Mar 8 2010
Contents
 
Introduction
How To?
Menu Options
Graphics Tools
Tabs
Selections
Tables
Local DB
Sequences
 Load
 Alignments
Homology and Modelling
Working with Chemistry Tools
Chemsitry Menu
Docking
Ligand Editor
Animations, Slides, & Documents
ActiveICM
Movie Making
Frequently Asked Questions
Tutorials
 
Index
PrevICM User's Guide
9.1 Load Sequence
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There are a number of different ways to load a sequence into ICM via the Graphical User Interface.

Read a Sequence from SwissProt

Swissprot is a curated protein sequence database which provides a high level of annotation (such as the description of the function of a protein, its domains structure, post-translational modifications, variants, etc.). Each protein entry has an unique SwissID code associated. To retrieve a Swissprot annotated protein sequence enter the SwissID code and click 'OK'. The annotation can be transferred to a protein structure, providing that the structure has the same sequence (or has been aligned to the retrieved Swissprot sequence)

  • File/Load/SWISSPROT
  • Enter SWISSPROT ID

Paste your own sequence into ICM

  • File/New/Sequence
  • Paste the Sequence into the box provided.

Extract a Sequence from a PDB file

  • Right click on a loaded PDB file in the ICM Workspace.
  • Select Extract Sequence(s)

Read from file

If you have a sequence file saved in FASTA format it can be read into ICM by:

  • File/Open


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