This option aligns a set of sketches in a chemical table in the same orientation according to a defined scaffold or color by a common substructure.

• Read in a chemical table.
• Chemistry/Align-Color by 2D Scaffold
• Choose a loaded molecular table from the drop-down arrow.
• You can allow ICM to auto detect the common scaffold or draw a new scaffold using the molecular editor or choose the scaffold from a table (Index = row number).