May 8 2008
Contents
 
Introduction
Overview - RECOMMENDED READING FOR NEW ICM USERS
File Menu
Graphics Move Tools
Display Tab
Light Tab
Labels Tab
PDB Search Tab
Meshes Tab
View Menu
Selections
Tables
Sequences
Bioinfo Menu
Tools Menu - Xray
Tools Menu - 3D Predict
Tools Menu - Analysis
Tools Menu - Superimpose
Homology and Modelling
Working with Chemistry Tools
Chemsitry Menu
Docking
Animations, Slides, & Documents
 Animations
 Slides
 Documents
Movie Making
Frequently Asked Questions
Tutorial - Graphical Display
Molecular Document
Tutorial - Working with PDB Protein Structures
Tutorial - Working with Sequence Alignments
Tutorial - Ligand Binding Pocket Analysis
Tutorial - Homology and Modeling Tools
Tutorial - Crystallographic Analysis Tools
Tutorial - Working with Chemical Tables
Tutorial - Working with the Molecular Editor
Tutorial - Chemical Searching
Tutorial - Docking and Virtual Ligand Screening
 
Index
PrevICM User's Guide
23 Making Molecular Animations, Slides, and Documents
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Note: Click Next (top right hand corner) to navigate through this chapter or use the links below. Headings are listed on the left hand side (web version) or by clicking the Contents button on the left-hand-side of the help window in the graphical user interface.

Here you will find a description of the tools to produce and exchange interactive three-dimensional (3D) and two-dimensional (2D) information consisting of multiple interactive views and animations of molecular structures and objects in conjunction with related hyperlinked text, chemical, biological sequence, alignment and data views. These tools enable the user to produce small, easily transferable and quickly downloadable files. The files can be used for Molecular Presentations and Documents.

Highlights of these tools include:

  • Construct molecular animations - including rock, rotation, and transition from one point to another.
  • Fully-interruptable animations and tranistions allow the user to stop an animation and alter the display. For example, stop and zoom into a particular region of a protein structure.
  • Link hypertext to action.
  • Construct fully-interactive molecular documents linking text and the graphical display.
  • Build molecular slides incorporating static representations, animations and annotations.

For examples of ICM Molecular Documents please see the structures solved by the Structural Genomics Consortium in Oxford, UK http://www.sgc.ox.ac.uk/


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