|
Jan 30 2012
Feedback.
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Index
| 2D, 5.5.10, 16.2.21, 16.2.26, 17.4, 17.6.2, 17.6.4 | center Follows Clipping, 3.4.1.15.3 |
| to 3D, 17.6, 17.6.3 | clash Style, 3.4.1.15.3 |
| depiction, 17.6.2 | clashWidth, 3.4.1.15.3 |
| 3D, 5.5.10, 16.2.21, 16.2.26, 16.2.29, 17.6.2, 22.1.11 | clip Grobs, 3.4.1.15.3 |
| chemical, 17.6.1 | Skin, 3.4.1.15.3 |
| interactive ligand editor, 3.5.5 | Static, 3.4.1.15.3 |
| ligand editor, 19.4 | discrete Rainbow, 3.4.1.15.4 |
| object, 5.2.6 | displayLineLabels, 3.4.1.15.7 |
| predict, 14 | displayMapBox, 3.4.1.15.3 |
| helices strands, 14.1 | distance Label Drag, 3.4.1.15.1 |
| local flexibility, 14.3 | dnaBallRadius, 3.4.1.15.9 |
| protein health, 14.2 | dnaRibbonRatio, 3.4.1.15.9 |
| tools identify ligand binding pocket, 14.5 | dnaRibbonWidth, 3.4.1.15.9 |
| oda, 14.4 | dnaRibbonWorm, 3.4.1.15.9 |
| 4D, 18.2.2, 22.9.1 | dnaStickRadius, 3.4.1.15.9 |
| dock, 19.12 | dnaWormRadius, 3.4.1.15.9 |
| 64, 23.1.2 | font Scale, 3.4.1.15.7 |
| APF, 17.19.3 | fontColor, 3.4.1.15.7 |
| template, 17.19 | fontLineSpacing, 3.4.1.15.7 |
| ActiveICM, 3.4.1.11 | grobLineWidth, 3.4.1.15.3 |
| Area, 23.3.25 | hbond Ball Period, 3.4.1.15.1 |
| Atom Single Style, 3.4.1.15.3 | Style, 3.4.1.15.1 |
| Bad Groups, 23.7.12, 23.7.15 | hbondAngleSharpness, 3.4.1.15.1 |
| Blast, 23.3.24 | hbondMinStrength, 3.4.1.15.1 |
| BlastDB Directory, 3.4.1.15.2 | hbondStyle, 3.4.1.15.1 |
| alphas, 5.5.3 | hbondWidth, 3.4.1.15.1 |
| COLLADA, 3.4.1.6 | hetatmZoom, 3.4.1.15.1 |
| CPK, 3.5.1, 5.1.1 | hydrogenDisplay, 3.4.1.15.1 |
| CisTransAmide Angle, 18.4.9.6 | light, 3.4.1.15.3 |
| Clash Threshold, 3.4.1.15.10 | lightPosition, 3.4.1.15.3 |
| DNA, 3.4.1.1.4, 9, 9.2.3 | mapLineWidth, 3.4.1.15.3 |
| Display, 23.3.25 | occupancy Radius Ratio, 3.4.1.15.3 |
| Distance, 18.4.9.6 | occupancyDisplay, 3.4.1.15.3 |
| Dock Directory, 3.4.1.15.2 | quality, 3.4.1.15.3 |
| Docking, 23.3.25 | rainbow Bar Style, 3.4.1.15.4 |
| Editor, 3.4.1.15.2 | resLabelDrag, 3.4.1.15.7 |
| Error in saving configuation settings: You are not a license administrator, 23.10.2 | resize Keep Scale, 3.4.1.15.3 |
| FILTER.Z, 3.4.1.15.2 | ribbonRatio, 3.4.1.15.9 |
| gz, 3.4.1.15.2 | ribbonWidth, 3.4.1.15.9 |
| uue, 3.4.1.15.2 | ribbonWorm, 3.4.1.15.9 |
| Filter.zip, 3.4.1.15.2 | rocking, 3.4.1.15.4 |
| Formula, 23.7.12, 23.7.15 | Range, 3.4.1.15.4 |
| Frequently Asked Questions, 23 | Speed, 3.4.1.15.4 |
| GAMESS, 3.4.16.11, 15.11 | selectionStyle, 3.4.1.15.3 |
| GIF, 3.4.1.14, 8 | site Label Drag, 3.4.1.15.7 |
| GRAPHIC.store Display, 3.4.1.15.3 | Shift, 3.4.1.15.7 |
| NtoC Rainbow, 3.4.1.15.4 | siteArrow, 3.4.1.15.7 |
| alignment Rainbow, 3.4.1.15.4 | stereoMode, 3.4.1.15.3 |
| atomLabelShift, 3.4.1.15.7 | stickRadius, 3.4.1.15.1 |
| ballStickRatio, 3.4.1.15.1 | surfaceDotDensity, 3.4.1.15.3 |
| surfaceProbeRadius, 3.4.1.15.3 | ISIS, 23.7.8 |
| transparency, 3.4.1.15.3 | IUPAC, 16.8 |
| wire Width, 3.4.1.15.1 | Icm Prompt, 3.4.1.15.10 |
| wormRadius, 3.4.1.15.9 | Inx Directory, 3.4.1.15.2 |
| xstick Backbone Ratio, 3.4.1.15.1 | JPEG, 3.4.1.14 |
| Hydrogen Ratio, 3.4.1.15.1 | KMZ, 3.4.1.6 |
| Style, 3.4.1.15.1 | Log Directory, 3.4.1.15.2 |
| Vw Ratio, 3.4.1.15.1 | LogP, 20.6 |
| GROB.arrowRadius, 3.4.1.15.3 | LogS, 20.6 |
| atomSphereRadius, 3.4.1.15.3 | MOL, 16, 16.1.1, 16.2.1, 16.2.21, 16.2.22, 16.2.23, 16.2.24, 18.4.3, 20.2 |
| contourSigmaIncrement, 3.4.1.15.3 | MOL2, 16.1.1, 18.4.3 |
| relArrow Size, 3.4.1.15.3 | MOLT, 21.1 |
| relArrowHead, 3.4.1.15.3 | MOVIE.frame Grab Mode, 3.4.1.15.4 |
| GUI, 1 | Map Atom Margin, 3.4.1.15.10 |
| auto Save, 3.4.1.15.4 | Sigma Level, 3.4.1.15.10 |
| Interval, 3.4.1.15.4 | Markush, 22.5.21 |
| autoSave, 23.3.32 | create, 22.5.19 |
| autoSaveInterval, 23.3.32 | Max_Fused_Rings, 17.1 |
| max Sequence Length, 3.4.1.15.4 | Mnconf, 3.4.1.15.10 |
| table Row Mark Colors, 3.4.1.15.4 | MolIPSA, 23.7.12, 23.7.15 |
| workspace Folder Style, 3.4.1.15.4 | MolLogP, 23.7.12, 23.7.15 |
| workspaceTabStyle, 3.4.1.15.4 | MolLogS, 23.7.12, 23.7.15 |
| HBA, 23.7.12, 23.7.15 | MolPSA, 17.1 |
| HBD, 23.7.12, 23.7.15 | MolVol, 17.1 |
| Hbond to selection, 18.4.9.6 | Molcart, 16.9.3 |
| Hbonds, 19.4 | MoldHf, 17.1, 23.7.12, 23.7.15 |
| How To Guide, 2 | Movie.fade Nof Frames, 3.4.1.15.4 |
| Html, 4.1.8 | quality, 3.4.1.15.4 |
| Hydrogen.bond, 3.4.1.15.5 | Auto, 3.4.1.15.4 |
| ICM, 1 | NCBI, 23.3.24 |
| Browser How To, 2.1 | NMR, 4.1.1 |
| Pro How To, 2.2 | Nof_Atoms, 17.1 |
| graphics crash, 23.10.3 | Nof_Chirals, 17.1 |
| IMAGE.bondLength2D, 3.4.1.15.6 | Nof_HBA, 17.1 |
| color, 3.4.1.15.6 | Nof_HBD, 17.1 |
| compress, 3.4.1.15.6 | Nof_Rings, 17.1 |
| gammaCorrection, 3.4.1.15.6 | Nof_RotBonds, 17.1 |
| generateAlpha, 3.4.1.15.6 | Non-overlap, 18.4.9.6 |
| lineWidth, 3.4.1.15.6 | Nvidia GL failutre, 23.10.3 |
| lineWidth2D, 3.4.1.15.6 | ODA, 23.3.25 |
| orientation, 3.4.1.15.6 | Optimal, 23.3.25 |
| paper Size, 3.4.1.15.6 | Output Directory, 3.4.1.15.2 |
| previewResolution, 3.4.1.15.6 | PBS, 18.4.6 |
| previewer, 3.4.1.15.6 | PCA, 20.6.1, 20.6.3 |
| print, 3.4.1.15.6 | analysis, 17.13 |
| printerDPI, 3.4.1.15.6 | PDB, 3.4.5.3, 4.1.4, 4.1.8, 4.2, 9.1, 12.3, 16.4, 19.7 |
| scale, 3.4.1.15.6 | Directory, 3.4.1.15.2 |
| stereoAngle, 3.4.1.15.6 | Style, 3.4.1.15.2 |
| stereoBase, 3.4.1.15.6 | link, 20.1.31 |
| stereoText, 3.4.1.15.6 | Search, 3.4.2.12, 3.4.2.13, 3.4.2.14, 3.4.2.15, 3.4.2.16 |
| Homology, 3.4.2.15 | SEQUENCE.site Colors, 3.4.1.15.4 |
| Identity, 3.4.2.14 | SITE.label Style, 3.4.1.15.7 |
| Sequence, 3.4.2.16 | labelOffset, 3.4.1.15.7 |
| convert, 4.2, 22.3.2 | wrap Comment, 3.4.1.15.7 |
| query, 4.1.1.1 | SLIDE.ignore Background Color, 3.4.1.15.4 |
| search, 4.1.1, 4.1.1.1, 4.1.2, 22.3.1 | Fog, 3.4.1.15.4 |
| sensitive search, 4.1.2 | SMILES, 16.3.11, 16.6.2 |
| similarity, 4.1.2 | Select Min Grad, 3.4.1.15.10 |
| PFAM, 3.4.1.6 | Show Res Code In Selection, 3.4.1.15.7 |
| PLOT.Yratio, 3.4.1.15.8 | Smiles, 23.7.12, 23.7.15, 23.7.17 |
| color, 3.4.1.15.8 | Swissprot, 3.4.1.6 |
| date, 3.4.1.15.8 | Dat, 3.4.1.15.2 |
| draw Tics, 3.4.1.15.8 | link, 20.1.31 |
| font, 3.4.1.15.8 | Temp Directory, 3.4.1.15.2 |
| fontSize, 3.4.1.15.8 | UNIX, 18.4.6 |
| labelFont, 3.4.1.15.8 | Uniprot, 20.1.31 |
| lineWidth, 3.4.1.15.8 | VLS, 18.4, 18.4.1, 18.4.2, 18.4.6, 18.4.9.2 |
| logo, 3.4.1.15.8 | preferences, 18.4.4 |
| markSize, 3.4.1.15.8 | Var Label Style, 3.4.1.15.7 |
| orientation, 3.4.1.15.8 | Volume, 23.7.12, 23.7.15 |
| paper Size, 3.4.1.15.8 | Change, 18.4.9.6 |
| previewer, 3.4.1.15.8 | Water Radius, 3.4.1.15.10 |
| rainbowStyle, 3.4.1.15.8 | Wire Style, 3.4.1.15.1 |
| seriesLabels, 3.4.1.15.8 | X-ray, 4.1.1, 18.1.1.1 |
| PLS, 20.6.1 | XPDB Directory, 3.4.1.15.2 |
| PNG, 3.1.19, 3.4.1.14, 8 | Xstick, 3.5.1, 5.1.1 |
| Pharmacophore RMSD, 18.4.9.6 | a-bright, 3.5.2 |
| Projects Directory, 3.4.1.15.2 | acceptor, 16.3.5, 17.20.1 |
| Prosite Dat, 3.4.1.15.2 | acid, 3.4.1.1.4 |
| Protein, 23.3.25 | active, 7, 23.4.3 |
| Viewer, 3.4.1.15.2 | activeICM, 7.1 |
| PubMed, 4.1.9 | activeicm, 7, 7.4, 7.6, 7.6.1, 23.4 |
| Reference, 20.1.31 | advanced, 7.6 |
| QSAR, 20.6, 20.6.1 | background images, 7.7 |
| build model, 22.5.13 | control, 7.5 |
| predict, 22.5.14 | activityy, 20.6 |
| R, 16.12, 17.17.3 | add image album, 5.12.4 |
| and S, 23.6.22 | adding fragment, 16.3.4 |
| R-group, 16.11 | in editor, 16.3.4 |
| RMSD, 11.2 | administration, 16.13.4 |
| Ramachandran Plot, 10.9 | advanced alignment selectioection, 9.5.12 |
| Real Format, 3.4.1.15.10 | album, 5.12.4 |
| Receptor Setup, 18.1.4 | alias, 16.3.3 |
| Label Shift, 3.4.1.15.7 | align, 3.1.15, 3.3.5, 9.4.1, 17.4 |
| Style, 3.4.1.15.7 | color 2D scaffold, 17.4 |
| RotB, 23.7.12, 23.7.15 | dna protein, 9.4.3 |
| SAR, 20.6 | multiple sequences, 9.4.4 |
| table, 22.5.21 | two sequences, 9.4.2 |
| SCORE, 23.6.7, 23.6.18 | DNA to protein, 9.2.7, 9.4.3 |
| SDF, 16, 16.1.1, 16.2.21, 16.2.22, 16.2.23, 16.2.24, 18.4.3, 20.2 | multiple, 9.4.4 |
| two sequences, 9.2.5, 9.4.2 | store, 6.1.4 |
| alignment, 3.3.6, 17.19.1, 17.19.2, 23.5.12 | animations, 6 |
| comment, 9.5.3 | annotate, 17.3 |
| editing, 9.5.1 | by substructure, 17.3 |
| editor, 9.5 | antialias, 3.4.1.14, 3.4.3.10 |
| example, 9.2.14 | lines, 3.4.3.17 |
| font size, 23.3.1 | lines, 3.4.3.17 |
| format, 9.5.8 | apf, 17.19.1, 17.19.2, 17.20, 18.4.9.7, 19.13, 22.5.18, 23.7.18 |
| gaps, 9.5.8 | flexible template, 17.19.2 |
| introduction, 9.4.1 | pairwise, 17.19.1 |
| reorder, 9.2.12 | super, 17.19 |
| search, 9.5.9 | tools, 17.20 |
| selection, 9.5.10 | consensus ph4, 17.20.1 |
| view options, 9.5.7 | pairwise score, 17.20.2 |
| box, 9.5.6 | screen, 17.20.3 |
| color, 9.5.5, 9.5.6 | alignment, 17.19.3 |
| comment, 9.5.3 | apf3Dqsa, 23.7.18 |
| consensus, 9.5.5, 9.5.12 | append.rows, 3.4.10.7 |
| cut, 9.2.11 | applying prediction models, 20.6.2 |
| delete, 9.5.2 | area, 3.4.6.4, 3.4.7.3, 10.3, 14.4, 18.6, 18.6.1, 18.6.2 |
| display title, 9.5.7 | aromatic, 16.2.26, 17.20.1 |
| editor, 9.5 | arrange, 3.1.18 |
| extract, 9.2.10 | window, 3.1.18 |
| gaps, 9.5.8 | arrow, 3.4.1.1.8 |
| horizontal scroll, 9.5.7 | graph, 23.3.8 |
| multiple, 9.2.8 | as_graph, 23.3.8 |
| options, 9.5.7 | asparagine, 3.4.16.2, 15.2 |
| print, 9.5.2 | assign, 5.1.4 |
| rename, 9.5.7 | 2D coordinates, 17.6.2 |
| reorder, 9.2.12 | helices, 3.4.6.1, 14.1 |
| ruler, 9.5.7 | strands, 3.4.6.1, 14.1 |
| save, 9.5.2 | atom, 3.4.1.15.5, 16.2.26, 22.1.6, 22.1.7, 23.3.4, 23.3.5, 23.3.8, 23.3.15, 23.3.16, 23.5.10 |
| search, 9.5.9 | charge, 23.5.21 |
| selection, 9.5.10, 9.5.11, 9.5.12 | atomLabelStyle, 3.4.1.15.7 |
| sequence offset, 9.5.7 | atomic energy circles, 19.5 |
| shade, 9.5.6 | property field, 17.19.1, 17.19.2 |
| table, 9.5.7 | score, 17.20.2 |
| view, 9.5.7 | fields, 17.20, 17.20.1, 17.20.3, 22.5.18 |
| alignments, 3.3, 9.4, 22.2 | attachment, 16.3.2, 16.9.1 |
| alpha, 3.5.2 | point, 17.17.2 |
| channel, 3.4.1.15.6 | author, 4.1.1.4 |
| ambient, 3.5.2 | play slide, 7.5 |
| amidinium, 17.5 | autofit, 18.5 |
| amino, 3.4.1.1.4 | autosave, 23.3.32 |
| analysis, 3.4.4, 9.2 | ave, 20.7 |
| angle, 3.4.7.7, 3.4.7.8, 5.5.5, 5.6, 5.9.6, 10.7, 10.8, 23.3.17, 23.5.16 | avi, 8, 8.1 |
| angstrom, 23.5.7 | axes, 20.4.11 |
| animate, 3.4.3.15, 5.7.6 | axis, 20.4.7 |
| view, 5.7.6 | options, 20.4.6 |
| animation, 6.1, 6.1.1, 6.1.2, 6.1.3, 6.1.4 | grid, 20.4.6 |
| title, 20.4.6 | bugs, 23.10 |
| b-factor, 3.4.6.3, 14.3, 18.1.1.1, 22.3.6 | build, 6.1.1 |
| backbone, 23.3.12 | homology model, 13.3 |
| background, 5.3.2, 5.3.3 | hydrogens, 3.4.16.5, 15.5 |
| color shortcut, 23.3.2 | buried molSurface, 18.4.9.6 |
| images activeicm, 7.7 | buttons, 7.6 |
| image, 5.3.3 | bye, 3.4.1.18 |
| backup, 3.4.2.11 | cache, 7.6.1 |
| bad, 17.1 | calculate, 17.1, 23.6.2 |
| groups, 16.3.5 | properties, 17.1 |
| ball, 3.4.1.15.5 | startup, 23.9.2 |
| and stick, 3.5.1, 5.1.1 | carbon, 23.3.4, 23.3.5 |
| bank, 4.1.1 | carboxylic acid, 17.5 |
| basic alignment selection, 9.5.11 | cartesian, 17.9 |
| basicsel, 3.2.3 | cavities, 10 |
| batch, 18.1.10, 18.4.6, 18.6.8 | closed, 3.4.7.4, 10.4 |
| file, 18.1.10.2 | ccp4, 23.3.26, 23.3.27 |
| index, 18.1.10.4 | cell, 3.4.5.2, 12.2 |
| loaded icm object, 18.1.10.1 | center, 3.1.2, 3.4.3.20, 5.9, 5.9.5, 20.1.31, 23.5.22 |
| mol mol2, 18.1.10.3 | and representative members, 20.7.1 |
| molcart, 18.1.10.5 | chain.breaks, 23.3.33 |
| run, 18.1.11 | chains, 3.4.7.1 |
| beep, 23.3.34 | chair, 23.6.21 |
| begin docking simulation, 18.1.8 | chair-boat, 23.6.3 |
| best, 16.2.32 | change selection, 3.2.5 |
| binding, 23.3.13, 23.6.2, 23.6.11 | speed range, 6.1.2 |
| properties, 5.2.1 | changing font in alignment editor, 9.5 |
| bioinfo align dna protein, 9.2.7 | charge, 3.4.3.21, 4.3, 4.3.1, 4.3.2, 5.5.2, 16.3.2, 16.5.1, 16.5.2, 16.5.3, 16.9.1, 17.20.1, 18.4.9.6, 23.5.1 |
| multiple, 9.2.8 | groups, 18.1.7, 23.6.23 |
| two sequences, 9.2.5 | chem convert, 23.7.10 |
| links, 9.2.9 | save, 16.6 |
| menu, 3.4.4 | editor, 16.6.2 |
| secondary structure, 9.2.2 | image, 16.6.4 |
| translation, 9.2.3 | table, 16.6.1 |
| biological, 3.4.5.3, 12.3 | workspace, 16.6.3 |
| biomolecule, 3.4.5, 3.4.5.3, 12.3, 22.3.4, 22.3.8 | super, 17.18 |
| bit, 23.1.2 | view, 16.2.26 |
| blast, 9.3 | chemical, 16, 16.2.25, 16.2.26, 16.2.28, 16.2.29, 16.2.32, 16.2.33, 16.3.6, 16.12, 16.13.3, 17.6.2, 17.10, 17.17.2, 17.17.4, 17.18, 17.19.1, 17.19.2, 20.7, 23.7.9, 23.7.10, 23.7.12, 23.7.13, 23.7.14, 23.7.15 |
| boat, 23.6.21 | clustering, 17.12 |
| bond, 4.3, 4.5, 13.9, 16.3.6, 22.3.3, 23.5.1, 23.7.12, 23.7.15 | dictionary, 16.3.3 |
| covalent, 23.5.2 | draw load, 16.1 |
| type, 4.3.1, 4.3.2, 16.5.1, 16.5.2, 16.5.3 | editor, 16.3, 16.3.4 |
| bonding, 5.1.9 | not starting, 23.10.5 |
| preferences, 3.4.1.15.1 | find replace, 16.11 |
| box, 3.4.1.1.9, 3.4.1.15.7, 5.5.17, 23.6.10 | fragments, 16.2.31 |
| break, 3.1.10 | group, 16.3.3 |
| browse, 16.2.29, 18.1.12.1 | groups, 16.3.3, 16.3.4 |
| mode, 16.2.29 | right click, 16.3.2 |
| molt, 21.2 | search, 16.9 |
| stack, 3.4.16.10, 15.10 | filter, 16.9.2 |
| smiles, 16.1.2 | chemlib.so, 23.1.2 |
| spreadsheet, 23.7.19 | chi, 5.5.5, 23.3.17 |
| compare, 16.2.19 | chiral, 17.11 |
| spreadsheets, 16.2 | chirality, 17.11 |
| structure, 16 | chrome, 23.4 |
| superimpose, 22.5.18 | cis trans proline, 22.4.3 |
| apf, 22.5.17 | clash, 3.4.1.15.5, 5.5.16 |
| rigid flexible, 22.5.16 | volumes, 18.4.10 |
| table, 23.7.17 | classes, 16.2.26 |
| display, 16.2.1 | clear display and planes, 3.4.3.2 |
| tables, 20.2 | selection, 3.2.4 |
| 2D, 16.5 | planes, 3.4.3.2 |
| 3D, 16.5 | click, 3.1.16, 5.8, 5.9 |
| append, 16.3.7 | clip, 5.2.9, 5.10.1, 23.3.10 |
| clustering, 17.12, 17.12.1 | clipboard, 5.12.2, 20.7.2 |
| convert, 3.4.16.1, 4.3, 4.3.1, 4.3.2, 15.1, 16.5, 16.5.1, 16.5.2, 16.5.3, 23.5.1 | clipping, 23.3.18 |
| display.fit, 23.7.19 | planes, 3.1.3, 5 |
| draw, 16.3.1, 22.5.1 | tool, 5.10 |
| duplicates, 16.2.18 | tools, 5.10 |
| edit, 16.3.8, 22.5.2 | closed cavities, 3.4.6.5, 3.4.7.4, 14.5 |
| editor, 16.6, 16.6.1, 16.6.2, 16.6.3, 16.6.4 | cluster, 18.4.6, 18.4.9.7, 20.7 |
| load, 16.1, 16.1.1 | representative.center, 17.12.2 |
| merge, 17.15 | clustering, 20.6.4 |
| name, 16.8 | collada, 3.5.6, 5.2.4 |
| new, 16.3.1 | color, 3.4.6.2, 5.3, 5.3.1, 5.5.2, 5.5.3, 14.2, 16.2.33, 17.4, 20.1.34, 20.7.3, 23.3.4, 23.3.5, 23.3.15, 23.3.19 |
| properties, 16.2.17 | alignment, 9.5.5 |
| query, 16.3.2, 16.9.1, 16.9.3 | background, 5.3.2 |
| read, 16.1, 16.1.1 | by, 5.3 |
| redo, 16.3.12 | chemical, 16.2.33 |
| save, 16.3.7, 16.6, 16.6.1, 16.6.2, 16.6.3, 16.6.4 | display mesh, 5.2.8 |
| search, 16.3.2, 16.9, 16.9.1, 16.9.3, 22.5.4, 22.5.5 | faq, 23.3.19 |
| similarity, 16.3.2, 16.9, 16.9.1, 16.9.3, 22.5.4, 22.5.5 | table, 16.2.24 |
| smiles, 16.1.2 | 2D sketch, 16.10.5 |
| spreadsheet, 16.2, 16.6, 16.6.1, 16.6.2, 16.6.3, 16.6.4 | background, 3.4.3.18, 5.3.2 |
| structure, 16.1.1, 16.3.7, 16.3.8 | distance, 5.5.12 |
| substructure, 22.5.5 | mesh, 5.2.8 |
| superimpose, 17.18.1, 17.18.2, 17.18.3 | table, 16.2.24 |
| superposition, 17.19, 17.19.3 | coloring, 5.3.1 |
| table, 16.2, 20.2, 22.5.1, 22.5.2 | column, 20, 20.1.20, 20.1.30, 20.1.31, 20.4, 20.4.1, 23.7.12 |
| undo, 16.3.12 | row width, 20.1.20 |
| cheminformatics, 16.2, 23.7 | statistics, 20.1.24 |
| tutorials, 22.5 | color, 20.1.8 |
| chemistry, 17.10, 23.7 | hide, 16.2.6 |
| convert, 17.6 | show, 16.2.6 |
| 2dto3d, 17.6.1 | combinatorial chemistry, 17.17 |
| menu, 17 | library, 22.5.20 |
| pca, 17.13 | combine, 3.4.10.5 |
| smiles, 17.6.3 | display style, 3.4.1.15.9 |
| duplicates, 17.16 | command, 23.6.17 |
| remove.redundant, 17.16 | line, 23.3.31 |
| compare, 16.2.27, 17.14, 17.15 | row, 20.1.27 |
| table, 16.2.19 | selection to table, 20.1.28 |
| tables, 17.14 | chemical, 16.2.14 |
| compatible, 3.4.1.9 | cpk, 5.1.6, 23.3.20 |
| complex, 18.4.9.5 | crash, 3.4.2.11 |
| compound, 17.10, 20.2 | creat, 6.6.1 |
| compounds, 23.7.3 | create, 20.1.1 |
| compress, 3.4.1.15.6 | modify markush, 17.17.1 |
| conditions, 16.9.2 | cross, 23.3.9 |
| gen, 17.9 | section, 5.10 |
| conformation, 17.9, 18.2.2 | crystal, 3.4.5.2, 12.2 |
| conformations, 23.8.2 | crystallographic analysis, 12 |
| conformers, 17.9 | biomolecule, 12.3 |
| connect, 5.2.7, 5.9, 5.9.7 | contour map, 12.6 |
| object, 5.9.7 | convert2grid, 12.7 |
| connectivity, 16.3.2, 16.9.1 | crystallographic cell, 12.2 |
| consensus, 3.4.7.1, 17.20 | load eds, 12.4 |
| pharmacophore, 17.20.1 | maps cell, 12.5 |
| construct, 3.4.1.1, 3.4.1.1.1, 6.1.1 | symmetry packing, 12.1 |
| DNA, 3.4.1.1.3 | tools, 22.3.4 |
| RNA, 3.4.1.1.3 | cell, 3.4.5.2 |
| chemical, 3.4.1.1.2 | cell, 3.4.5 |
| compound, 3.4.1.1.2 | neigbor, 3.4.5.1, 12.1 |
| molecule, 3.4.1.1 | neighbors, 3.4.5 |
| nucleic, 3.4.1.1.4 | crystallography, 3.4.5.4, 3.4.5.6, 3.4.5.7, 12.4, 12.6, 12.7, 23.3.26, 23.3.27 |
| object, 3.4.1.1 | csv, 20.1.2, 20.1.3, 20.1.19 |
| protein, 3.4.1.1.4 | current, 23.3.21 |
| sequence, 3.4.1.1.4 | slide, 7.5 |
| contact, 3.4.7.3, 10, 10.3 | custom, 5.9, 16.2.1, 17.18 |
| areas, 3.4.7.3 | actions, 20.1.31 |
| contour, 3.4.5.6, 3.4.5.7, 12.6, 12.7 | fragments, 17.3 |
| map, 3.4.5.6 | label, 5.5.10 |
| convert, 4.2, 17.6.1, 17.6.5, 23.7.10 | rotation, 5.9.2 |
| 2D to 3D.conformer generator, 22.5.11 | cut, 20.1.26 |
| from table, 22.5.10 | vertical alignment block, 9.2.11 |
| molecule editor, 22.5.9 | damaged skin, 23.10.4 |
| chemical, 16.2.21 | dash, 23.3.11 |
| 2D 3D, 16.5 | data, 4.1.1 |
| local database, 3.4.1.5 | database, 9.3, 16.13, 17.17.2, 18.1.1.2, 18.4.3, 18.4.5, 21.1 |
| pdb chem, 16.5.1 | file format, 18.4.3 |
| smiles to 2D, 23.7.17 | seach and alignment, 9.3 |
| local.database, 3.4.1.5 | databases, 23.7.3 |
| smiles, 17.6, 17.6.3, 17.6.4 | decompose.library, 22.5.21 |
| convert2grid, 3.4.5.7 | decomposition, 17.17.2, 17.17.3 |
| converting pdb, 4.2 | default, 3.1.17 |
| copy, 16.2.22, 16.3.13, 16.10.2, 20.1.26 | delete, 3.2.4, 3.4.2.1, 6.6.7, 23.5.9 |
| cell, 20.1.27 | column row, 20.1.29 |
| chemical, 16.2.22 | label, 5.5.11 |
| paste row, 20.1.26 | all, 3.4.2.2 |
| structure, 16.3.10 | angle.label, 5.6.4 |
| distance.label, 5.6.4 | molecule, 16.2.21 |
| label, 5.5.11 | origin, 5.5.13 |
| row, 20.1.29 | potential, 3.4.3.21 |
| selection, 3.4.2.1 | representations, 3.5.1, 5.1.1 |
| tether, 3.4.16.5, 15.5 | restraints, 5.5.15 |
| deleteall, 3.4.2.2 | ribbon, 5.1.4 |
| density, 3.4.5.4, 3.4.5.6, 3.4.5.7, 12.4, 12.6, 12.7, 23.3.26, 23.3.27 | skin, 5.1.5 |
| depth, 5.2.11 | status, 23.3.31 |
| deselect, 23.3.7 | surface, 5.1.7, 5.2.1 |
| deviation, 23.5.7 | surfaces, 3.5.6 |
| dialog, 6.6.5 | table, 16.2.1 |
| diffuse, 3.5.2 | tethers, 5.5.14 |
| dihedral, 3.4.7.8, 5.5.5, 10.8, 23.3.17 | wire, 5.1.2 |
| angle, 10 | xstick, 5.1.3 |
| dimensional, 23.7.11 | distance, 3.4.7.6, 5.5.12, 5.6, 10, 10.6, 17.14, 23.3.11, 23.5.8, 23.5.10 |
| directories preferences, 3.4.1.15.2 | faq, 23.5.10 |
| directory, 3.4.1.15 | label, 3.4.1.15.7 |
| disappearing labels, 23.10.4 | distances, 3.5.3 |
| display, 3.1.7, 3.1.18, 3.4.1.15, 4.5, 5.5.16, 5.11, 16.2.25, 17.11, 18.1.7.3, 22.1.5, 22.3.3, 23.3.4, 23.3.5, 23.3.8, 23.3.9, 23.3.10, 23.3.16, 23.3.20, 23.3.29, 23.3.31, 23.5.10, 23.5.11, 23.5.20, 23.7.9 | disulfide, 13.9 |
| chemical, 16.2.25 | diverse set, 20.6.4 |
| delete distances, 5.6.4 | dock, 18, 18.1, 18.1.1.2, 18.5, 22.8.1, 22.8.2, 22.9.1, 23.6.3, 23.6.4, 23.6.5, 23.6.6, 23.6.8, 23.6.9, 23.6.11, 23.6.12, 23.6.13, 23.6.14, 23.6.15, 23.6.16, 23.6.17, 23.6.22 |
| dihedral, 5.6.3 | apf, 19.13 |
| distance restraints, 5.5.15 | command, 23.6.17 |
| distance2, 5.6.1 | macrocylce, 23.6.21 |
| angles, 5.6 | docking, 3.4.6.4, 14.4, 18, 18.1.2, 18.1.14, 18.2, 18.2.1, 18.2.2, 18.2.3, 18.4, 18.4.1, 18.4.2, 18.4.5, 18.6, 18.6.1, 18.6.2, 18.6.3, 18.6.4, 18.6.5, 18.6.7, 18.6.8, 18.6.9, 22.7, 22.7.1, 22.7.2, 22.8.3, 22.9, 22.9.2, 23.6, 23.6.1, 23.6.10, 23.6.18, 23.6.19 |
| formal charge, 5.1.10 | explicit group, 22.9.2 |
| gradient, 5.5.18 | docking explicit, 22.9.2.5 |
| hbond, 18.4.9.5 | project, 22.9.2.3 |
| hbonds, 18.4.9.6, 19.4 | receptor setup, 22.9.2.1 |
| hydrogen, 5.1.8 | rotate hydroxyls, 22.9.2.2 |
| mesh, 5.2.2 | run docking, 22.9.2.4 |
| meshes, 5.2.5 | from table, 18.1.9.1, 18.1.9.2 |
| planar angle, 5.6.2 | introduction, 18.1.1 |
| structure, 3.1.8 | macrocycles, 18.1.7 |
| tab, 3.5.1, 23.3.15 | preferences, 18.1.7 |
| tether, 5.5.14 | database scan, 18.1.7.2 |
| toggle, 5.5.17 | display, 18.1.7.3 |
| CPK, 5.1.6 | general, 18.1.7.1 |
| angle, 5.6.2 | start, 18.1.2 |
| chemical, 16.2.1 | template, 18.3 |
| dihedral.angle, 5.6.3 | adjust, 18.1.5 |
| distace, 5.5.12 | background, 23.6.20 |
| distance, 5.5.15, 5.6.1 | batch, 18.1.10 |
| electrostatic, 3.4.3.21 | binding, 18.1.5 |
| energy.gradient, 5.5.18 | conformations, 23.6.21 |
| hydrogen, 5.1.8 | flexible.rings, 23.6.21 |
| polar, 5.1.8 | hitlist, 18.1.13 |
| macroshape, 5.2.3 | interactive, 18.1.9 |
| meshes, 5.2.2 | maps, 18.1.6 |
| and display.macroshape, 3.5.6 | preparation, 18.1.2 |
| project name, 18.1.3 | eds, 3.4.5.4, 3.4.5.6, 3.4.5.7, 12.4, 12.6, 12.7 |
| rank, 18.1.13 | electron, 3.4.5.4, 3.4.5.6, 3.4.5.7, 12.4, 12.6, 12.7, 23.3.26, 23.3.27 |
| receptor setup, 18.1.4 | denisty map, 3.4.5.5, 12.5 |
| results, 18.1.12, 18.1.12.1, 18.1.12.2, 18.1.13 | densitry map.contour, 3.4.5 |
| sampling, 23.6.21 | map, 3.4.1.6, 3.4.5, 18.5 |
| score, 18.1.13 | electrostatic potential, 3.4.3.21 |
| stack, 18.1.12.2 | surface, 5.2 |
| template, 18.3 | electrostatics, 5.2.1, 18.6.7 |
| document, 3.4.1.1.6, 6.6.4, 6.6.5 | elegant sketch, 5.7.4 |
| navigation, 6.6.6 | element, 16.3.6 |
| documents, 5.12.4 | embed browser, 7.3 |
| dollar, 23.9.3 | powerpoint03, 7.1 |
| donator, 16.3.5 | powerpoint07, 7.2 |
| envelope, 3.5.1, 5.1.1 | activeicm, 7.5 |
| surface, 3.4.1.15.5 | script, 7.5 |
| dots, 3.1.10 | browser, 7, 7.3 |
| dotted lines, 3.1.10, 23.3.33 | firefox, 7, 7.3 |
| double, 16.3.6 | internet.explorer, 7, 7.3 |
| download, 23.7.3 | microsoft, 7 |
| drag, 3.1.15, 3.3.6, 3.4.1.15.7, 5.5.3, 6.6.4, 9.4.5, 23.5.5 | powerpoint, 7, 7.1, 7.2 |
| and drop sequences, 9.4.5 | enantiomer, 23.6.22 |
| residue label, 3.4.3.16 | energy, 3.4.6.2, 5.5.16, 14.2, 18.1.12.2, 23.6.1, 23.6.2, 23.8.2 |
| draganddrop, 3.1.15 | circles, 18.4.10 |
| draw, 16.3.13, 17.17.4, 23.7.7 | terms, 3.4.16.12, 15.12 |
| chemical, 16.3.1 | enumerate.reaction, 22.5.22 |
| drop, 3.1.15, 3.3.6, 6.6.4, 9.4.5, 23.5.5 | enumeration, 17.17.2 |
| drug, 17.1, 23.7.12, 23.7.14 | eps, 16.6.4 |
| druglikeness, 16.3.5 | epsilon, 23.5.15 |
| dsPocket, 3.1.12 | errno, 23.1.2 |
| easy rotate, 3.4.3.12 | error, 23.1.2, 23.3.34 |
| edit, 23.7.8 | escaping, 3.1.3 |
| alignment, 9.5.1 | exact, 17.14 |
| chemical, 16.3.8 | excel, 16.7 |
| moledit, 16.2.23 | exclude fragment, 16.9.2 |
| ligand, 19.8 | exit, 3.4.1.18 |
| editor preferences, 19.2 | explicit, 16.2.26, 18.2.1 |
| tools, 3.4.2.17 | flex, 18.2.1 |
| menu, 3.4.2 | group, 18.2.3 |
| molecular document, 6.6.1 | docking, 18.2.3 |
| molecule, 16.3 | groups, 22.9.2 |
| molt, 21.3 | export, 3.4.7.9, 10.10 |
| movie, 8.2.7 | dock project, 19.14 |
| selection, 3.4.2.5 | excel, 16.7 |
| slide, 6.4.1 | extract, 3.3.4, 9.1, 23.5.12, 23.7.13 |
| table row, 20.1.22 | icb, 3.4.1.4 |
| molecule, 16.2.23 | sub alignment, 9.2.10 |
| movie, 8.2.7 | 2D chemical sketch, 16.4 |
| structure, 16.2.23 | icb, 3.4.1.4 |
| editor, 23.5.12 | phrarmacophore, 16.10.4 |
| editpdbsearch, 3.4.2.12 | faq, 23, 23.2, 23.3, 23.3.12, 23.5, 23.6, 23.8, 23.9, 23.9.2 |
| activeicm, 23.4 | icmPocketFinder, 23.6.11 |
| path, 23.4.3 | insert column, 23.7.12 |
| apf model, 23.7.18 | installation, 23.1 |
| atom charge, 23.5.21 | interactions, 23.3.11 |
| display, 23.3.16 | ligandbox, 23.6.10 |
| autosave, 23.3.32 | merge, 23.5.5 |
| backbone, 23.3.12 | molcart 64bit, 23.1.2 |
| background color, 23.3.2 | query, 23.7.6 |
| job, 23.6.20 | sdf, 23.7.4 |
| beep, 23.3.34 | text search, 23.7.16 |
| binding energy, 23.6.2 | molecule c, 23.3.5 |
| blend transition, 23.3.30 | moledit, 23.7.7 |
| breaks, 23.3.33 | movie planes, 23.3.18 |
| change torsion, 23.5.16 | newscript, 23.9.1 |
| chem table display, 23.7.9 | nmr, 23.5.18 |
| chemical monitor, 23.7.15 | nvidia error, 23.1.1 |
| query2, 23.7.5 | origin, 23.3.9 |
| cheminformatics, 23.7 | plist, 23.10.1 |
| clipping plane, 23.3.10 | pmf score, 23.6.7 |
| closest, 23.5.22 | pockets, 23.3.13 |
| color carbon, 23.3.4 | preserve coordinates, 23.7.11 |
| skin, 23.3.15 | quad buffer, 23.2.3 |
| command line display, 23.3.31 | receptor selection, 23.6.15 |
| convert chemical from pdb, 23.5.1 | reload dock, 23.6.5 |
| covalent bond, 23.5.2 | remove salt, 23.7.20 |
| delete, 23.5.9 | select, 23.3.6 |
| deselect, 23.3.7 | renumber, 23.5.4 |
| dihedral, 23.3.17 | residue number selection, 23.3.35 |
| dock charge groups, 23.6.23 | ringflex dock, 23.6.3 |
| probe, 23.6.14 | rmsd, 23.5.7 |
| racemic, 23.6.22 | rmsdtips, 23.5.8 |
| repeat, 23.6.6 | rocking active ppt, 23.4.1 |
| working directory, 23.6.24 | speed, 23.4.2 |
| docking, 23.6 | rotate chemical, 23.7.19 |
| docktime, 23.6.12 | scanScoreExternal, 23.6.18 |
| dollar, 23.9.3 | scanScoreExternal2, 23.6.19 |
| druglikeness, 23.7.14 | score, 23.6.9 |
| energy, 23.6.1 | script, 23.9 |
| error admin, 23.10.2 | simulations, 23.8 |
| extract ligand, 23.7.13 | smiles, 23.7.17 |
| flexible dock, 23.6.16 | solvent accessible surface table, 23.5.19 |
| ring docking, 23.6.21 | ss, 23.5.17 |
| font size, 23.3.1 | structure, 23.5 |
| foreground table, 23.9.4 | superimpose, 23.5.6 |
| gl failure, 23.10.3 | thoroughness, 23.6.13 |
| gui, 23.3 | transparent ribbon, 23.3.3 |
| guided dock, 23.6.4 | truncate mesh, 23.3.14 |
| hardware, 23.2 | view stack, 23.8.2 |
| hitlist, 23.6.8 | weak hydrogen bonds, 23.5.20 |
| iSee, 23.3.29 | write pdb, 23.5.3 |
| faqhbondstrength, 23.3.28 | screen, 3.4.3.8 |
| faqmaps, 23.3.26 | function, 20.1.23, 20.1.24 |
| faqoda, 23.3.25 | functional.groups, 17.3 |
| faqstereo, 23.10.6 | general preferences, 3.4.1.15.5 |
| fasta, 3.3, 3.3.2 | generalselecttools, 3.2.2 |
| field, 4.1.1.4 | generator, 3.4.5.3, 12.3, 17.9 |
| file, 3.4.1.2, 4.1.4 | getting started, 3 |
| close, 3.4.1.12 | glasses, 23.2.2, 23.10.6 |
| compatible, 3.4.1.9 | glutamine proline, 3.4.16.2, 15.2 |
| export, 3.4.1.11 | google, 3.4.1.6 |
| load, 3.4.1.6 | objects, 5.2.4 |
| menu, 3.4.1 | 3D, 3.5.6, 5.2.4 |
| password, 3.4.1.10 | graphical, 1, 23.3.4 |
| quick image, 3.4.1.13 | display, 4.3.1, 4.3.2, 16.5.2, 16.5.3 |
| icb, 3.1.14 | tutorial, 22.1 |
| recent, 3.4.1.16 | 2D3D labels, 22.1.4 |
| bak, 3.4.2.11 | annotation, 22.1.2 |
| filter, 21.2, 23.3.4 | color representation, 22.1.1 |
| selection, 3.2.6 | labels, 22.1.3 |
| tut, 22.1.9 | user interface, 23.3 |
| find, 3.4.7.1 | card, 23.1.1 |
| chemical, 16.2.30 | controls, 5 |
| related chains, 3.4.7.1 | defects, 23.10.4 |
| finding dihedral angle, 3.4.7.8 | effects, 5.7 |
| planar angle, 3.4.7.7 | preferences, 3.4.1.15.3 |
| fingerprint, 23.7.5, 23.7.6 | tips, 3.1.3 |
| firefox, 23.4 | shadow, 3.4.3.13, 5.7.2 |
| fit, 16.2.32, 18.5, 23.6.16 | grid, 16.2.1, 16.2.4, 17.18, 22.9.1, 23.7.9 |
| fitting, 18.5, 20.4.12 | grob, 3.4.1.15.5, 3.4.5.4, 3.4.5.6, 3.4.5.7, 5.2, 12.4, 12.6, 12.7 |
| flex super, 17.18.3 | group, 17.17.3, 19.10 |
| flexibility, 3.4.6.3, 14.3, 18.2.3, 22.9 | groups, 16.12, 17.1, 17.2 |
| flexible, 17.18, 18.2, 18.2.1, 18.2.2, 22.9.1, 23.6.16 | guanidinium, 17.5 |
| ring sampling level, 18.1.7 | gui, 3.4.1.15.4 |
| rings, 23.6.3 | menus, 3.4 |
| fog, 3.4.3.5, 5, 5.7.1 | preferences, 3.4.1.15.4 |
| font, 3.4.1.15, 3.4.1.15.7, 5.5.2, 5.5.3, 16.2.26, 20.1.31, 20.7.3 | tabs, 3.5 |
| preferences, 3.4.1.15.7 | guided docking, 23.6.4 |
| size, 9.5, 23.3.1 | h-bond, 4.5, 22.3.3, 23.3.11 |
| form, 16.2.4 | hardware, 23.2 |
| view, 20.1.5 | stereo, 3.4.3.7 |
| formal, 4.3, 23.5.21 | hbond, 23.3.28 |
| charge, 5.1.10, 17.5 | strength, 23.3.28 |
| format, 20.1.2, 20.1.31 | header, 4.1.8, 20.4.5 |
| formula, 16.3.5, 17.1 | health, 3.4.6.2, 14.2 |
| fragment, 16.2.33, 17.17.3 | helices strands, 3.4.6.1 |
| fragments, 16.12 | helix, 23.3.19 |
| frame, 9.2.3 | hetero, 16.2.26 |
| frequency, 16.2.33 | hidden block format, 9.5.8 |
| front, 5.2.9, 5.10.1 | width, 9.5.8 |
| full scene antialias, 3.4.3.10 | hide, 20.1.30 |
| quality, 3.4.3.11 | plots, 22.1.12 |
| his, 23.5.15 | properties, 16.2.17 |
| histidine, 3.4.16.2, 15.2, 23.5.15 | qsar, 22.5.12 |
| tautomer, 23.5.15 | build model, 22.5.13 |
| histogram, 18.4.9.2, 18.4.9.3, 20.4, 20.4.1, 20.4.5, 20.4.7, 20.4.9, 20.4.10, 20.4.11, 20.4.12, 20.4.13, 20.4.14, 20.4.15, 20.4.17, 22.1.12, 22.1.13 | predict, 22.5.14 |
| bins, 20.4.3 | reactions, 22.5.22 |
| options, 20.4.2 | reorder, 17.12.3 |
| bin.size, 20.4.2 | sdf, 16.2.7 |
| bins, 20.4.3 | show hide, 16.2.6 |
| color, 20.4.2 | smiles, 16.3.11 |
| source, 20.4.2 | sort column, 16.2.3 |
| style, 20.4.2 | standardize, 16.2.16 |
| title, 20.4.2 | table hyperlinks, 16.2.13 |
| hitlist, 18.1.12, 18.1.13, 18.4.8, 18.4.9.1, 18.4.9.3, 18.4.9.7, 23.6.8 | print, 16.2.9 |
| cluster apf, 18.4.9.7 | activeicm, 2.3 |
| homology, 3.4.7.1, 13, 13.1, 13.2, 13.4.1, 13.6, 13.7, 22.4, 22.4.1 | create molecular documents, 2.3.3 |
| loops, 13.5 | slides, 2.3.2 |
| model introduction, 13.1 | getting started, 2.3.1 |
| start, 13.2 | ppt, 2.3.4 |
| modeling, 22.4.2 | web, 2.3.5 |
| 3D editor, 22.6 | chemical clusering, 17.12.1 |
| add columns, 16.2.2 | display, 3.1 |
| change view, 16.2.4 | icm browser convert display pocket, 2.1.4 |
| chemical 2D 3D, 22.5.8 | distances angles, 2.1.9 |
| conformer generator, 22.5.11 | get started, 2.1.1 |
| from table, 22.5.10 | graphical display, 2.1.2 |
| molecule editor, 22.5.9 | effects, 2.1.5 |
| superimpose, 22.5.15 | images, 2.1.7 |
| apf, 22.5.17 | labels annotation, 2.1.6 |
| pairwise, 22.5.18 | pro crystallographic tools, 2.2.6 |
| rigid flexible, 22.5.16 | get started, 2.2.1 |
| cluster center, 17.12.2 | graphics, 2.2.2 |
| color 2D by ph4, 16.10.5 | plots, 2.2.8 |
| copy 2D, 16.2.14 | sequence analysis, 2.2.7 |
| paste, 16.2.5 | structure analysis, 2.2.3 |
| decompose, 22.5.21 | superimpose, 2.2.5 |
| duplicate chemicals, 16.2.18 | surfaces, 2.2.4 |
| edit table, 16.2.15 | selections, 2.1.3 |
| tree, 17.12.4 | superimpose, 2.1.8 |
| excel, 16.2.8 | hrydrogen.bond, 23.3.28 |
| extract 2D, 16.4 | html, 3.4.1.1.6, 3.4.1.11, 6.6.1, 6.6.6, 23.4 |
| 3D ph4, 16.10.4 | html-doc font size, 23.3.1 |
| filter, 16.2.10 | hybridization, 16.3.2, 16.9.1 |
| find replace, 16.2.11 | hydrogen, 4.5, 5.1.9, 16.3.2, 16.9.1, 22.3.3, 23.3.11, 23.7.12, 23.7.15 |
| histogram, 22.1.13 | bond, 5.1.9, 18.4.9.5 |
| mark row, 16.2.12 | donor, 17.20.1 |
| markush, 22.5.20 | bond, 16.3.5, 23.5.20 |
| structure, 22.5.19 | hydrogens, 16.2.26 |
| merge tables, 16.2.20 | remove, 16.2.16 |
| plot, 22.1.14 | hyperlink, 6.6.1, 6.6.2, 20.1.31 |
| iSee, 3.1.14, 3.4.1.1.6, 3.4.1.4, 3.4.1.11, 5.12.4, 22.1.11, 23.3.29, 23.3.30, 23.4.3 | interface, 1 |
| icb, 23.3.29, 23.4.3 | internet explorer, 23.4 |
| icm, 23.4.3 | interrupt, 6.1.3 |
| chemist howto chemical search, 2.4.3 | animation, 6.1.3 |
| cluster, 2.4.5 | introduction, 1 |
| combi library, 2.4.7 | invert selection, 20.1.21 |
| ph4, 2.4.4 | invisible residue label, 23.10.4 |
| plots, 2.4.8 | isee, 6.6.5 |
| sketch, 2.4.1 | isis, 16.3.13 |
| spreadsheets, 2.4.2 | isotope, 16.3.2, 16.9.1 |
| stereoisomers tautomers, 2.4.6 | iupac, 16.8 |
| pro 3D ligand editor, 2.5.1 | job, 23.6.20 |
| chem3D, 2.5.2 | jobs, 18.4.6 |
| chemsuper, 2.5.3 | join, 17.15 |
| qsar, 2.5.4 | jpg, 5.12, 5.12.1 |
| tutorials, 2.5 | means, 20.7 |
| tutorials, 2.4 | keep carboxyls neutral, 18.1.7 |
| hanging, 23.10.5 | chemical, 16.3.6 |
| script, 20.1.31 | keyboard mouse, 5.8 |
| icm-crash, 23.10.5 | keystokes in chem-edit, 16.3.6 |
| icmFastAlignment, 9.3 | kinase build model, 22.4.2.3 |
| icmPocketFinder, 3.4.6.5, 14.5, 23.3.13, 23.6.11 | model loop, 22.4.2.4 |
| image, 3.1.19, 3.4.1.15, 3.4.1.15.5, 5.12.1, 5.12.2, 5.12.3, 5.12.4, 6.6.3, 16.6, 16.6.4, 20.4.16 | kinasemod, 22.4.2 |
| advanced, 5.12.3 | search, 22.4.2.1 |
| clipboard, 5.12.2 | sequence alignment, 22.4.2.2 |
| preferences, 3.4.1.15.6 | kmz, 3.5.6, 5.2.4 |
| multiple, 3.4.1.6 | label, 3.4.1.15.7, 20.7.3, 23.3.16 |
| quality, 3.4.3.11 | annotation, 5.5.8 |
| quick, 3.4.1.13 | atoms, 5.5.2 |
| images, 5.12 | color, 5.5.9 |
| in-a-window, 23.2.3 | move, 5.5.4 |
| index, 23.7.16 | residues, 5.5.3 |
| induced, 23.6.16 | sites, 5.5.6 |
| fit, 18.2, 18.2.1, 18.2.3, 22.9, 22.9.1 | variables, 5.5.5 |
| insert, 6.6.4 | 2D, 3.5.3 |
| column, 20.1.23 | 3D, 3.5.3, 5.5.1 |
| image, 6.6.3 | annotation, 5.5.8 |
| row, 20.1.25 | atom, 5.5.1 |
| script, 6.6.4 | atoms, 5.5.2 |
| install, 1, 16.13.1, 23.1.2, 23.1.3 | color, 5.5.9 |
| installation, 23.1 | custom, 5.5.10 |
| interactio, 23.6.2 | delete, 5.5.1, 5.5.11 |
| interaction, 3.4.7.3, 10.3, 23.3.11 | distance, 5.5.12 |
| interactive, 18.1.9, 22.1.11 | drag, 3.4.3.16 |
| loaded ligand, 18.1.9.2 | move, 3.4.3.16, 5.5.4 |
| loop, 13.4.3 | residue, 5.5.1 |
| make, 13.4.1 | residues, 5.5.3 |
| modeling, 13.4, 13.4.1 | site, 5.5.1 |
| table ligand, 18.1.9.1 | sites, 5.5.6 |
| modeling, 13.4 | variable, 5.5.1 |
| labeling, 5.5.1 | link, 9.2.9 |
| labels, 5.5, 16.2.26 | structure to alignment, 22.2 |
| distances, 5.5.12 | linker, 19.9 |
| tab, 3.5.3 | links, 3.2.15 |
| landscape, 3.4.1.15.6 | linux, 16.13.1 |
| large font size, 23.10.1 | load, 3.3, 3.3.2, 3.4.1.2, 3.4.1.16, 3.4.5.4, 3.4.5.6, 3.4.5.7, 4.1.4, 9.1, 12.4, 12.6, 12.7 |
| lasso, 22.1.6, 22.1.7 | eds, 3.4.5.4 |
| layer, 5.11 | example alignment, 9.2.14 |
| layers, 5.11 | nmr model, 4.1.5 |
| learn, 17.7, 17.8, 20.6, 20.6.1, 23.7.18 | pdb, 4.1.4 |
| learning, 20.6 | hyperlinks, 4.1.7 |
| theory, 20.6.3 | sequence, 9.1 |
| least.squares, 20.4.12 | extract pdb, 9.1.3 |
| library, 17.17.2 | from file, 9.1.4 |
| reaction, 22.5.22 | paste, 9.1.2 |
| license, 23.1.3 | swissprot, 9.1.1 |
| ligand, 18.1.1.2, 18.2, 18.6.5, 18.6.6, 23.5.5, 23.5.11, 23.6.2, 23.6.10, 23.7.13 | libraries, 3.4.16.6, 15.6 |
| based screen, 17.20.3 | pdb, 4.1.3 |
| best replace, 19.10 | sequence, 3.3.1 |
| code, 4.1.1.3 | local, 23.3.23, 23.3.24 |
| editor, 19, 19.13 | databases, 21 |
| mrc, 19.12 | flexibility, 3.4.6.3 |
| preferences, 3.4.2.18 | database.browse, 21.2 |
| linker, 19.9 | edit, 21.3 |
| pocket, 23.5.11 | query, 21.4 |
| surface, 19.3.2 | row, 21.3 |
| tether, 19.11 | localpdb, 23.3.23 |
| ligand-based screen, 22.5.18 | localseq, 23.3.24 |
| convert, 3.4.16.1, 15.1 | lock, 5.2.9, 5.10.1, 16.2.29 |
| editor, 19, 19.1, 19.9 | log, 20.4.7 |
| binding.re-dock ligand, 19.6 | logP, 16.3.5, 17.1 |
| display, 19.3 | logS, 16.3.5, 17.1 |
| edit, 19.8 | logarithmic, 20.4.7 |
| energy, 19.3 | logout, 3.4.1.18 |
| hydrogen.bond, 19.3 | loop, 13.6, 23.3.19 |
| pocket, 19.3 | model, 13.6, 22.4.3 |
| preferences, 19.2 | tutorial, 22.4.3 |
| restraint, 19.11 | modeling, 13.4.3 |
| surface, 19.3 | model, 3.4.16.8, 15.8 |
| tether, 19.11 | sample, 3.4.16.8, 15.8 |
| optimization, 22.8.3 | mac, 16.13.1, 23.10.1 |
| pocket, 3.1.12 | macros, 7.6 |
| receptor.contact, 3.4.7.3, 10.3 | macroshape, 3.4.3.22, 5.2, 5.2.3 |
| ligedit tab, 3.5.5 | make, 3.4.1.1.1, 3.4.1.1.7, 6.1.1, 20.1.1 |
| light, 3.5.2 | animation, 6.1.1 |
| tab, 3.5.2 | complex, 18.4.9.6 |
| lighting, 5.4 | flat, 23.7.19 |
| likeness, 17.1, 23.7.14 | images, 5.12 |
| line, 3.4.1.15.5, 20.7.3, 23.3.11 | molecular document, 6.6 |
| lineWidth, 3.4.1.15.3 | molt, 21.1 |
| receptor maps, 18.1.6 | local, 3.4.16.7, 15.7 |
| selection, 3.2 | mmff, 3.4.16.6, 15.6, 23.3.16, 23.7.10 |
| DNA, 3.4.1.1.3 | type, 5.5.2 |
| RNA, 3.4.1.1.3 | mnSolutions, 3.4.1.15.10 |
| bond, 23.5.2 | model, 13, 13.1, 13.2, 13.3, 13.6, 13.7, 22.4, 22.4.1 |
| chemical, 3.4.1.1.2 | loop, 13.5 |
| compound, 3.4.1.1.2 | modelers view, 13.4.2 |
| disulfide, 13.9, 23.5.17 | view, 13.4.2 |
| molecule, 3.4.1.1 | modeling, 3.4.16.3, 15.3 |
| object, 3.4.1.1 | modeller view, 13.4 |
| sequence, 3.4.1.1.4 | mol, 16.6, 16.6.1, 16.6.2, 16.6.3, 16.6.4, 22.8.2 |
| making molecular slides, 6.2 | mol2, 16.6, 16.6.1, 16.6.2, 16.6.3, 16.6.4 |
| html, 6.6 | molcart, 16.13, 16.13.1, 16.13.2, 16.13.3, 16.13.4, 21, 23.1.2, 23.7, 23.7.3, 23.7.4, 23.7.5, 23.7.6, 23.7.16 |
| color, 20.4.10 | administration, 16.13.4 |
| map, 3.4.1.15.7, 3.4.5.4, 3.4.5.6, 3.4.5.7, 12.4, 12.6, 12.7 | connect, 23.7.2 |
| cel, 3.4.5.5, 12.5 | download dbs, 23.7.3 |
| maps, 18.6.7, 22.9.1, 23.3.26, 23.3.27, 23.6.10 | hostid, 23.7.1 |
| cell, 3.4.5.5 | installation, 16.13.1 |
| mark, 20.1.34 | license, 23.1.3 |
| row, 20.1.34 | search, 16.13.3 |
| shape, 20.4.9 | start, 16.13.2 |
| size, 20.4.9 | connect, 23.7.2 |
| markush, 17.17.1, 17.17.3, 22.8.3 | hostid, 23.7.1 |
| docking, 22.8.3 | license, 23.7.1 |
| library, 22.5.20 | molclart, 23.1.3 |
| mass, 23.5.22 | molecular, 16.2.28, 16.2.29, 16.2.32, 16.2.33, 17.9, 23.7.12, 23.7.15 |
| materials, 3.5.6 | animations slides, 6 |
| max, 20.7 | transitions, 6.1 |
| maxColorPotential, 3.4.1.15.10 | document, 3.4.1.1.6 |
| mean, 23.5.7 | documents, 22.1.11 |
| menu, 6.6.5 | editor, 23.7.7 |
| chemistry, 3.4.14 | copy, 16.3.10 |
| docking, 3.4.15 | cut, 16.3.10 |
| homology, 3.4.13 | paste, 16.3.10 |
| molmechanics, 3.4.16 | redo, 16.3.12 |
| tools chemical search, 3.4.11 | selections, 16.3.9 |
| molecular editor, 3.4.12 | undo, 16.3.12 |
| windows, 3.4.17 | graphics, 5 |
| merge, 17.15, 23.5.5 | molecule representation, 5.1 |
| two sets, 17.15 | mechanics, 15 |
| mesh, 3.4.5.4, 3.4.5.6, 3.4.5.7, 4.4, 5.2, 5.2.7, 5.2.9, 5.2.10, 5.2.11, 5.10.1, 12.4, 12.6, 12.7 | convert, 15.1 |
| clip, 5.2.9 | edit structure, 15.5 |
| options, 5.2.6 | gamess, 15.11 |
| save, 5.2.10 | generate normal mode stack, 15.9 |
| options, 5.2.6 | his asn, 15.2 |
| meshes surfaces grobs, 5.2 | impose conformation, 15.4 |
| tab, 3.5.6 | minimize, 15.7 |
| min, 20.7 | mmff, 15.6 |
| minimize.cartesian, 3.4.16.7, 15.7 | regularization, 15.3 |
| global, 3.4.16.7, 15.7 | sample loop, 15.8 |
| view stack, 15.10 | preview, 8.2.8 |
| modeling, 13 | resolution, 8.2.1 |
| table, 17.6.2 | rock, 8.2.6 |
| weight, 16.3.5 | rotate, 8.2.5 |
| molecule, 23.3.8, 23.7.8 | scene, 8.2.2 |
| editor, 16.3 | still, 8.2.3 |
| molecules, 3.4.7.1 | tween, 8.2.4 |
| moledit, 16.3.4 | mpeg, 8, 8.1 |
| molmech icmconv, 3.4.16.1 | mpg, 8 |
| molmechaincs gamess, 3.4.16.11 | multi apf super, 17.19.3 |
| molmechanics, 23.8.2 | multiple, 18.2.2, 22.9.1 |
| edit structure, 3.4.16.5 | rec, 18.2.2 |
| generate normal mode stack, 3.4.16.9 | receptor, 22.9 |
| his asn, 3.4.16.2 | docking, 19.12 |
| impose conformation, 3.4.16.4 | protein, 23.3.5 |
| minimize, 3.4.16.7 | mutant, 23.5.13, 23.5.14 |
| mmff, 3.4.16.6 | mutate, 23.5.15 |
| regularization, 3.4.16.3 | residue, 23.5.13 |
| sample loop, 3.4.16.8 | N C, 23.5.14 |
| terms, 3.4.16.12 | mutation, 23.5.13, 23.5.14 |
| view stack, 3.4.16.10 | navigate workspace, 3.2.8 |
| minimize, 3.4.16.7, 15.7 | nearest, 23.5.22 |
| mmff, 3.4.16.6, 15.6 | neighbors, 22.1.8 |
| molt, 21, 21.4 | new, 3.3, 3.3.3, 3.4.1.1.1, 9.1 |
| monitor, 23.7.15 | compound, 3.4.1.1.2 |
| monochrome, 16.2.26 | dna, 3.4.1.1.3 |
| montecarlo, 23.8.1 | peptide, 3.4.1.1.1 |
| mouse, 3.1.2, 5.8, 5.9 | protein, 3.4.1.1.4 |
| mov, 8, 8.1 | table, 20.1.1 |
| move, 3.1.15, 3.1.17, 3.4.3.19, 5.2.7, 5.9, 5.9.7, 23.5.5 | chemical, 3.4.1.1.2 |
| resize mesh, 5.2.7 | compound, 3.4.1.1.2 |
| slide, 6.4.2 | dna, 3.4.1.1.3 |
| structure, 5.9 | protein, 3.4.1.1.4 |
| tools, 5 | rna, 3.4.1.1.3 |
| rotate, 5.8 | script, 3.4.1.1.5 |
| slab, 5.8 | table, 3.4.1.1.7, 20.1.1 |
| translate, 5.8 | nmr, 23.5.18 |
| z-rotation, 5.8 | model, 4.1.5 |
| zoom, 5.8 | normal modes, 3.4.16.9, 15.9 |
| movie, 3.5.7, 8.1, 8.2, 23.3.18, 23.8.1 | notations, 1 |
| directory, 8.2.1 | numbers, 16.2.26 |
| montecarlo, 23.8.1 | nvidia, 23.1.1 |
| scene, 8.2.2 | object, 3.1.15, 3.4.1.8.1, 3.4.1.8.2, 22.3, 23.3.8 |
| tab, 3.5.7 | objects, 4.2 |
| directory, 8.2.1 | in table, 20.3 |
| edit, 8.2.7 | in.table, 20.3 |
| export, 8.2.8 | occlusion, 5.2.11 |
| making, 8 | shading, 5.2.11 |
| open, 8 | occupancy, 22.3.6 |
| powerpoint, 8.1 | display, 4.1.6 |
| older version, 3.4.1.9 | draw3D, 16.10.2 |
| omega, 5.5.5, 23.3.17 | edit, 16.10.1, 16.10.2 |
| open, 3.4.1.2, 20.1.2 | move, 16.10.2 |
| with password, 3.4.1.3 | new, 16.10.2 |
| movie, 8 | search, 16.10, 16.10.3, 22.5.6, 22.5.7 |
| password, 3.4.1.3 | phi, 5.5.5, 23.3.17 |
| optimal, 3.4.6.4, 14.4, 18.6, 18.6.1, 18.6.2 | phylogenetic, 9.5.4 |
| optimize, 3.4.16.2, 15.2 | phylogeny, 9.5.4 |
| origin, 5.5.13, 23.3.9 | pick, 22.1.6, 22.1.7 |
| other selection, 3.2.14 | picking, 5 |
| outside, 23.6.10 | atoms, 3.1.3 |
| overlay, 23.3.5, 23.5.6 | residues, 3.1.3 |
| package.activeicm, 7.5 | picture, 3.1.19, 3.4.1.13, 6.6.3 |
| packing, 3.4.5.1, 12.1 | tips, 3.1.19 |
| pairwise, 17.19.1, 17.19.2 | planar, 3.4.7.7, 5.5.5, 10.7, 23.3.17 |
| apf score, 17.20 | angle, 10 |
| parallelization, 18.4.7 | angle, 5.6.2 |
| password, 16.13.4 | plane, 5.2.9, 5.10, 5.10.1, 5.11, 23.3.10, 23.3.18, 23.3.20 |
| paste, 16.3.13, 20.1.26 | faq, 23.3.20 |
| pbs, 18.4.6 | plot, 3.4.1.15, 3.4.1.15.8, 18.4.9.2, 20.4, 20.4.1, 20.4.4, 20.4.5, 20.4.7, 20.4.9, 20.4.10, 20.4.11, 20.4.12, 20.4.13, 20.4.14, 20.4.15, 20.4.16, 20.4.17, 22.1.12, 22.1.14 |
| pca, 20.5 | axis, 20.4.7 |
| pdb, 3.3.4, 3.4.1.6, 4.1.1, 4.1.1.3, 4.3, 16.5.1, 22.3, 23.3.23, 23.3.24, 23.5.4 | color, 20.4.10 |
| chem gl, 16.5.3 | function, 3.4.9, 3.4.9.1 |
| iw, 16.5.2 | grid, 20.4.11 |
| file, 23.5.3 | header, 20.4.5 |
| html, 4.1.8 | inline, 20.4.17 |
| preparation, 22.3.7 | logarithmic, 20.4.8 |
| search, 4.1 | mark, 20.4.9 |
| hyperlinks, 4.1.7 | preferences, 3.4.1.15.8 |
| sensitive query, 4.1.2 | regression, 20.4.12 |
| convert, 3.4.16.1, 15.1 | selection, 20.4.14 |
| recent, 3.4.1.17 | zoom translate, 20.4.13 |
| search, 3.1.1, 3.5.4, 4.1.3 | axis, 20.4.11 |
| table, 4.1.3 | display, 20.4.11 |
| pdbsearchfield, 3.4.2.13 | grid, 20.4.11 |
| pdbsearchhomology, 3.4.2.15 | inline, 20.4.17 |
| pdbsearchidentity, 3.4.2.14 | logarithmic, 20.4.8 |
| pdbsearchresults, 4.1.3 | pls, 17.7, 17.8, 20.6 |
| pdbsearcsequence, 3.4.2.16 | pmf, 23.6.7 |
| peptides, 3.4.1.1.1 | png, 3.4.1.13, 5.12, 5.12.1, 6.6.3, 16.6, 16.6.4 |
| perspective, 3.4.3.9, 5.7.5 | pocket, 3.1.12, 3.4.6.5, 4.4, 14.5, 18.1, 23.3.13, 23.5.11, 23.6.11 |
| ph4, 16.10 | conservation, 23.5.12 |
| draw 2d, 16.10.1 | display, 19.3 |
| 3d, 16.10.2 | surface, 18.4.10 |
| search, 16.10.3 | peptide, 3.1.12 |
| pharmacophore, 16.2.33, 16.10.5 | properties, 3.1.12 |
| 2D, 22.5.7 | portait, 3.4.1.15.6 |
| 3D, 22.5.6 | post screen, 18.4.9 |
| clone, 16.10.2 | postscript, 3.4.1.15.6 |
| draw2D, 16.10.1 | potential mean force, 18.4.4 |
| ppbatch, 18.6.8 | rama export, 10.10 |
| ppepitope, 18.6.6 | ramachandran plot, 10.9 |
| ppmaps, 18.6.7 | rmsd, 10.2 |
| pprefine, 18.6.10 | surface area, 10.5 |
| ppresults, 18.6.9 | tutorials, 22.3 |
| pproc, 18.6.2 | superposition, 11 |
| ppsetligand, 18.6.5 | select superposition, 11.1 |
| ppsetproject, 18.6.3 | superimpose 3D, 11.3 |
| ppsetreceptor, 18.6.4 | grid, 11.5 |
| ppt, 7.4, 7.6, 23.4.3 | multiple proteins, 11.4 |
| predict, 9.2.2, 17.7, 17.8, 20.6, 20.6.2, 23.7.14, 23.7.18 | protein-protein, 3.4.6.4, 14.4, 18.6, 18.6.1, 18.6.2, 18.6.3, 18.6.4, 18.6.5, 18.6.7, 18.6.8, 18.6.9 |
| predicting bioassays, 20.6.2 | docking refinement, 18.6.10 |
| compound properties, 20.6.2 | protein-proteindocking, 18.6.6 |
| preferences, 3.4.1.15, 23.3.23, 23.3.24 | convert, 3.4.16.1, 15.1 |
| presentatio, 6.6.5 | protonated, 23.5.15 |
| presentation, 7, 7.4 | protprot, 18.6 |
| presentations, 6 | psa, 16.3.5 |
| preserve, 23.7.11 | psi, 5.5.5, 23.3.17 |
| press-and-hold to rotate, 16.3.4 | pubmed, 4.1.9 |
| preview export movie, 8.2.8 | purple box, 3.4.3.23 |
| primary aliphatic amines, 17.5 | qs convert chemical from pdb, 4.3 |
| principal component analysis, 20.5 | ddali, 3.3.6 |
| components, 20.6.3 | hydrogen bond, 4.5 |
| print, 20.4.15, 20.7.2 | pdb chem gl, 4.3.2 |
| plot, 20.4.15 | iw, 4.3.1 |
| printer.resolution, 3.4.1.15.6 | quick pocket, 4.4 |
| probe, 23.6.14 | selection, 22.1.6 |
| problem, 23.10.6 | ws, 22.1.7 |
| problems, 23.10 | ali, 3.3 |
| with selection, 23.10.4 | fasta, 3.3.2 |
| project, 3.4.1.4, 18.6.3 | load, 3.3.1 |
| name, 18.1.3 | new, 3.3.3 |
| close, 3.4.1.12 | pdb, 3.3.4 |
| rename, 3.4.1.8 | qsar, 17.7, 17.8 |
| propagate, 22.1.10 | learn predict, 17.7 |
| properties, 5.5.2, 17.1, 23.7.12 | predict, 17.8 |
| property, 16.3.5, 23.7.12, 23.7.13, 23.7.14, 23.7.15 | quad.buffer, 23.2.3 |
| expression, 18.4.9.6 | quality, 3.4.1.14, 3.4.1.15.5 |
| monitor, 16.3.5 | query, 13.3, 23.7.5, 23.7.6, 23.7.16 |
| protect, 6.6.7 | molt, 21.4 |
| protein, 9, 23.5.5 | pdb, 4.1.1.1 |
| health, 3.4.6.2, 14.2 | field, 4.1.1.4 |
| structure, 4 | ligand code, 4.1.1.3 |
| analysis, 10 | sequence, 4.1.1.2 |
| closed cavities, 10.4 | processing, 16.9.3 |
| contact areas, 10.3 | setup, 16.9.1 |
| distance, 10.6 | quick, 3.1.19 |
| find related chains, 10.1 | start chain breaks, 3.1.10 |
| finding dihedral angle, 10.8 | move structure, 3.1.2 |
| planar angle, 10.7 | read pdb, 3.1.1 |
| selection, 3.1.4 | reloadingobjectrunning, 3.4.1.8.1 |
| level, 3.1.5 | remove, 3.1.10, 23.3.6, 23.3.7, 23.3.9 |
| sequence alignment, 3.3.5 | salt, 23.7.20 |
| what is selected, 3.1.6 | explixit.hydrogens, 17.2 |
| dispalay.distance, 5.6.1 | salt, 17.2 |
| start color, 3.1.11 | rename project, 3.4.1.8 |
| quit, 3.4.1.18 | renumber, 23.5.4 |
| group, 17.17.2 | replace chemical, 16.2.30 |
| racemic, 16.2.26, 17.6.5, 23.6.22 | replacement, 19.10 |
| radius, 22.1.8 | representation, 3.4.3.19 |
| rainbow, 3.4.1.15.5, 5.5.17, 16.2.33 | residue, 3.4.1.15.7, 23.3.8, 23.5.15, 23.5.22 |
| rama export, 3.4.7.9 | alternative orientaiton, 22.3.7 |
| ramachandran plot, 3.4.7.9, 10, 10.10 | content, 9.2.1 |
| range, 6.1.2 | number selection, 23.3.35 |
| ratio.selection, 3.4.1.15.5 | propagate, 22.1.10 |
| dock ligand, 19.6 | content, 3.4.4, 9.2, 9.2.1 |
| reactions, 16.12, 17.17.4 | mutate, 23.5.13, 23.5.14 |
| read, 3.4.1.2, 3.4.1.8.1, 3.4.1.16, 4.1.1, 4.1.4, 9.1 | residues, 4.4, 23.3.13 |
| chemical, 16.1.1 | resize, 5.2.7, 5.12.3 |
| table, 20.1.2 | resolution, 4.1.1.4 |
| pdb, 3.1.1, 4.1.3 | restore, 3.4.2.11, 5.2.9, 5.10.1 |
| sequence, 3.3.1 | default, 23.10.1 |
| table, 20 | recent backup, 3.4.2.11 |
| reagent, 17.17.4 | results, 18.6.9 |
| rear, 5.2.9, 5.10.1 | stack, 18.1.12.2 |
| recent files, 3.4.1.16 | review and adjust binding site, 18.1.5 |
| pdb codes, 3.4.1.17 | rgroup, 17.17.2 |
| receptor, 18.2.2, 18.6.4, 18.6.6, 22.9.1, 23.6.2, 23.6.15, 23.6.16 | ribbon, 3.1.10, 3.4.1.15.9, 3.5.1, 5.1.1, 5.1.4, 23.3.22, 23.3.33 |
| flexibility, 19.12 | as a mesh object, 23.3.3 |
| from pdb, 18.1.1.1 | faq, 23.3.22 |
| pocket, 19.3.1 | preferences, 3.4.1.15.9 |
| surface, 19.3.1, 19.3.2 | style, 3.4.1.15.9 |
| flexibility, 22.9.2 | breaks, 5.1.4 |
| recover, 3.4.2.11 | cylinders, 5.1.4 |
| rectangle, 22.1.6, 22.1.7 | smooth, 5.1.4 |
| redo, 3.4.2.10, 16.3.12 | worm, 5.1.4 |
| refine, 13.7, 13.8 | ribbonColorStyle, 3.4.1.15.9 |
| side chain, 13.8 | right, 3.1.16 |
| region, 18.6.6 | click, 3.1.16 |
| regresion, 20.4.12 | rigid, 17.18 |
| regression, 20.6.1, 20.6.3 | super, 17.18.2 |
| regul, 13.7 | table, 17.18.1 |
| regularization, 3.4.16.3, 13.7, 15.3 | ring, 16.3.2, 16.9.1 |
| related, 3.4.7.1 | rings, 16.2.26, 17.9, 17.18 |
| relationship, 20.6 | rmsd, 3.4.7.2, 10, 10.2, 23.5.7, 23.5.8 |
| covalent geometry, 18.1.7 | rock, 3.4.3.15, 5.7.6, 6, 6.1, 6.1.1, 8.2.6 |
| release, 1 | speed, 6.1.2 |
| reload, 3.4.1.8.1, 3.4.1.8.2, 18.1.14, 23.6.5 | root, 23.5.7 |
| dock results, 18.1.14 | mean square deviation, 3.4.7.2, 10.2 |
| reloading object not running, 3.4.1.8.2 | rotate, 3.1.2, 3.4.3.15, 5, 5.7.6, 5.9, 5.9.1, 5.9.2, 6, 6.1, 6.1.1, 8.2.5, 16.2.32, 23.7.19 |
| when pasting, 16.3.4 | sdf, 16.2.33, 16.6, 16.6.1, 16.6.2, 16.6.3, 16.6.4, 16.13, 17.6.1, 21.1, 22.8.2, 23.7.3, 23.7.4 |
| easy, 3.4.3.12 | search, 4.1.1.3, 16.13, 16.13.3, 21.2, 23.7.16 |
| speed, 6.1.2 | filter, 16.9.2 |
| rotating fragment in editor, 16.3.4 | in workspace, 3.4.2.4 |
| rotation, 3.1.3, 5.9.1 | pdb, 4.1.1.2, 4.1.1.4 |
| row, 20, 20.1.20, 20.1.26, 20.1.34 | in.workspace, 3.4.2.4 |
| flag, 20.1.11 | secondary aliphatic amines, 17.5 |
| mark, 20.1.11 | structure, 3.4.6.1, 14.1, 23.3.19 |
| hide, 16.2.6 | sctructure, 9.2.2 |
| show, 16.2.6 | structure, 3.4.4, 5.1.4, 9.2 |
| ruler, 5.5.17 | select, 20, 20.1.34, 23.5.22 |
| rundock, 23.6.17 | a tree branch, 20.7.1 |
| safari, 23.4 | amino acid, 3.2.10 |
| salts, 16.2.16 | chemical, 16.3.9 |
| sample, 17.18 | duplicates, 17.16 |
| double bond cis trans, 18.1.7 | neighbors, 3.2.11 |
| racemic centers, 18.1.7 | graphic, 3.2.12 |
| save, 5.2.10, 5.12.1, 6.1.4, 20.4.16, 20.7.2, 23.3.32 | object, 3.2.9 |
| chemical, 16.3.7 | superposition, 3.4.8.1 |
| docked ligand, 19.7 | tree, 20.7.1 |
| image, 5.12.1 | atom, 3.1.4, 3.1.5, 3.1.6 |
| plot, 20.4.16 | graphical, 3.1.4, 3.1.5, 3.1.6 |
| ligand receptor complex, 19.7 | object, 3.1.4, 3.1.5, 3.1.6 |
| object, 3.1.13 | purple.box, 3.4.3.23 |
| print delete alignment, 9.5.2 | residue, 3.1.4, 3.1.5, 3.1.6 |
| project icb, 3.1.14 | workspace, 3.1.4, 3.1.5, 3.1.6 |
| slide, 6.4 | selectall, 3.4.2.3 |
| table, 20.1.19 | selecting.neighbors, 3.2.12 |
| tree, 20.7.2 | selection, 20.4.14, 20.7.1, 20.7.3, 22.1.5, 22.1.6, 22.1.7, 23.3.4, 23.3.6, 23.3.7, 23.3.8, 23.3.12, 23.3.31, 23.5.9, 23.5.10, 23.5.22, 23.6.15 |
| image, 3.1.19, 3.4.1.14 | clear, 3.4.2.7 |
| object, 3.1.13 | neighbors, 3.4.2.8 |
| password, 3.4.1.10 | toolbar, 3.2.1 |
| picture, 3.4.1.14 | alignment, 3.2.14 |
| project, 3.1.14, 3.4.1.7, 3.4.1.8, 3.4.1.9 | all, 3.4.2.3 |
| table.view, 20.1.6 | alter, 3.2.5 |
| saving, 3.4.1.7 | amino, 3.2.10 |
| project, 3.4.1.7 | atom, 3.2.1, 3.4.2.5 |
| scaffold, 17.4 | basic, 3.2.3 |
| scale, 3.4.1.15.5 | change, 3.2.5 |
| scan, 18.1.12.1 | clear, 3.4.2.7 |
| hits, 18.1.12.1 | column, 20.1.21 |
| scatter, 18.4.9.2 | filter, 3.2.6, 3.4.2.5, 22.1.9 |
| scatterplot, 18.4.9.4 | graphical, 3.2.1, 3.2.12 |
| score, 18.4.8, 23.6.8, 23.6.9, 23.6.19 | invert, 3.4.2.6, 20.1.21 |
| threshold, 18.4.4 | lasso, 3.2.1 |
| screen, 17.20, 22.7, 22.8.1 | level, 3.4.3.3 |
| screening, 18.4, 18.4.1, 18.4.2, 22.9 | mode, 3.4.3.4 |
| screenshot, 8 | near atoms, 3.4.2.8 |
| movie, 8.1 | neighbors, 3.2.11, 3.2.13, 3.4.2.5, 3.4.2.8 |
| script, 3.4.1.1.5, 6.6.4, 6.6.5, 23.5.19, 23.9, 23.9.1, 23.9.2, 23.9.3 | object, 3.2.9 |
| pick, 3.2.1 | shell preferences, 3.4.1.15.10 |
| properties, 3.4.2.5 | shift, 5.5.3 |
| range, 20.1.21 | shine, 3.4.1.15.5, 3.5.2 |
| residue, 3.4.2.5, 22.1.10 | shineStyle, 3.4.1.15.3 |
| row, 20.1.21 | show, 6.3.1, 20.1.30 |
| sphere, 3.2.11 | hide column, 20.1.30 |
| spherical, 3.4.2.8, 22.1.8 | side, 16.2.27 |
| superposition, 3.4.8.1, 11.1 | by side, 16.2.27 |
| table, 3.2.14, 20.1.21 | stereo, 3.4.3.6 |
| elements, 20.1.21 | chains, 13.8 |
| toolbar, 3.2.1 | side-chain sampling, 18.6.10 |
| tools, 3.2.2, 3.2.3, 3.2.5, 3.2.6 | side-chains, 18.2.1 |
| whole, 3.2.9 | sigmaLevel, 3.4.5.6, 3.4.5.7, 12.6, 12.7 |
| workspace, 3.2.7, 3.2.13 | similar, 3.4.7.1 |
| selectioninvert, 3.4.2.6 | similarity, 17.14 |
| selections, 3.2 | simulation, 23.8.2 |
| links, 9.2.9 | simulations, 23.8 |
| selectneighbors workspace, 3.2.13 | single, 16.3.6 |
| sequence, 3.3.1, 3.3.2, 3.3.3, 3.3.4, 3.3.6, 3.4.4, 4.1.1.2, 5.5.7, 9, 9.1, 9.2, 9.2.8, 13.3, 22.2, 22.3, 23.5.12 | sites, 5.5.7 |
| analysis, 9.2 | sketch accents, 5.7.3 |
| reordering, 9.5.4 | accents, 3.4.3.14, 5.7.3 |
| structure, 9.2.6 | skin, 3.5.1, 5.1.1, 5.1.5, 23.3.15 |
| type, 9.2.4 | slab, 5.2.9, 5.10.1 |
| DNA, 9.2.4 | slice, 5.10 |
| alignment, 3.3.5, 9.2.5, 9.4.5 | slide, 6.1.4, 6.3.1, 6.6.1, 23.3.30 |
| nucleotide, 9.2.4 | effects, 6.5 |
| protein, 9.2.4 | navigation, 6.3.2 |
| search, 9.3 | show, 6.3 |
| structure.alignment, 9.2.6 | blend, 6.5 |
| sequences, 3.3, 4.1.1, 9, 23.3.24 | edit, 6.4.1 |
| unique, 9.2.13 | effect, 6.5 |
| extract, 9.2.13 | smooth, 6.5 |
| unique, 9.2.13 | transition, 6.5 |
| set, 16.2.29, 23.5.21 | slides, 6, 6.2, 6.3, 23.3.29 |
| formal charges, 17.5 | smiles, 16.1.1, 16.3.5, 17.1, 17.6, 17.6.3, 17.6.4 |
| bond type, 3.4.16.5, 15.5 | solvent.accessible.area, 23.5.19 |
| charges, 3.4.16.6, 15.6 | sort hitlist, 18.4.9.1 |
| chirality, 3.4.16.5, 15.5 | table, 3.4.10.4 |
| disulfide, 13.9, 23.5.17 | sorting, 18.4.9.1 |
| bond, 3.4.16.5, 15.5 | compounds, 20.6.4 |
| formal charge, 3.4.16.5, 15.5 | spec, 3.5.2 |
| tether, 3.4.16.5, 15.5 | specifications, 23.2.1 |
| types, 3.4.16.6, 15.6 | faq, 23.2.1 |
| setAPFparams, 23.7.18 | speed, 6.1.2 |
| setup, 18.6.5, 23.6.14 | sphere, 3.4.1.1.10, 23.5.11 |
| ligand receptor, 19.1 | spherical, 23.5.9, 23.5.12 |
| shade and box, 9.5.6 | selection, 22.1.8 |
| shading, 5.2.11 | split, 17.17.3 |
| shadow, 5.7.2 | spreadsheet, 17.6.2 |
| sheet, 23.3.19 | square, 23.5.7 |
| stack, 18.1.12, 18.6.9, 23.8.2 | area, 3.4.7.5, 10.5 |
| standard table, 20.1 | surfaces, 5.2.1 |
| standardize, 17.2 | surrounding, 4.4, 23.5.11 |
| table, 17.2 | swissprot, 3.3.1, 9.1 |
| start, 16.13.2 | symmetry, 3.4.5.1, 3.4.5.3, 12.1, 12.3, 22.3.4, 22.3.5 |
| dock, 18.1 | packing, 3.4.5.1 |
| startup, 23.9.2 | tab, 20.1.2, 20.1.19 |
| static, 23.5.8 | pdb, 3.5.4 |
| stereo, 3.4.1.15.6, 16.2.26, 23.2.2, 23.2.3, 23.10.6 | table, 16.2.21, 16.2.22, 16.2.26, 16.2.28, 16.2.29, 16.2.32, 16.2.33, 17.6.2, 17.9, 17.18.1, 20, 20.1.26, 20.1.31, 20.1.34, 20.4, 20.4.1, 20.4.4, 20.4.5, 20.4.7, 20.4.9, 20.4.10, 20.4.11, 20.4.12, 20.4.13, 20.4.14, 20.4.15, 20.7, 23.5.19, 23.7.9, 23.7.10, 23.7.12, 23.7.13 |
| hardware, 3.4.3.7 | alignment, 20.1.10 |
| side-by-side, 3.4.3.6 | clone, 20.1.14 |
| stereohard faq, 23.2.2 | color, 20.1.8 |
| stereoisomer, 17.6.5 | column format, 20.1.31 |
| stereoisomers, 17.11 | copy, 20.1.27, 20.1.28 |
| stick, 3.4.1.15.5 | delete, 20.1.15 |
| still, 8.2.3 | edit, 20.1.22 |
| stop, 6.1.3 | filter, 20.1.33 |
| store, 3.4.3.19, 6.1.4, 23.3.21 | find, 20.1.7 |
| current view, 3.4.3.19 | replace, 16.2.30 |
| faq, 23.3.21 | font, 20.1.9 |
| strain, 3.4.6.2, 14.2 | size, 23.3.1 |
| strip, 23.5.9 | grid, 20.1.5 |
| structure, 3.4.5.3, 12.3, 20.6, 22.3, 23.5 | histogram, 20.4.1 |
| ensemble, 3.4.16.9, 15.9 | insert, 20.1.23 |
| representation, 5.1.1 | layout, 20.1.5 |
| smiles, 17.6.4 | mark, 20.1.11 |
| display, 3.1.8 | row, 20.1.11 |
| undisplay, 3.1.8 | mouse, 20.1.35 |
| structures, 4.1.1, 16, 16.1 | navigation, 20.1.4 |
| style, 3.4.1.15.5 | new, 3.4.1.1.7 |
| substructure, 16.11, 16.13.3, 17.3, 23.7.5, 23.7.6 | column, 20.1.23 |
| alerts, 17.3 | plot, 20.4 |
| suface, 23.5.19 | print, 20.1.17 |
| sulfur, 13.9 | rename, 20.1.13 |
| superimpose, 3.4.8, 11.2, 23.3.5, 23.5.6, 23.5.7, 23.5.8 | rightclick, 20.1.12 |
| 3D, 3.4.8.2 | save, 20.1.3 |
| grid, 3.4.8.4 | selection, 20.1.3 |
| multiple proteins, 3.4.8.3 | search, 20.1.7 |
| 3D, 3.4.8.2, 11.3 | select, 20.1.21 |
| Calpha, 3.4.8.2, 11.3 | setup, 20.1.16 |
| arrange.grid, 3.4.8.4, 11.5 | sort, 20.1.32 |
| backbone, 3.4.8.2, 11.3 | split fragments, 16.2.31 |
| flexible, 17.18.3 | view, 20.1.5 |
| heavy atoms, 3.4.8.2, 11.3 | save, 20.1.6 |
| multiple, 3.4.8.3, 11.4 | zoom translate, 16.2.28 |
| rigid, 17.18.1, 17.18.2 | action, 20.1.35 |
| substructure, 17.18.1, 17.18.2, 17.18.3 | alignment, 20.1.10 |
| superposition, 17.18, 17.19.1, 17.19.2 | append, 20.1.33 |
| surface, 3.4.1.15.5, 3.5.1, 5.1.1, 5.1.7, 5.2, 23.3.15 | clone, 20.1.14 |
| area, 3.4.7.5, 10 | color, 20.1.8 |
| columns, 16.2.6 | template, 13.3, 17.18 |
| compare, 16.2.19 | docking, 23.6.4 |
| copy, 16.2.5 | terminal, 16.2.26 |
| cursor, 20.1.35 | font size, 23.3.1 |
| delete, 20.1.12, 20.1.15 | text, 3.4.1.15.7, 6.6, 6.6.1, 6.6.6, 16.2.26, 16.13.3, 23.7.16 |
| display, 23.9.4 | search, 16.9.4 |
| double.click, 20.1.35 | texture, 3.5.6 |
| edit, 16.2.15 | thoroughness, 17.9, 17.18, 23.6.13 |
| excel, 16.2.8, 20.1.18 | three, 16.2.21, 23.7.11 |
| export, 16.7 | threshold, 3.4.1.15.5 |
| filter, 16.2.10, 20.1.33 | tier, 3.1.17 |
| find-replace, 16.2.11 | time, 23.6.12 |
| to screen, 20.1.4 | racemic, 17.6 |
| font, 20.1.9 | tools 3D, 3.4.6 |
| foreground, 23.9.4 | analysis, 3.4.7 |
| grid lines, 20.1.4 | append rows, 3.4.10.7 |
| hide, 20.1.30 | extras, 3.4.9 |
| hyperlink, 16.2.13 | plot function, 3.4.9.1 |
| insert, 20.1.25 | identify ligand binding pocket, 3.4.6.5 |
| join, 3.4.10.5 | oda, 3.4.6.4 |
| label, 16.2.12 | superimpose, 3.4.8 |
| landscape, 20.1.16 | table, 3.4.10 |
| mark, 16.2.12 | Learn, 3.4.10.1 |
| merge, 3.4.10.5, 16.2.20, 17.15 | clustering, 3.4.10.3 |
| mouse, 20.1.35 | merge, 3.4.10.5 |
| name, 20.1.13 | predict, 3.4.10.2 |
| new, 20.1.1 | torsion, 5.9.6, 23.5.16 |
| options, 20.1.12 | angles, 5.9, 5.9.6 |
| orientation, 20.1.16 | transition.blend, 23.3.30 |
| portrait, 20.1.16 | transitions, 6, 23.3.29 |
| print, 16.2.9, 20.1.4, 20.1.17 | translate, 3.1.2, 5, 5.9, 16.2.28 |
| read, 20.1.2 | translation, 3.1.3, 5.9.3, 9.2.3, 20.4.13 |
| rename, 20.1.13 | transparent, 5.2.8 |
| right click, 20.1.12 | background, 5.12.3 |
| row, 20.1.25 | ribbon, 23.3.3 |
| rows, 3.4.10.7 | tree, 9.5.4, 20.7.1, 20.7.2, 20.7.3 |
| save, 16.2.7, 20.1.3, 20.1.4, 20.1.19 | branch swapping, 9.5.4 |
| scale, 20.1.16 | distance, 17.12.3 |
| scroll, 20.1.4 | edit, 17.12.4 |
| sdf, 16.2.7 | reorder, 17.12.3 |
| select, 20.1.21 | trouble shooting, 23.10.3 |
| setup, 20.1.16 | trouble-shooting, 23.10.4 |
| sort, 3.4.10.4, 16.2.3, 20.1.32 | troubleshooting, 23.10 |
| standard, 20.1 | truncating a mesh object, 23.3.14 |
| view, 16.2.4, 16.2.27 | crash qlock, 23.10.5 |
| width, 20.1.4 | tsv, 20.1.19 |
| tables, 17.14, 20 | tut analyze alternative orientations, 22.3.7 |
| tautomer, 17.10, 23.5.15 | occupancy, 22.3.6 |
| tautomers, 17.10 | symmetry, 22.3.5 |
| temperature, 3.4.6.3, 14.3 | hydrogen bond, 22.3.3 |
| tut2a, 22.3.1 | center, 3.4.3.20 |
| tut2b, 22.3.2 | color background, 3.4.3.18 |
| tut3, 22.4 | dock results, 18.1.12 |
| tut3a, 22.4.1 | fog, 3.4.3.5 |
| tut3e, 22.3.8 | macroshape, 3.4.3.22 |
| tut4b, 22.5.1 | menu, 3.4.3 |
| tut4c, 22.5.4 | mesh clip, 5.10.1 |
| tut4d, 22.5.5 | perspective, 3.4.3.9 |
| tut5, 22.7 | selection level, 3.4.3.3 |
| tut5a, 22.7.1 | mode, 3.4.3.4 |
| tut5b, 22.7.2 | shadow, 3.4.3.13 |
| tut5c, 22.8.1 | sketch accents, 3.4.3.14 |
| tut5e, 22.8.2 | slide show, 6.3.1 |
| tutorial 2D pharmacophore, 22.5.7 | tools, 3.4.3 |
| 3D pharmacophore, 22.5.6 | tree, 20.7.3 |
| chemical search, 22.5.3 | undisplay all, 3.4.3.1 |
| edit chemical, 22.5.2 | stach, 3.4.16.10, 15.10 |
| graphical selections, 22.1.5 | virtual, 18.4, 18.4.1, 18.4.2, 22.7, 22.8.1 |
| molecular documents, 22.1.11 | screening examples, 22.8 |
| sequence alignment, 22.2 | virus, 3.4.5.3, 12.3 |
| link, 22.2.2 | vls, 18.2, 18.2.3, 18.4, 18.4.5, 18.4.9.6, 22.8.2, 23.6.8, 23.6.9 |
| load sequence, 22.2.1 | analysis, 18.4.9.6 |
| sequence conservation, 22.2.3 | display, 18.4.9.5 |
| tutorials, 22 | getting started, 18.4.2 |
| tween, 8.2.4 | histogram, 18.4.9.3 |
| two, 16.2.21, 23.7.11 | scatter plot, 18.4.9.2 |
| unclip, 5.2.9, 5.10.1 | introduction, 18.4.1 |
| undisplay, 3.1.7, 5.1.8, 23.3.9, 23.3.31 | preferences, 18.4.4 |
| origin, 5.5.13 | results, 18.4.8 |
| undo, 3.4.1.15, 3.4.2.9, 16.3.12 | run, 18.4.5 |
| redo structure, 16.3.12 | scatterplot, 18.4.9.4 |
| uniprot, 3.3.1 | visualization, 18.4.10 |
| sites, 5.5.7 | results, 18.4.8 |
| uniptrot, 5.5.7 | volume, 16.3.5 |
| unique, 16.2.26, 17.16 | wavefront, 3.5.6, 5.2.10 |
| unit, 3.4.5.3, 12.3 | weak, 23.5.20 |
| units, 23.6.1 | web, 22.1.11 |
| unix, 23.9.2 | browser, 3.4.1.11 |
| updates, 1 | weight, 17.1, 23.7.12, 23.7.15 |
| use activeicm, 7.4 | weighted, 20.7 |
| user, 1, 16.13.4 | what to dock, 18.1.1.2 |
| user-defined groups, 16.3.3 | width, 20.1.20 |
| uundisplay-all, 3.4.3.1 | window, 3.1.17 |
| van der waal, 5.5.16 | windows, 3.1.18, 16.13.1 |
| variable, 3.4.1.15.7, 23.3.8 | wire, 3.4.1.15.5, 3.5.1, 5.1.1, 5.1.2, 23.3.4, 23.3.20 |
| verbose, 17.9 | wireBondSeparation, 3.4.1.15.1 |
| vicinity, 17.9 | working directory, 23.6.24 |
| video, 8 | workspace, 3.1.7, 4.3.1, 16.5.2, 22.1.7 |
| view, 3.4.3.19, 6.3.1, 16.2.26, 23.3.21, 23.8.2 | panel, 3.1.7 |
| animate view, 3.4.3.15 | selection, 3.2.7 |
| write, 3.1.19, 5.12.1, 20.4.16, 23.7.4, 23.8.1 | |
| image, 3.4.1.14 | |
| image, 3.4.1.14 | |
| object, 3.1.13 | |
| picture, 3.4.1.14 | |
| project, 3.1.14, 3.4.1.7 | |
| table, 20.1.3 | |
| writing a pdb file, 23.5.3 | |
| ray, 3.4.5 | |
| xi, 5.5.5, 23.3.17 | |
| xstick, 5.1.3, 23.3.20 | |
| xyz, 23.3.9 | |
| zoom, 3.1.2, 3.1.3, 5, 5.9, 5.9.4, 16.2.28, 20.4.13 | |
|