May 17 2013 Feedback.
Contents
 
Introduction
How Tos & Videos
Getting Started
Protein Structure
Molecular Graphics
Slides and Documents
ActiveICM
Movie Making
Sequences & Alignments
Protein Structure Analysis
Protein Superposition
Crystallographic Analysis
Homology & Modeling
3D Predict
Molecular Mechanics
Cheminformatics
Chemistry Menu
 Calculate Properties
 Standardize Table
 Annotate
 Align/Color by 2D Scaffold
 Formal Charges
 Convert
 Build Prediction Model
 Predict
 Generate 3D Conformers
 Generate Tautomers
 Generate Stereoisomers
 Ligand Energetics
 Cluster Set
  Chemical clustering
  Center
  Re-order and Distance
  Edit tree
 PCA Analysis
 Compare Two Sets
 Merge Two Sets
 Select Duplicates
 Combinatorial Chemistry
 Chemical Superposition
 APF Superposition
 APF Tools
Docking
3D Ligand Editor
Tables
Local Databases
KNIME
Tutorials
FAQs
 
Index
PrevICM User's Guide
17.13 Cluster Set
Next

[ Chemical clustering | Center | Re-order and Distance | Edit tree ]

Clustering is described in more detail in the Tables Clustering section of this manual. To undertake chemical clustering choose:

  • Chemistry/Cluster Set

17.13.1 How to perform chemical clustering.


17.13.2 How to select representative centers from a tree.


17.13.3 How to reorder branches and change the distance of trees.


17.13.4 How to edit the tree - labels, spacing and coloring.



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