Jul 23 2008
Contents
 
Introduction
Overview - RECOMMENDED READING FOR NEW ICM USERS
File Menu
Graphics Move Tools
Display Tab
Light Tab
Labels Tab
PDB Search Tab
Meshes Tab
View Menu
Selections
Tables
Local DB
Sequences
 Load
 Alignments
Bioinfo Menu
Tools Menu - Xray
Tools Menu - 3D Predict
Tools Menu - Analysis
Tools Menu - Superimpose
Homology and Modelling
Working with Chemistry Tools
Chemsitry Menu
Docking
Ligand Editor
Animations, Slides, & Documents
ActiveICM
Movie Making
Frequently Asked Questions
Tutorial - Graphical Display
Molecular Document
Tutorial - Working with PDB Protein Structures
Tutorial - Working with Sequence Alignments
Tutorial - Ligand Binding Pocket Analysis
Tutorial - Homology and Modeling Tools
Tutorial - Crystallographic Analysis Tools
Tutorial - Working with Chemical Tables
Tutorial - Working with the Molecular Editor
Tutorial - Chemical Searching
Tutorial - Docking and Virtual Ligand Screening
 
Index
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14.1 Load Sequence
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There are a number of different ways to load a sequence into ICM via the Graphical User Interface.

Read a Sequence from SwissProt

Swissprot is a curated protein sequence database which provides a high level of annotation (such as the description of the function of a protein, its domains structure, post-translational modifications, variants, etc.). Each protein entry has an unique SwissID code associated. To retrieve a Swissprot annotated protein sequence enter the SwissID code and click 'OK'. The annotation can be transferred to a protein structure, providing that the structure has the same sequence (or has been aligned to the retrieved Swissprot sequence)

  • File/Load/SWISSPROT
  • Enter SWISSPROT ID

Paste your own sequence into ICM

  • File/New/Sequence
  • Paste the Sequence into the box provided.

Extract a Sequence from a PDB file

  • Right click on a loaded PDB file in the ICM Workspace.
  • Select Extract Sequence(s)

Read from file

If you have a sequence file saved in FASTA format it can be read into ICM by:

  • File/Open


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