4.6.15 | selectneighbors workspace, 4.6.17 |
| graphic, 4.6.16 | organized network, 10.30 |
| object, 4.6.11 | sequence, 3.6.4, 4.2, 4.2.1.2, 4.2.5, 4.2.6, 4.3, 8, 8.1, 8.1.5, 8.2, 8.3, 8.3.7, 8.6.1, 8.6.5, 9.1.2, 10.4.17, 21.3, 21.4, 21.4.4, 22.4.12, 22.6, 22.6.1 |
| residue, 4.6.13, 4.6.18 | analysis, 8.3 |
| by number, 4.6.18 | editor, 8.5 |
| number, 4.6.18 | identity, 8.7.15 |
| tree, 17.7.2 | pattern, 4.2.1.2 |
| atom, 4.1.5, 4.6.3 | reordering, 8.7.8 |
| graphical, 4.1.5, 4.6.3 | secondary structure, 8.2, 22.6.1 |
| object, 4.1.5, 4.6.3 | similarity, 8.7.15 |
| purple.box, 3.6.3.23 | sites, 8.5 |
| residue, 4.1.5, 4.6.3 | structure, 8.3.6 |
| workspace, 4.1.5, 4.6.3 | type, 8.3.4 |
| selectall, 3.6.2.3 | DNA, 8.3.4 |
| selecting.neighbors, 4.6.16 | alignment, 8.3.5, 8.6.2, 8.6.6 |
| selection, 4.6.4, 4.6.5, 4.6.21, 6.3.4, 10.4.11, 17.4.18, 17.7.2, 17.7.4, 22.2.4, 22.2.6, 22.2.7, 22.2.8, 22.2.13, 22.2.32, 22.4.9, 22.4.10, 22.4.22, 22.5.14 | amino acid, 8.3.4 |
| clear, 3.6.2.7 | nucleotide, 8.3.4 |
| neighbors, 3.6.2.8 | protein, 8.3.4 |
| alignment, 4.6.19 | search, 8.4 |
| all, 3.6.2.3 | structure.alignment, 8.3.6, 8.6.3 |
| alter, 4.6.7 | sequences, 8, 22.2.25 |
| extract, 8.3.13 | markush, 10.35.1 |
| unique, 8.3.13 | reaction, 12.8.1 |
| server, 13.1.7.2 | smiles, 10.4.12 |
| error, 22.1.17 | accents, 3.6.3.14, 6.10.3 |
| set, 10.3.31, 22.4.21 | skin, 3.7.1, 6.1.4, 22.2.16 |
| formal charges, 10.15 | slab, 6.3.10, 6.13.1 |
| server, 22.1.17 | slice, 6.13 |
| bond type, 9.21.5 | slide, 6.10.7.4, 7.2, 7.3.1, 7.6.1, 22.2.31 |
| charges, 9.21.6 | effects, 7.5 |
| chirality, 9.21.5 | movie, 6.16.1 |
| disulfide, 9.10, 22.4.17 | file, 7.2 |
| bond, 9.21.5 | navigation, 7.3.2 |
| formal charge, 9.21.5 | show, 7.3 |
| tether, 9.21.5 | blend, 7.5 |
| types, 9.21.6 | edit, 7.4.1 |
| setAPFparams, 22.8.12 | effect, 7.5 |
| setup, 12.13.6 | smooth, 7.5 |
| ligand receptor, 16.1 | transition, 7.5 |
| shade, 8.7.7, 8.7.7.1 | slides, 6.16.1, 7, 7.1, 7.3, 22.2.30 |
| alignment, 21.4.4 | smiles, 10.4.9, 10.11, 10.20, 10.20.3, 10.20.4 |
| shading, 6.3.12 | smooth, 6.3.9.3 |
| shadow, 6.10.2 | surface, 22.2.37 |
| share model, 11.1.5 | solid, 6.3.9.3 |
| sheet, 22.2.20 | solvent.accessible.area, 22.4.19 |
| shell preferences, 4.7.10 | sort hitlist, 13.1.9.1 |
| shift, 6.8.3 | table, 3.6.10.4 |
| shine, 3.7.2, 4.7.5 | sorting, 13.1.9.1 |
| shineStyle, 4.7.3 | compounds, 17.7 |
| show, 7.3.1, 17.1.39 | sp3, 10.11.2 |
| hide column, 17.1.39 | spec, 3.7.2 |
| side, 10.3.29 | specifications, 22.1.5 |
| by side, 10.3.29 | specs, 1 |
| error, 22.1.19 | faq, 22.1.5 |
| stereo, 3.6.3.6 | speed, 6.10.7.2 |
| chain refinement, 16.14 | sphere, 22.4.11 |
| chains, 9.9 | spherical, 22.4.9, 22.4.12 |
| side-by-side, 22.1.19 | split, 10.36.1 |
| side-chain sampling, 12.13.11 | spreadsheet, 10.20.2 |
| side-chains, 12.6.1 | square, 22.4.7 |
| sigmaLevel, 5.3.6, 5.3.7 | stability, 9.14, 21.5.3, 21.5.4 |
| similarity, 10.31 | stack, 9.19, 9.21.18, 12.4, 12.13.10, 22.9.8 |
| simulation, 14, 14.1, 14.2, 14.3, 14.4, 22.9.8 | calculations, 9.21.18 |
| length, 22.5.12 | stacking, 5.2.5 |
| simulations, 22.7 | standalone hitlist, 12.4.4 |
| single, 10.4.10 | standard table, 17.1 |
| chain, 9.1.2.1 | standardize, 10.12 |
| singlet, 10.4.7 | table, 10.12 |
| sites, 5.4.6 | start, 10.10.2 |
| size, 5.2.3.1 | startup, 22.10.2 |
| sketch accents, 6.10.3 | static, 22.4.8 |
| bond, 10.4.2 | alignment, 17.1.12 |
| hardware, 3.6.3.7 | clone, 17.1.16 |
| side-by-side, 3.6.3.6 | color, 17.1.10 |
| stereohard faq, 22.1.6 | column format, 17.1.40 |
| stereoisomer, 10.20.5 | copy, 17.1.36, 17.1.37 |
| stereoisomers, 10.25 | delete, 17.1.17 |
| stick, 4.7.5 | edit, 17.1.24 |
| stl, 6.7 | filter, 17.1.43 |
| stop, 6.10.7.3 | find, 17.1.9 |
| store, 3.6.3.19, 6.10.7.4, 22.2.22 | replace, 10.3.32 |
| current view, 3.6.3.19 | font, 17.1.11 |
| faq, 22.2.22 | size, 22.2.1 |
| strain, 5.6.3, 6.12.6.1, 10.17, 10.27, 10.27.2, 12.1.10, 12.4.3.1, 16.4 | grid, 17.1.5 |
| strip, 22.4.9 | histogram, 17.4.1 |
| structure, 5.3.3, 11, 17.6, 21.3, 22.4 | insert, 17.1.26 |
| analysis, 21.3.4 | layout, 17.1.5 |
| ensemble, 9.21.14 | learning, 17.6 |
| representation, 6.1 | mark, 17.1.13 |
| smiles, 10.20.4 | row, 17.1.13 |
| structure-based, 13 | mouse, 17.1.47 |
| structures, 10, 10.1 | navigation, 17.1.4 |
| style, 4.7.5 | new column, 17.1.26 |
| substituent, 10.9.1, 10.9.2, 10.35.2, 16.5.2 | plot, 17.4 |
| substructure, 10.10.4, 10.13, 10.37.1, 10.37.2, 12.7, 22.8.1, 22.9.5 | print, 17.1.19 |
| template, 16.12.3 | rename, 17.1.15 |
| alerts, 10.13 | rightclick, 17.1.14 |
| sulfur, 9.10 | row height, 22.2.39 |
| superimpose, 3.6.8, 5.4.2, 5.4.6, 10.37.4, 21.3.3, 22.2.5, 22.4.6, 22.4.7, 22.4.8 | save, 17.1.3 |
| 3D, 5.4.3 | selection, 17.1.3 |
| Calpha, 5.4.3 | search, 17.1.9 |
| arrange.grid, 5.4.5 | select, 17.1.23 |
| backbone, 5.4.3 | setup, 17.1.18 |
| heavy atoms, 5.4.3 | sort, 17.1.42 |
| multiple, 5.4.4 | split fragments, 10.3.33 |
| superposition, 10.37, 10.37.1, 10.37.2, 10.37.5, 10.37.6, 21.3.3, 21.8.1 | view, 17.1.5 |
| surface, 3.7.1, 4.7.5, 5.2.1, 5.2.2, 6.1.6, 6.3, 6.3.3, 6.3.4, 22.2.16, 22.2.37, 22.4.19 | save, 17.1.8 |
| area, 5.5 | zoom translate, 10.3.30 |
| area, 5.5.5 | action, 17.1.47 |
| surfaces, 5.2, 6.3.1, 6.3.2, 6.10.5 | alignment, 17.1.12 |
| surrounding, 22.4.11 | append, 17.1.43 |
| swissprot, 8.1, 8.5 | clone, 17.1.16 |
| sxstrace, 22.1.19 | color, 17.1.10 |
| symmetric oligomer, 9.1.3 | column, 10.3.4, 17.1.26, 17.1.32, 17.1.39 |
| symmetry, 5.3.1, 5.3.3, 21.3.8, 21.3.9 | columns, 10.3.8 |
| synthesize, 10.11.5 | compare, 10.3.22 |
| synthetic feasibility, 10.11.5 | copy, 10.3.6 |
| system preferences, 4.7.11 | cursor, 17.1.47 |
| tab, 17.1.2, 17.1.21 | delete, 17.1.14, 17.1.17 |
| pdb, 3.7.4 | display, 22.10.4 |
| table, 4.3, 10.1.3, 10.3.24, 10.3.25, 10.3.28, 10.3.30, 10.3.31, 10.3.34, 10.3.35, 10.20.2, 10.23, 16.10, 17, 17.1.6, 17.1.35, 17.1.40, 17.1.45, 17.4, 17.4.1, 17.4.4, 17.4.9, 17.4.11, 17.4.13, 17.4.14, 17.4.15, 17.4.16, 17.4.17, 17.4.18, 17.4.20, 17.7.1, 22.4.19, 22.8.4, 22.8.5, 22.8.7, 22.8.8 | double.click, 17.1.47 |
| excel, 10.3.10, 17.1.20 | search, 10.5.4 |
| filter, 10.3.12, 17.1.43 | texture, 3.7.6 |
| find-replace, 10.3.13 | thoroughness, 10.23, 10.37, 22.5.12 |
| to screen, 17.1.4 | three, 10.3.24, 22.8.6 |
| font, 17.1.11 | threshold, 4.7.5 |
| foreground, 22.10.4 | tier, 4.1.13 |
| grid lines, 17.1.4 | time, 22.5.11 |
| hide, 17.1.39 | machine, 22.1.15 |
| hyperlink, 10.3.15 | tissue, 4.2.10 |
| insert, 17.1.33 | racemic, 10.20 |
| join, 3.6.10.5 | tools 3D, 3.6.6 |
| label, 10.3.14 | analysis, 3.6.7 |
| landscape, 17.1.18 | append rows, 3.6.10.7 |
| mark, 10.3.14 | extras, 3.6.9 |
| merge, 3.6.10.5, 10.3.23, 10.32 | plot function, 3.6.9.1 |
| mouse, 17.1.47 | superimpose, 3.6.8 |
| name, 17.1.15 | table, 3.6.10 |
| new, 17.1.1 | Learn, 3.6.10.1 |
| options, 17.1.14 | clustering, 3.6.10.3 |
| orientation, 17.1.18 | merge, 3.6.10.5 |
| portrait, 17.1.18 | predict, 3.6.10.2 |
| print, 10.3.11, 17.1.4, 17.1.19 | tooltip, 17.4.26 |
| read, 17.1.2 | balloons, 17.4.26 |
| rename, 17.1.15 | torsion, 6.12.6, 6.12.6.1, 9.21.7, 10.17, 16.5.4, 22.4.16 |
| right click, 17.1.14 | analysis, 10.16 |
| row, 17.1.33 | angles, 6.12, 6.12.6 |
| rows, 3.6.10.7 | free strain, 10.17 |
| save, 10.3.9, 17.1.3, 17.1.4, 17.1.21 | scan, 9.21.7 |
| scale, 17.1.18 | toxscore, 10.11.3 |
| scroll, 17.1.4 | trace, 6.1.10 |
| sdf, 10.3.9 | transition.blend, 22.2.31 |
| select, 17.1.23 | transitions, 7, 22.2.30 |
| setup, 17.1.18 | translate, 4.1.3, 6, 6.12, 10.3.30 |
| sort, 3.6.10.4, 10.3.5, 17.1.42 | translation, 6.12.3, 8.3.3, 17.4.17 |
| standard, 17.1 | transparent, 6.3.9.3 |
| view, 10.3.29 | background, 6.15.3 |
| width, 17.1.4 | ribbon, 22.2.3 |
| tables, 10.31, 17 | surface, 22.2.37 |
| tag, 4.6.21, 16.5.7, 17.1.46 | tree, 8.7.8, 10.28.7, 17.7.2, 17.7.3, 17.7.4 |
| tags, 4.6.21 | branch swapping, 8.7.8 |
| tautomer, 10.24, 22.4.15 | distance, 10.28.3 |
| tautomers, 10.24 | edit, 10.28.4 |
| temperature, 5.6.4 | reorder, 10.28.3 |
| template, 9.1.2, 10.4.6, 10.37 | triplet, 10.4.7 |
| docking, 22.5.3 | trouble shooting, 22.1.11 |
| templates, 10.4.6 | trouble-shooting, 22.1.12 |
| terminal, 10.3.28 | truncating a mesh object, 22.2.15 |
| font size, 22.2.1 | crash qlock, 22.1.13 |
| tether, 12.5, 16.12.1, 16.12.2 | tsv, 17.1.21 |
| text, 4.7.7, 7.6, 7.6.1, 7.6.7, 10.3.28, 10.10.4, 17.4.24, 22.9.6 | tut analyze alternative orientations, 21.3.11 |
| symmetry, 21.3.9 | color background, 3.6.3.18 |
| multiple receptor, 21.12.1 | dock results, 12.4 |
| tut3, 21.5 | fog, 3.6.3.5 |
| tut3e, 21.3.12 | macroshape, 3.6.3.22 |
| tut5a, 21.9.1 | menu, 3.6.3 |
| tut5b, 21.9.2 | mesh clip, 6.13.1 |
| tut5c, 21.11.1 | perspective, 3.6.3.9 |
| tut5e, 21.11.2 | selection level, 3.6.3.3 |
| tutorial 2D pharmacophore, 21.6.6 | mode, 3.6.3.4 |
| 3D pharmacophore, 21.6.5 | shadow, 3.6.3.13 |
| chemical clustering, 21.6.3 | sketch accents, 3.6.3.14 |
| search, 21.6.2 | slide show, 7.3.1 |
| molecular documents, 21.2 | tools, 3.6.3 |
| sequence alignment, 21.4 | tree, 17.7.4 |
| link, 21.4.2 | undisplay all, 3.6.3.1 |
| load sequence, 21.4.1 | stach, 9.21.15 |
| sequence conservation, 21.4.3 | virtual, 13.1, 13.1.1, 13.1.2, 21.9, 21.11.1 |
| tutorials, 21 | ligand screening, 15 |
| two, 10.3.24, 22.8.6 | screen, 13.3, 13.4 |
| ubuntu, 22.1.18 | screening, 13, 13.2 |
| ultra large library, 13.5 | examples, 21.11 |
| unclip, 6.3.10, 6.13.1 | virus, 5.3.3 |
| undisplay, 4.1.4, 6.1.7, 22.2.10, 22.2.32 | visualize, 10.30 |
| box shade font, 8.7.7.1 | apf fields, 16.3.11 |
| undisplay-all, 3.6.3.1 | chemical space, 10.30 |
| origin, 6.8.12 | ligand strain, 16.3.10 |
| undo, 3.6.2.9, 4.7, 10.4.11, 16.5.5 | vls, 12.6, 12.6.3, 13, 13.1, 13.1.6, 13.1.7.2, 13.1.9.4, 13.3, 14.4, 21.11.2, 22.5.7, 22.5.8, 22.5.24 |
| redo, 16.5.5 | analysis, 13.1.9.4 |
| uniprot, 4.2.6, 8.5 | display, 13.1.9.3 |
| unique, 10.3.28, 10.33 | command line, 13.1.7.2 |
| unit, 5.3.3 | getting started, 13.1.2 |
| units, 22.5.1 | histogram scatter plot, 13.1.9.2 |
| unix, 22.10.2 | introduction, 13.1.1 |
| unsatisfied hydrogen bonds, 16.3.8 | preferences, 13.1.4 |
| unusual peptide, 4.3 | results, 13.1.8 |
| upload, 19.2 | run, 13.1.6 |
| use activeicm, 7.12 | score, 12.1.9 |
| user, 10.10.5, 19.5 | visualization, 13.1.11 |
| defined groups, 16.5.3 | results, 13.1.8 |
| modifiers, 16.5.3 | volume, 10.4.9 |
| user-defined groups, 10.4.5 | water, 9.21.17, 12.1.8 |
| van der waal, 6.8.15 | waters, 9.21.17 |
| variable, 4.7.7, 22.2.8 | wavefront, 3.7.6, 6.3.11, 6.7 |
| verbose, 10.23 | weak, 22.4.20 |
| large sdf files, 10.1.2 | web, 21.2 |
| vicinity, 10.23 | browser, 3.6.1.12 |
| video, 2, 6.16, 6.16.1, 6.16.2 | weight, 10.11, 22.8.7, 22.8.10 |
| view, 3.6.3.19, 7.3.1, 10.3.28, 22.2.22, 22.9.8 | weighted, 17.7.1 |
| animate view, 3.6.3.15 | width, 17.1.22 |
| center, 3.6.3.20 | window, 4.1.13 |
| wire, 3.7.1, 4.7.5, 6.1.1, 22.2.4, 22.2.21 | |
| wireBondSeparation, 4.7.1 | |
| working directory, 22.5.23 | |
| workspace, 4.1.4, 5.1.3.1, 10.7.2 | |
| panel, 4.1.4 | |
| selection, 4.6.9 | |
| navigation, 4.6.10 | |
| write, 4.1.14, 4.5, 17.4.21, 22.9.4, 22.9.7 | |
| alignment, 8.7.3 | |
| excel, 10.2.3 | |
| image, 3.6.1.15, 22.1.20 | |
| images, 6.15 | |
| pdb, 4.5 | |
| image, 3.6.1.15 | |
| object, 4.1.9 | |
| picture, 3.6.1.15 | |
| project, 3.6.1.8, 4.1.10 | |
| table, 17.1.3 | |
| writing a pdb file, 22.4.3 | |
| ray, 3.6.5 | |
| xi, 6.8.5, 22.2.18 | |
| xls, 10.2.3 | |
| xlsx, 10.2.3 | |
| xml, 19.2 | |
| xstick, 6.1.2, 22.2.21 | |
| xyz, 22.2.10 | |
| youtube, 2 | |
| zoom, 4.1.3, 6, 6.12, 6.12.4, 10.3.30, 17.4.17 | |
|