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In this chapter we describe the tools available for analyzing protein structure. These tools include calculating RMSD, identifying closed cavities, calculating contact and surface area, measuring anlgles and distances, and generating Ramachandran plots.
Chapter Contents:
- Find Related Chains
- Calculate RMSD
- Contact Areas
- Identify Closed Cavities
- Surface Area
- Measure Distances
- Planar Angle
- Dihedral Angle
- Ramachandran Plot Interactive
- Export Ramachandran Plot
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