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[ Download | Graphical Display | Selections | Convert, Hydrogens and Pockets | Effects | Labels and Annotations | Images | Superimpose | Distances and Angles ]
| Available in the following product(s): ICM-Browser | ICM-Browser-Pro | ICM-Chemist | ICM-Pro |
| For instructions on how to use ICM-Browser to make fully-interactive 3D slides and publish them in PowerPoint and the web please see the ActiveICM User Guide. ActiveICM is a free plugin for Windows PowerPoint and web browsers. Other related tutorials include: |
3.1.1 Download and Install ICM-Browser |
| Getting Started: Download and Install ICM-Browser and ActiveICM. | ||
| Download ICM-Browser Distribution. | Download | video |
| Install ICM-Browser Instructions. | Windows Linux Mac | |
| Download ActiveICM Distribution. | Download | video |
| Install ActiveICM. | Windows Linux Mac |
3.1.2 How to use the Graphical Display |
| How to use the Graphical Display | ||
| How to search the PDB. | HTML GUI Manual | video |
| How to Move a Structure in the Graphical Display. | HTML GUI Manual | video |
| How to use the Graphics window controls. | HTML GUI Manual | |
| How to use the ICM Workspace Panel | HTML GUI Manual | video |
| How to Display a Molecule. | HTML GUI Manual | video |
| How to Change Protein Representation. | HTML GUI Manual | video |
| How to Change Ribbon Representation. | HTML GUI Manual | video |
| How to color wire or xstick carbon atoms. | HTML GUI Manual | video |
| How to Display the Residues Surrounding the Ligand Binding Pocket. | HTML GUI Manual | video |
| How to remove chain breaks (dotted lines). | HTML GUI Manual | video |
| How to Color. | HTML GUI Manual | video |
| How to Change the Color of Molecule Representations. | HTML GUI Manual | video |
| How to Change the Background Color. | HTML GUI Manual | video |
| How to Display a Binding Pocket Surface | HTML GUI Manual | video |
| How to (Un)Display Hydrogens. | HTML GUI Manual | video |
| How to Save an ICM Object. | HTML GUI Manual | video |
| How to Save an ICM Project File. | HTML GUI Manual | video |
| How to Drag and Drop. | HTML GUI Manual | |
| How to: Right Click Options. | HTML GUI Manual | |
| How to Move Windows. | HTML GUI Manual | video |
| How to Arrange Windows | HTML GUI Manual | video |
3.1.3 How to make Graphical Selections |
| How to Make Selections. | HTML GUI Manual | |
| How to Select an Object | HTML GUI Manual | video |
| How to Select a Molecule | HTML GUI Manual | video |
| How to Select Residues | HTML GUI Manual | video |
| How to Select Atoms | HTML GUI Manual | video |
| How to Make a Spherical Selection. | HTML GUI Manual | video |
| How to Invert a Selection. | HTML GUI Manual | video |
| How to Remove a Selection. | HTML GUI Manual | video |
| How to Change the Selection Level and Mode. | HTML GUI Manual | video |
| How to Check What is Selected. | HTML GUI Manual |
3.1.4 How to Convert Proteins, Display Hydrogens and Ligand Binding Pocket. |
| Convert Protein, Display Hydrogens and Ligand Binding Pocket. | ||
| How to Convert a PDB Structure into an ICM Object. | HTML GUI Manual | video |
| How to Display Ligand Binding Pocket. | HTML GUI Manual | video |
| How to Display Hydrogen Bonds. | HTML GUI Manual | video |
3.1.5 How to change Graphics Effects |
| How to change Graphics Effects | ||
| How to display the FOG effect. | HTML GUI Manual | video |
| How to display side-by-side stereo. | HTML GUI Manual | |
| How to display Anaglyph stereo. | HTML GUI Manual | |
| How to toggle full screen mode. | HTML GUI Manual | video |
| How to adjust perspective. | HTML GUI Manual | |
| How to change the lighting. | HTML GUI Manual | video |
| How to display sketch accents. | HTML GUI Manual | video |
| How to display elegant ribbon and ligand sketch. | HTML GUI Manual | video |
3.1.6 How to add Labels and Annotations |
| How to add Labels and Annotations | ||
| How to Label Residues. | HTML GUI Manual | video |
| How to Label Atoms. | HTML GUI Manual | video |
| How to Label Variables. | HTML GUI Manual | video |
| How to Display and Undisplay Sites. | HTML GUI Manual | |
| How to Make and Display Sites (Annotations). | HTML GUI Manual | |
| How to Make and Display 2D and 3D Labels. | HTML GUI Manual | video |
3.1.7 How to Make High Quality Publication Images |
| How to Make High Quality Publication Images | ||
| How to Toggle High Quality Display | HTML GUI Manual | video |
| How to Toggle Antialiasing. | HTML GUI Manual | video |
| How to Copy Image to ClipBoard | HTML GUI Manual | video |
| How to Write an Image. | HTML GUI Manual | video |
| How to Use the Advanced Write Image Options. | HTML GUI Manual | video |
| How to Add an Image to the ICM Photo Album. | HTML GUI Manual | video |
3.1.8 How to Superimpose Protein Structures. |
| How to Superimpose Protein Structures. | ||
| How to Superimpose Two or More Protein Structures. | HTML GUI Manual | video |
3.1.9 How to Measure Distances and Angles. |
| How to Measure Distances and Angles. | ||
| How to Measure Distances Between Two Atoms. | HTML GUI Manual | video |
| How to Measure Distances From One Atom to Many. | HTML GUI Manual | video |
| How to Show Corresponding Distances in Two Objects. | HTML GUI Manual | video |
| How to Display the Ruler Bar. | HTML GUI Manual | video |
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