|
May 8 2008
|
Index
| 2D, 2.16.5, 2.16.6, 7.1, 20.2.2, 20.2.7, 21.5, 21.6, 21.7, 21.13, 26.8.4 | displayLineLabels, 3.9.7 |
| 3d labels, 26.8.4 | displayMapBox, 3.9.3 |
| depiction, 21.7 | distance Label Drag, 3.9.1 |
| 3D, 2.16.5, 2.16.6, 7.1, 20.2.2, 20.2.7, 20.2.10, 21.7, 26.8.4 | dnaBallRadius, 3.9.9 |
| browse, 2.16.13 | dnaRibbonRatio, 3.9.9 |
| graphics.main, 2.12 | dnaRibbonWidth, 3.9.9 |
| 3Dlabel, 3.1.12 | dnaRibbonWorm, 3.9.9 |
| 3d, 3.1.12 | dnaStickRadius, 3.9.9 |
| 4D, 36.6 | dnaWormRadius, 3.9.9 |
| 64, 25.1.2 | font Scale, 3.9.7 |
| APF, 21.22.5 | fontColor, 3.9.7 |
| template, 21.22.4 | fontLineSpacing, 3.9.7 |
| Area, 25.3.27 | grobLineWidth, 3.9.3 |
| Atom Single Style, 3.9.3 | hbond Ball Period, 3.9.1 |
| Bad Groups, 25.6.12, 25.6.15 | Style, 3.9.1 |
| Beep, 3.9.11 | hbondAngleSharpness, 3.9.1 |
| Binding pocket, 2.13.8 | hbondMinStrength, 3.9.1 |
| Blast, 25.3.26 | hbondStyle, 3.9.1 |
| BlastDB Directory, 3.9.2 | hbondWidth, 3.9.1 |
| alphas, 5.5.2 | hetatmZoom, 3.9.1 |
| CPK, 5, 5.2 | hydrogenDisplay, 3.9.1 |
| Clash Threshold, 3.9.10 | light, 3.9.3 |
| DNA, 3.1.4, 13, 14.3 | lightPosition, 3.9.3 |
| Display, 25.3.27 | mapLineWidth, 3.9.3 |
| Dock Directory, 3.9.2 | occupancy Radius Ratio, 3.9.3 |
| Docking, 25.3.27 | occupancyDisplay, 3.9.3 |
| Editor, 3.9.2 | quality, 3.9.3 |
| FILTER.Z, 3.9.2 | rainbow Bar Style, 3.9.4 |
| gz, 3.9.2 | resLabelDrag, 3.9.7 |
| uue, 3.9.2 | resize Keep Scale, 3.9.3 |
| FTP.createFile, 3.9.11 | ribbonRatio, 3.9.9 |
| keep File, 3.9.11 | ribbonWidth, 3.9.9 |
| proxy, 3.9.11 | ribbonWorm, 3.9.9 |
| Filter.zip, 3.9.2 | rocking, 3.9.4 |
| Force Auto Bond Typing, 3.9.11 | Range, 3.9.4 |
| Formula, 25.6.12, 25.6.15 | Speed, 3.9.4 |
| Frequently Asked Questions, 25 | selectionStyle, 3.9.3 |
| GIF, 3.8, 24, 24.1 | site Label Drag, 3.9.7 |
| GRAPHIC.store Display, 3.9.3 | Shift, 3.9.7 |
| NtoC Rainbow, 3.9.4 | siteArrow, 3.9.7 |
| alignment Rainbow, 3.9.4 | stereoMode, 3.9.3 |
| atomLabelShift, 3.9.7 | stickRadius, 3.9.1 |
| ballStickRatio, 3.9.1 | surfaceDotDensity, 3.9.3 |
| center Follows Clipping, 3.9.3 | surfaceDotSize, 3.9.3 |
| clash Style, 3.9.3 | surfaceProbeRadius, 3.9.3 |
| clashWidth, 3.9.3 | transparency, 3.9.3 |
| clip Grobs, 3.9.3 | wire Width, 3.9.1 |
| Skin, 3.9.3 | wormRadius, 3.9.9 |
| Static, 3.9.3 | xstick Backbone Ratio, 3.9.1 |
| discrete Rainbow, 3.9.4 | Hydrogen Ratio, 3.9.1 |
| Vw Ratio, 3.9.1 | LogP, 12.5 |
| GROB.arrowRadius, 3.9.3 | LogS, 12.5 |
| atomSphereRadius, 3.9.3 | MOL, 12.2, 20, 20.1.1, 20.2.1, 20.2.2, 20.2.3, 20.2.4, 20.2.5, 22.4.3 |
| contourSigmaIncrement, 3.9.3 | MOL2, 20.1.1, 22.4.3 |
| relArrow Size, 3.9.3 | MOVIE.frame Grab Mode, 3.9.4 |
| relArrowHead, 3.9.3 | MW, 33.2, 33.4, 33.5, 33.6 |
| GUI, 1 | Map Atom Margin, 3.9.10 |
| Overview, 2 | Sigma Level, 3.9.10 |
| auto Save, 3.9.4 | File Size Mb, 3.9.11 |
| Interval, 3.9.4 | Max_Fused_Rings, 21.1 |
| enumberation Memory Limit, 3.9.11 | Mnconf, 3.9.10 |
| max Nof Recent Files, 3.9.11 | MolIPSA, 2.16.6, 25.6.12, 25.6.15 |
| Sequence Length, 3.9.4 | MolLogP, 2.16.6, 25.6.12, 25.6.15 |
| splash Screen Delay, 3.9.11 | MolLogS, 2.16.6, 25.6.12, 25.6.15 |
| Image, 3.9.11 | MolPSA, 21.1, 33.2, 33.4, 33.5, 33.6 |
| table Row Mark Colors, 3.9.4 | MolVol, 21.1 |
| workspace Folder Style, 3.9.4 | Molcart, 21.23.2 |
| workspaceTabStyle, 3.9.4 | MoldHf, 2.16.6, 21.1, 25.6.12, 25.6.15 |
| HBA, 2.16.6, 25.6.12, 25.6.15 | Molecular Document, 27 |
| HBD, 2.16.6, 25.6.12, 25.6.15 | Movie.fade Nof Frames, 3.9.4 |
| HTTP.proxy, 3.9.11 | quality, 3.9.4 |
| support Cookies, 3.9.11 | Auto, 3.9.4 |
| user Agent, 3.9.11 | NCBI, 25.3.26 |
| Html, 8.6.2 | NMR, 8.1 |
| Http Read Style, 3.9.11 | Nof_Atoms, 21.1 |
| Hydrogen.bond, 3.9.5 | Nof_Chirals, 21.1 |
| ICM, 1 | Nof_HBA, 21.1 |
| graphics crash, 25.9.1 | Nof_HBD, 21.1 |
| IMAGE.bondLength2D, 3.9.6 | Nof_Rings, 21.1 |
| color, 3.9.6 | Nof_RotBonds, 21.1 |
| compress, 3.9.6 | Nvidia GL failutre, 25.9.1 |
| gammaCorrection, 3.9.6 | ODA, 25.3.27 |
| generateAlpha, 3.9.6 | Optimal, 25.3.27 |
| lineWidth, 3.9.6 | Output Directory, 3.9.2 |
| lineWidth2D, 3.9.6 | PBS, 22.4.6 |
| orientation, 3.9.6 | PCA, 12.5.3 |
| paper Size, 3.9.6 | PDB, 8.2, 8.6.1, 8.6.2, 8.7, 13.1, 15.3 |
| previewResolution, 3.9.6 | Directory, 3.9.2 |
| previewer, 3.9.6 | Style, 3.9.2 |
| print, 3.9.6 | convert, 8.7, 28.2 |
| printerDPI, 3.9.6 | pattern, 8.4 |
| scale, 3.9.6 | query, 8.3, 8.4 |
| stereoAngle, 3.9.6 | search, 8.1, 8.3, 8.4, 8.5, 8.6, 28.1 |
| stereoBase, 3.9.6 | sensitive search, 8.5 |
| stereoText, 3.9.6 | sequence, 8.4 |
| ISIS, 25.6.8 | similarity, 8.5 |
| Icm Prompt, 3.9.10 | PFAM, 3.4 |
| Inx Directory, 3.9.2 | PLOT.Yratio, 3.9.8 |
| JPEG, 3.8 | color, 3.9.8 |
| Log Directory, 3.9.2 | date, 3.9.8 |
| font, 3.9.8 | phone, 3.9.11 |
| fontSize, 3.9.8 | VLS, 22.4, 22.4.1, 22.4.2, 22.4.6, 22.4.10 |
| labelFont, 3.9.8 | preferences, 22.4.4 |
| lineWidth, 3.9.8 | Var Label Style, 3.9.7 |
| logo, 3.9.8 | Volume, 2.16.6, 25.6.12, 25.6.15 |
| markSize, 3.9.8 | Water Radius, 3.9.10 |
| orientation, 3.9.8 | Wire Style, 3.9.1 |
| paper Size, 3.9.8 | X-ray, 8.1, 22.1.1 |
| previewer, 3.9.8 | XPDB Directory, 3.9.2 |
| rainbowStyle, 3.9.8 | Xstick, 5, 5.2 |
| seriesLabels, 3.9.8 | a-bright, 6 |
| PLS, 12.5.1 | acceptor, 20.3.5 |
| PNG, 2.13.7, 3.8, 24, 24.1 | acid, 3.1.4 |
| Projects Directory, 3.9.2 | activityy, 12.5 |
| Prosite Dat, 3.9.2 | adding fragment, 20.3.4 |
| Protein, 25.3.27 | in editor, 20.3.4 |
| Viewer, 3.9.2 | administration, 21.27.4 |
| QSAR, 12.5, 12.5.1 | advanced alignment selectioection, 13.2.18 |
| R, 21.20, 21.26 | alias, 20.3.3 |
| R-group, 21.25 | align, 2.13.2, 13.2.1, 21.13, 29.1 |
| RMSD, 5.8 | color 2D scaffold, 21.13 |
| Ramachandran Plot, 17.8 | dna protein, 13.2.3 |
| Real Format, 3.9.10 | multiple sequences, 13.2.4 |
| Receptor Setup, 22.1.5 | two sequences, 13.2.2 |
| Label Shift, 3.9.7 | DNA to protein, 13.2.3, 14.7 |
| Style, 3.9.7 | annotate, 29.4 |
| RotB, 2.16.6, 25.6.12, 25.6.15 | box, 29.4 |
| SAR, 12.5 | multiple, 13.2.4, 29.3 |
| SCORE, 25.5.7, 25.5.18 | sequence, 13.2, 13.2.5 |
| SDF, 12.2, 20, 20.1.1, 20.2.2, 20.2.3, 20.2.4, 20.2.5, 22.4.3 | shade, 29.4 |
| SEQUENCE.site Colors, 3.9.4 | two sequences, 13.2.2, 14.5 |
| SITE.label Style, 3.9.7 | alignment, 2.14.5, 25.4.12, 30, 30.2 |
| labelOffset, 3.9.7 | comment, 13.2.9 |
| wrap Comment, 3.9.7 | editing, 13.2.7 |
| SLIDE.ignore Background Color, 3.9.4 | editor, 13.2.6 |
| Fog, 3.9.4 | font size, 25.3.1 |
| SMILES, 20.4.2 | format, 13.2.14 |
| SVM, 12.5.1 | gaps, 13.2.14 |
| kernels, 12.5.3 | introduction, 13.2.1 |
| Select Min Grad, 3.9.10 | reorder, 14.12 |
| Show Res Code In Selection, 3.9.7 | search, 13.2.15 |
| Smiles, 2.16.6, 25.6.12, 25.6.15 | selection, 13.2.16 |
| Swissprot, 3.4 | view options, 13.2.13 |
| Dat, 3.9.2 | box, 13.2.12 |
| Temp Directory, 3.9.2 | color, 13.2.11, 13.2.12 |
| UNIX, 22.4.6 | comment, 13.2.9 |
| USER.email, 3.9.11 | consensus, 13.2.11, 13.2.18 |
| friends, 3.9.11 | cut, 14.11 |
| full Name, 3.9.11 | delete, 13.2.8 |
| organization, 3.9.11 | display title, 13.2.13 |
| extract, 14.10 | atom, 3.9.5, 20.2.7, 25.3.4, 25.3.5, 25.3.8, 25.3.15, 25.3.16, 25.4.10, 26.2.1, 26.3, 26.8, 26.8.2 |
| gaps, 13.2.14 | label, 26.8.2 |
| linked, 31.1.1 | charge, 25.4.21 |
| multiple, 14.8 | atomLabelStyle, 3.9.7 |
| options, 13.2.13 | attachment, 20.3.2, 21.23.1 |
| print, 13.2.8 | point, 21.19 |
| rename, 13.2.13 | autofit, 22.5 |
| reorder, 14.12 | ave, 12.6 |
| ruler, 13.2.13 | avi, 24, 24.1, 24.2 |
| save, 13.2.8 | axes, 12.3.7 |
| search, 13.2.15 | axis, 12.3.4 |
| selection, 13.2.16, 13.2.17, 13.2.18 | b-factor, 16.3, 22.1.1, 28.4 |
| sequence offset, 13.2.13 | backbone, 25.3.12 |
| shade, 13.2.12 | background, 5.4.1, 26.7.1 |
| table, 13.2.13 | color shortcut, 25.3.2 |
| view, 13.2.13 | jobs, 2.12 |
| alignments, 2.14, 13.2, 29 | bad, 21.1 |
| main, 2.12 | groups, 2.16.6 |
| alpha, 6 | groups, 20.3.5 |
| channel, 3.9.6 | ball, 3.9.5 |
| ambient, 6 | and stick, 5, 5.2 |
| amino, 3.1.4 | bank, 8.1 |
| analysis, 14 | basic alignment selection, 13.2.17 |
| angle, 4.2.6, 5.5.4, 17.6, 17.7, 25.3.17, 25.4.16 | basicsel, 11.1.2 |
| angstrom, 2.15.9, 25.4.7 | batch, 22.1.10, 22.4.6, 22.6.8 |
| animate, 10.14 | begin docking simulation, 22.1.8 |
| view, 10.14 | best, 20.2.13 |
| animation, 23.1, 23.1.1, 23.1.2, 23.1.3, 23.1.4 | binding, 2.15.7, 25.3.13, 25.5.2, 25.5.11 |
| store, 23.1.4 | pocket, 30 |
| animations, 23 | bioinfo align dna protein, 14.7 |
| annotate, 26.8.3 | multiple, 14.8 |
| annotation, 26, 26.8, 26.8.3 | two sequences, 14.5 |
| antialias, 3.8, 10.10 | links, 14.9 |
| lines, 10.16 | secondary structure, 14.2 |
| lines, 10.16 | translation, 14.3 |
| apf super, 21.22.4 | biological, 15.3 |
| alignment, 21.22.5 | biomolecule, 15, 15.3, 32, 32.2 |
| applying prediction models, 12.5.2 | bit, 25.1.2 |
| area, 16.4, 17.2, 22.6, 22.6.1, 22.6.2 | blast, 14.14 |
| aromatic, 20.2.7 | boat, 25.5.20 |
| arrange, 2.13.5 | bond, 2.15.3, 2.15.8, 2.16.6, 19.7, 20.3.6, 25.4.1, 25.6.12, 25.6.15, 30.3 |
| window, 2.13.5 | covalent, 25.4.2 |
| arrow, 3.1.5, 3.1.9, 26.8.3 | type, 2.15.4, 2.15.5, 21.8.1, 21.8.2, 21.8.3 |
| graph, 25.3.8 | bonding, 5.3 |
| as_graph, 25.3.8 | preferences, 3.9.1 |
| asn, 8.7.1 | box, 3.1.5, 3.1.10, 3.9.7, 25.5.10 |
| assign, 5.2.3 | bpmc, 31.2 |
| 2D coordinates, 21.7 | branch, 2.16.12 |
| helices, 16.1 | browse, 20.2.10, 22.1.12 |
| strands, 16.1 | mode, 20.2.10 |
| build, 2.16.1, 23.1.1 | clustering, 21.14 |
| homology model, 19.2 | convert, 2.15.3, 2.15.4, 2.15.5, 21.8, 21.8.1, 21.8.2, 21.8.3, 25.4.1 |
| bye, 3.12 | display, 33.1, 33.2, 33.3, 33.4, 33.5, 33.6 |
| calculate, 2.15.9, 25.5.2 | draw, 20.3.1, 34.1 |
| properties, 21.1 | edit, 20.3.8, 34.2 |
| startup, 25.8.2 | editor, 20.4, 20.4.1, 20.4.2, 20.4.3, 20.4.4 |
| carbon, 25.3.4, 25.3.5 | load, 20.1, 20.1.1 |
| cartesian, 21.9 | merge, 21.16 |
| cavities.closed, 17.3 | new, 20.3.1 |
| ccp4, 25.3.28, 25.3.29 | query, 20.3.2, 21.23.1, 21.23.2 |
| cell, 15.2 | results, 21.23.3 |
| center, 2.2, 4.2, 4.2.5, 10.19, 12.1.26 | read, 20.1, 20.1.1, 33.1, 33.2, 33.3, 33.4, 33.5, 33.6 |
| centers, 2.16.12 | redo, 20.3.11 |
| and representative members, 12.6.1 | save, 20.3.7, 20.4, 20.4.1, 20.4.2, 20.4.3, 20.4.4 |
| chair, 25.5.20 | search, 20.3.2, 21.23, 21.23.1, 21.23.2, 21.23.3, 35.1, 35.2 |
| chair-boat, 25.5.3 | similarity, 20.3.2, 21.23, 21.23.1, 21.23.2, 21.23.3, 35.1, 35.2 |
| change, 2.16.7, 2.16.8, 2.16.11 | smiles, 20.1.2 |
| selection, 11.1.3 | spreadsheet, 20.2, 20.4, 20.4.1, 20.4.2, 20.4.3, 20.4.4, 33.2, 33.4, 33.5, 33.6 |
| speed range, 23.1.2 | structure, 20.1.1, 20.3.7, 20.3.8 |
| changing font in alignment editor, 13.2.6 | substructure, 35.2 |
| charge, 2.15.3, 2.15.4, 2.15.5, 5.5.1, 20.3.2, 21.8.1, 21.8.2, 21.8.3, 21.23.1, 25.4.1 | superimpose, 21.22.1, 21.22.2, 21.22.3 |
| chem convert, 25.6.10 | superposition, 21.22.4, 21.22.5 |
| save, 20.4 | table, 12.2, 20.2, 33.2, 33.4, 33.5, 33.6, 34.1, 34.2 |
| editor, 20.4.2 | undo, 20.3.11 |
| image, 20.4.4 | chemicals, 2.16 |
| table, 20.4.1 | cheminformatics, 2.16, 20.2, 25.6 |
| workspace, 20.4.3 | chemistry, 21.10, 25.6 |
| super, 21.22 | menu, 21 |
| view, 20.2.7 | smiles, 21.5 |
| chemical, 2.16.1, 2.16.2, 2.16.3, 2.16.4, 2.16.5, 2.16.6, 2.16.7, 2.16.8, 2.16.9, 2.16.10, 2.16.11, 2.16.12, 12.6, 20, 20.2.6, 20.2.7, 20.2.9, 20.2.10, 20.2.13, 20.2.14, 20.3.6, 21.7, 21.10, 21.19, 21.21, 21.22, 21.26, 21.27.3, 25.6.9, 25.6.10, 25.6.12, 25.6.13, 25.6.14, 25.6.15 | duplicates, 21.18 |
| browse, 2.16.13 | remove.redundant, 21.18 |
| clustering, 21.14 | chemlib.so, 25.1.2 |
| dictionary, 20.3.3 | chi, 5.5.4, 25.3.17 |
| draw load, 20.1 | chiral, 21.12 |
| editor, 20.3, 20.3.4 | chirality, 21.12 |
| not starting, 25.9.3 | clash, 3.9.5, 5.9 |
| find replace, 21.25 | classes, 20.2.7 |
| fragments, 20.2.12 | clear display and planes, 10.2 |
| group, 20.3.3 | planes, 10.2 |
| groups, 20.3.3, 20.3.4 | click, 2.13.3, 4.1, 4.2, 12.1.9 |
| right click, 20.3.2 | clip, 9.2.4, 10.23, 25.3.10 |
| search, 21.23 | clipboard, 12.6.2 |
| smiles, 20.1.2 | clipping, 25.3.20 |
| spreadsheets, 20.2, 33 | planes, 2.13.1, 4 |
| structure, 20 | tool, 10.22 |
| table display, 20.2.1 | tools, 10.22 |
| tables, 12.2, 33 | closed cavities, 16.5, 17.3 |
| 2D, 21.8 | cluster, 2.16.12, 12.6, 22.4.6 |
| 3D, 21.8 | clustering, 12.5.4 |
| append, 20.3.7 | color, 5.4, 5.5.1, 5.5.2, 12.1.29, 12.6.3, 16.2, 20.2.14, 21.13, 25.3.4, 25.3.5, 25.3.15, 25.3.21, 26, 26.7, 26.7.1, 30 |
| background, 5.4.1 | converting pdb, 8.7 |
| chemical, 20.2.14 | copy, 12.1.21, 20.2.3, 20.3.12, 21.24.2 |
| display mesh, 9.2.3 | cell, 12.1.22 |
| faq, 25.3.21 | chemical, 20.2.3 |
| table, 20.2.5 | paste row, 12.1.21 |
| background, 5.4.1, 10.17 | structure, 20.3.10 |
| mesh, 9.2.3 | row, 12.1.22 |
| table, 20.2.5 | selection to table, 12.1.23 |
| coloring, 5.4 | cpk, 5.2.5, 25.3.22, 26.7.2 |
| column, 12, 12.1.15, 12.1.25, 12.1.26, 12.3, 12.3.1, 25.6.12, 33.2, 33.4, 33.5, 33.6 | creat, 23.3.1, 23.3.2 |
| row width, 12.1.15 | molecular document, 23.3.1 |
| statistics, 12.1.19 | cross, 25.3.9 |
| filter, 33.5, 33.6 | section, 10.22 |
| rename, 33.6 | crystal, 15.2 |
| combo display style, 3.9.9 | crystallographic, 32.1 |
| command, 25.5.17 | analysis tools, 32 |
| commands, 3.1.6, 25.8.1 | cell, 15.2 |
| compare, 20.2.8, 21.15, 21.16 | cell, 15 |
| tables, 21.15 | neigbor, 15.1 |
| compound, 2.16, 12.2, 21.10 | neighbors, 15 |
| compounds, 25.6.3 | crystallography, 15.4, 15.6, 15.7, 25.3.28, 25.3.29 |
| compress, 3.9.6 | csv, 12.1.2, 12.1.3, 12.1.14 |
| conf gen, 21.9 | current, 25.3.23 |
| conformation, 21.9, 22.2.2 | custom, 4.2, 20.2.1, 21.22 |
| conformations, 25.7.2 | label, 7.1 |
| conformers, 21.9 | rotation, 4.2.2 |
| connect, 4.2, 4.2.7, 9.2.2 | cut, 12.1.21 |
| object, 4.2.7 | vertical alignment block, 14.11 |
| connectivity, 20.3.2, 21.23.1 | damaged skin, 25.9.2 |
| conservation, 30 | dash, 25.3.11 |
| construct, 3.1, 3.1.1, 3.1.5, 23.1.1 | data, 8.1 |
| DNA, 3.1.3 | databank, 2.15.1 |
| RNA, 3.1.3 | database, 14.14, 21.19, 21.27, 22.1.2, 22.4.3, 22.4.5 |
| chemical, 3.1.2 | file format, 22.4.3 |
| compound, 3.1.2 | seach and alignment, 14.14 |
| molecule, 3.1 | databases, 25.6.3 |
| nucleic, 3.1.4 | decomposition, 21.19, 21.20 |
| object, 3.1 | default, 2.13.4 |
| protein, 3.1.4 | delete, 25.4.9 |
| sequence, 3.1.4 | column row, 12.1.24 |
| contact, 17.2 | label, 7.1.1 |
| areads, 17.2 | column, 12.1.24 |
| contour, 15.6, 15.7 | label, 7.1.1 |
| map, 15.6 | row, 12.1.24 |
| convert, 2.15.2, 2.16.5, 8.7, 21.11, 25.6.10 | density, 15.4, 15.6, 15.7, 25.3.28, 25.3.29 |
| chemical, 20.2.2 | deselect, 25.3.7 |
| 2D 3D, 21.8 | deviation, 25.4.7 |
| pdb chem, 21.8.1 | dialog, 23.3.5 |
| smiles, 21.5, 21.6 | diffuse, 6 |
| convert2grid, 15.7 | dihedral, 5.5.4, 17.7, 25.3.17 |
| directories preferences, 3.9.2 | interactive, 22.1.9 |
| directory, 3.9 | maps, 22.1.7 |
| disappearing labels, 25.9.2 | preparation, 22.1.3 |
| display, 2.6, 2.13.5, 2.15.8, 3.9, 5.9, 20.2.6, 21.12, 25.3.4, 25.3.5, 25.3.8, 25.3.9, 25.3.10, 25.3.16, 25.3.22, 25.3.31, 25.4.10, 25.4.11, 25.4.20, 25.6.9, 26.2, 30.1, 30.3 | procedure, 22.1.8 |
| chemical, 20.2.6 | project name, 22.1.4 |
| distance restraints, 5.7 | rank, 22.1.14 |
| hydrogen, 5.1 | receptor setup, 22.1.5 |
| mesh, 9.2 | results, 22.1.11, 22.1.12, 22.1.13, 22.1.14 |
| structure, 2.7 | sampling, 25.5.20 |
| tab, 5, 25.3.15 | score, 22.1.14 |
| tether, 5.6 | stack, 22.1.13 |
| CPK, 5.2.5 | template, 22.3 |
| alignment, 2.12 | document, 3.1.7, 23.3.4, 23.3.5, 26 |
| chemical, 20.2.1 | navigation, 23.3.6 |
| distance, 5.7 | documents, 25.3.19 |
| html, 2.12 | dollar, 25.8.3 |
| hydrogen, 5.1 | donator, 20.3.5 |
| polar, 5.1 | envelope, 5, 5.2 |
| macroshape, 9.2.1 | surface, 3.9.5 |
| meshes, 9.2 | double, 20.3.6 |
| and display.macroshape, 9 | download, 1.3, 25.6.3 |
| molecule, 20.2.2 | drag, 2.13.2, 2.14.5, 3.9.7, 5.5.2, 13.2.5, 23.3.4, 25.4.5, 29.2 |
| origin, 7.3 | and drop sequences, 13.2.5 |
| representations, 5, 5.2 | residue label, 10.15 |
| restraints, 5.7 | draganddrop, 2.13.2 |
| ribbon, 5.2.3 | draw, 20.3.12, 21.21, 25.6.7 |
| skin, 5.2.4 | chemical, 20.3.1 |
| surface, 5.2.6, 9.1 | drop, 2.13.2, 2.14.5, 13.2.5, 23.3.4, 25.4.5, 29.2 |
| surfaces, 9 | drug, 21.1, 25.6.12, 25.6.14 |
| table, 2.12, 20.2.1 | druglikeness, 20.3.5 |
| tethers, 5.6 | easy, 2.13.8 |
| wire, 5.2.1 | rotate, 10.12 |
| xstick, 5.2.2 | edit, 2.16.7, 2.16.8, 2.16.11, 25.6.8 |
| distance, 2.15.9, 7.2, 17.5, 21.15, 25.3.11, 25.4.8, 25.4.10 | alignment, 13.2.7 |
| faq, 25.4.10 | chemical, 20.3.8 |
| label, 3.9.7 | moledit, 20.2.4 |
| distances, 7 | molecular document, 23.3.2 |
| disulfide, 19.7 | molecule, 20.3 |
| diverse set, 12.5.4 | movie, 24.3.7 |
| dock, 22, 22.1, 22.1.2, 22.5, 25.5.3, 25.5.4, 25.5.5, 25.5.6, 25.5.8, 25.5.9, 25.5.11, 25.5.12, 25.5.13, 25.5.14, 25.5.15, 25.5.16, 25.5.17, 36.3, 36.4, 36.6 | slide description, 23.2.3 |
| command, 25.5.17 | table row, 12.1.17 |
| docking, 2.15.2, 16.4, 22, 22.1.3, 22.1.15, 22.2, 22.2.1, 22.2.2, 22.4, 22.4.1, 22.4.2, 22.4.5, 22.6, 22.6.1, 22.6.2, 22.6.3, 22.6.4, 22.6.5, 22.6.7, 22.6.8, 22.6.9, 25.5, 25.5.1, 25.5.10, 25.5.18, 25.5.19, 36, 36.1, 36.2, 36.5 | molecule, 20.2.4 |
| start, 22.1.3 | movie, 24.3.7 |
| template, 22.3 | structure, 20.2.4 |
| adjust, 22.1.6 | editor, 2.16.1, 2.16.2, 2.16.7, 2.16.8, 2.16.11, 25.4.12, 30.2 |
| batch, 22.1.10 | eds, 15.4, 15.6, 15.7 |
| binding, 22.1.6 | electron, 15.4, 15.6, 15.7, 25.3.28, 25.3.29 |
| conformations, 25.5.20 | denisty map, 15.5 |
| flexible.rings, 25.5.20 | densitry map.contour, 15 |
| hitlist, 22.1.14 | map, 15, 22.5 |
| electrostatics, 22.6.7 | gui, 25.3 |
| element, 20.3.6 | guided dock, 25.5.4 |
| energy, 2.15.2, 5.9, 16.2, 22.1.13, 25.3.19, 25.5.1, 25.5.2, 25.7.2 | hardware, 25.2 |
| mesh, 25.3.19 | hitlist, 25.5.8 |
| enumeration, 21.19 | iSee, 25.3.31 |
| eps, 20.4.4 | icmPocketFinder, 25.5.11 |
| epsilon, 25.4.15 | insert column, 25.6.12 |
| errno, 25.1.2 | installation, 25.1 |
| error, 25.1.2 | interactions, 25.3.11 |
| escaping, 2.13.1 | ligandbox, 25.5.10 |
| exact, 21.15 | merge, 25.4.5 |
| exit, 3.12 | molcart 64bit, 25.1.2 |
| explicit, 20.2.7, 22.2.1 | query, 25.6.6 |
| flex, 22.2.1 | sdf, 25.6.4 |
| extract, 2.14.4, 2.16.4, 13.1, 25.4.12, 25.6.13, 30.2 | text search, 25.6.16 |
| icb, 3.3 | molecule c, 25.3.5 |
| sub alignment, 14.10 | moledit, 25.6.7 |
| icb, 3.3 | movie planes, 25.3.20 |
| faq, 25, 25.2, 25.3, 25.3.12, 25.4, 25.5, 25.7, 25.8, 25.8.2 | newscript, 25.8.1 |
| ISISdraw, 25.6.8 | nmr, 25.4.18 |
| atom charge, 25.4.21 | nvidia error, 25.1.1 |
| display, 25.3.16 | origin, 25.3.9 |
| backbone, 25.3.12 | pmf score, 25.5.7 |
| background color, 25.3.2 | pockets, 25.3.13 |
| binding energy, 25.5.2 | preserve coordinates, 25.6.11 |
| change torsion, 25.4.16 | receptor selection, 25.5.15 |
| chem table display, 25.6.9 | reload dock, 25.5.5 |
| chemical monitor, 25.6.15 | remove select, 25.3.6 |
| query2, 25.6.5 | renumber, 25.4.4 |
| cheminformatics, 25.6 | ringflex dock, 25.5.3 |
| clipping plane, 25.3.10 | rmsd, 25.4.7 |
| color carbon, 25.3.4 | rmsdtips, 25.4.8 |
| skin, 25.3.15 | scanScoreExternal, 25.5.18 |
| convert chemical from pdb, 25.4.1 | scanScoreExternal2, 25.5.19 |
| covalent bond, 25.4.2 | score, 25.5.9 |
| delete, 25.4.9 | script, 25.8 |
| deselect, 25.3.7 | sgi, 25.1.3 |
| dihedral, 25.3.17 | simulations, 25.7 |
| dock probe, 25.5.14 | solvent accessible surface table, 25.4.19 |
| repeat, 25.5.6 | ss, 25.4.17 |
| docking, 25.5 | structure, 25.4 |
| docktime, 25.5.12 | superimpose, 25.4.6 |
| dollar, 25.8.3 | thoroughness, 25.5.13 |
| druglikeness, 25.6.14 | transparent ribbon, 25.3.3 |
| energy, 25.5.1 | truncate mesh, 25.3.14 |
| extract ligand, 25.6.13 | view stack, 25.7.2 |
| flexible dock, 25.5.16 | weak hydrogen bonds, 25.4.20 |
| ring docking, 25.5.20 | write pdb, 25.4.3 |
| font size, 25.3.1 | faqcontour, 25.3.29 |
| gl failure, 25.9.1 | faqhbondstrength, 25.3.30 |
| faqoda, 25.3.27 | graphics, 26.7 |
| faqstereo, 25.9.4 | card, 25.1.1 |
| fasta, 2.14, 2.14.2 | controls, 4 |
| features, 1.2 | defects, 25.9.2 |
| file, 3.2, 8.6.1 | preferences, 3.9.3 |
| load, 3.4 | tips, 2.13.1 |
| menu, 3 | shadow, 10.13 |
| quick image, 3.7 | grid, 20.2.1, 21.22, 25.6.9, 36.6 |
| icb, 2.11 | grob, 3.9.5, 15.4, 15.6, 15.7 |
| recent, 3.10 | group, 21.20 |
| filter, 25.3.4 | groups, 21.1, 21.2, 21.26 |
| selection, 11.1.4 | gui, 3.9.4 |
| tut, 26.5 | preferences, 3.9.4 |
| find, 8.2 | overview, 2 |
| chemical, 20.2.11 | guided docking, 25.5.4 |
| pdb, 8.2 | h, 25.3.19 |
| finding dihedral angle, 17.7 | h-bond, 2.15.8, 25.3.11, 25.3.19, 30.3 |
| planar angle, 17.6 | hardware, 25.2 |
| fingerprint, 25.6.5, 25.6.6 | stereo, 10.7 |
| fit, 20.2.13, 22.5, 25.5.16 | hbond, 25.3.30 |
| fitting, 12.3.8, 22.5 | strength, 25.3.30 |
| flex super, 21.22.3 | header, 8.6.2, 12.3.3 |
| flexibility, 16.3 | health, 16.2, 31.3 |
| flexible, 21.22, 22.2, 22.2.1, 22.2.2, 25.5.16, 36.6 | helices strands, 16.1 |
| rings, 25.5.3 | helix, 25.3.21 |
| fog, 4, 10.5 | hetero, 20.2.7 |
| font, 3.9, 3.9.7, 5.5.1, 5.5.2, 12.1.26, 12.6.3, 20.2.7 | hidden block format, 13.2.14 |
| preferences, 3.9.7 | width, 13.2.14 |
| size, 13.2.6, 25.3.1 | hide, 12.1.25 |
| foreground, 26.7.1 | high, 3.8 |
| formal, 2.15.3, 25.4.21 | quality, 10.11 |
| format, 12.1.26 | hints, 2.13 |
| formula, 2.16.6, 20.3.5, 21.1 | his, 8.7.1, 25.4.15 |
| fragment, 20.2.14, 21.20 | histidine, 25.4.15 |
| fragments, 21.26 | tautomer, 25.4.15 |
| frame, 14.3 | histogram, 12.3, 12.3.1, 12.3.3, 12.3.4, 12.3.5, 12.3.6, 12.3.7, 12.3.8, 12.3.9, 12.3.10, 12.3.11, 12.3.13, 22.4.10, 22.4.11 |
| frequency, 20.2.14 | hitlist, 22.1.11, 22.1.14, 22.4.8, 22.4.9, 22.4.11, 25.5.8 |
| front, 9.2.4, 10.23 | homology, 19, 19.1, 19.1.1, 19.4, 19.5, 31, 31.1 |
| full scene antialias, 10.10 | loops, 19.3 |
| screen, 10.8 | model introduction, 19.1 |
| function, 12.1.18, 12.1.19 | |