Dec 10 2014 Feedback.
Contents
 
Introduction
Reference Guide
 ICM-Browser Guide
  Download
  Graphical Display
  Selections
  Convert, Hydrogens and Pockets
  Effects
  Labels and Annotations
  Images
  Superimpose
  Distances and Angles
 ICM-Browser-Pro Guide
 ActiveICM Guide
 ICM-Chemist Guide
 ICM-Chemist-Pro Guide
 Menu Option Guide
 Tab Guide
Getting Started
Protein Structure
Molecular Graphics
Slides & ActiveICM
Sequences & Alignments
Protein Modeling
Cheminformatics
Docking
Virtual Screening
3D Ligand Editor
Tables
Local Databases
KNIME
Tutorials
FAQs
 
Index
PrevICM User's Guide
2.1 ICM-Browser Reference Guide
Next

[ Download | Graphical Display | Selections | Convert, Hydrogens and Pockets | Effects | Labels and Annotations | Images | Superimpose | Distances and Angles ]

For instructions on how to use ICM-Browser to make fully-interactive 3D slides and publish them in PowerPoint and the web please see the ActiveICM User Guide. ActiveICM is a free plugin for Windows PowerPoint and web browsers. Other related tutorials include:

2.1.1 Download and Install ICM-Browser


Getting Started: Download and Install ICM-Browser and ActiveICM.
Download ICM-Browser Distribution.Downloadvideo
Install ICM-Browser Instructions.Windows Linux Mac
Download ActiveICM Distribution.Downloadvideo
Install ActiveICM. Windows Linux Mac

2.1.2 How to use the Graphical Display


How to use the Graphical Display
How to search the PDB. HTML GUI Manualvideo
How to Move a Structure in the Graphical Display. HTML GUI Manualvideo
How to use the Graphics window controls. HTML GUI Manual
How to use the ICM Workspace Panel HTML GUI Manualvideo
How to Display a Molecule. HTML GUI Manualvideo
How to Change Protein Representation. HTML GUI Manualvideo
How to Change Ribbon Representation. HTML GUI Manualvideo
How to color wire or xstick carbon atoms. HTML GUI Manualvideo
How to Display the Residues Surrounding the Ligand Binding Pocket. HTML GUI Manualvideo
How to remove chain breaks (dotted lines). HTML GUI Manualvideo
How to Color. HTML GUI Manualvideo
How to Change the Color of Molecule Representations. HTML GUI Manualvideo
How to Change the Background Color. HTML GUI Manualvideo
How to Display a Binding Pocket Surface HTML GUI Manualvideo
How to (Un)Display Hydrogens. HTML GUI Manualvideo
How to Save an ICM Object. HTML GUI Manualvideo
How to Save an ICM Project File. HTML GUI Manualvideo
How to Drag and Drop. HTML GUI Manual
How to: Right Click Options. HTML GUI Manual
How to Move Windows. HTML GUI Manualvideo
How to Arrange Windows HTML GUI Manualvideo

2.1.3 How to make Graphical Selections


How to Make Selections. HTML GUI Manual
How to Select an Object HTML GUI Manualvideo
How to Select a Molecule HTML GUI Manualvideo
How to Select Residues HTML GUI Manualvideo
How to Select Atoms HTML GUI Manualvideo
How to Make a Spherical Selection. HTML GUI Manualvideo
How to Invert a Selection. HTML GUI Manualvideo
How to Remove a Selection. HTML GUI Manualvideo
How to Change the Selection Level and Mode. HTML GUI Manualvideo
How to Check What is Selected. HTML GUI Manual

2.1.4 How to Convert Proteins, Display Hydrogens and Ligand Binding Pocket.


Convert Protein, Display Hydrogens and Ligand Binding Pocket.
How to Convert a PDB Structure into an ICM Object. HTML GUI Manualvideo
How to Display Ligand Binding Pocket. HTML GUI Manualvideo
How to Display Hydrogen Bonds. HTML GUI Manualvideo

2.1.5 How to change Graphics Effects


How to change Graphics Effects
How to display the FOG effect. HTML GUI Manualvideo
How to display side-by-side stereo. HTML GUI Manual
How to display Anaglyph stereo. HTML GUI Manual
How to toggle full screen mode. HTML GUI Manualvideo
How to adjust perspective. HTML GUI Manual
How to change the lighting. HTML GUI Manualvideo
How to display sketch accents. HTML GUI Manualvideo
How to display elegant ribbon and ligand sketch. HTML GUI Manualvideo

2.1.6 How to add Labels and Annotations


How to add Labels and Annotations
How to Label Residues. HTML GUI Manualvideo
How to Label Atoms. HTML GUI Manualvideo
How to Label Variables. HTML GUI Manualvideo
How to Display and Undisplay Sites. HTML GUI Manual
How to Make and Display Sites (Annotations). HTML GUI Manual
How to Make and Display 2D and 3D Labels. HTML GUI Manualvideo

2.1.7 How to Make High Quality Publication Images


How to Make High Quality Publication Images
How to Toggle High Quality Display HTML GUI Manualvideo
How to Toggle Antialiasing. HTML GUI Manualvideo
How to Copy Image to ClipBoard HTML GUI Manualvideo
How to Write an Image. HTML GUI Manualvideo
How to Use the Advanced Write Image Options. HTML GUI Manualvideo
How to Add an Image to the ICM Photo Album. HTML GUI Manualvideo

2.1.8 How to Superimpose Protein Structures.


How to Superimpose Protein Structures.
How to Superimpose Two or More Protein Structures. HTML GUI Manualvideo

2.1.9 How to Measure Distances and Angles.


How to Measure Distances and Angles.
How to Measure Distances Between Two Atoms. HTML GUI Manualvideo
How to Measure Distances From One Atom to Many. HTML GUI Manualvideo
How to Show Corresponding Distances in Two Objects. HTML GUI Manualvideo
How to Display the Ruler Bar. HTML GUI Manualvideo


Prev
Reference Guide
Home
Up
Next
ICM-Browser-Pro Guide

Copyright© 1989-2014, Molsoft,LLC - All Rights Reserved.
This document contains proprietary and confidential information of Molsoft, LLC.
The content of this document may not be disclosed to third parties, copied or duplicated in any form,
in whole or in part, without the prior written permission from Molsoft, LLC.