Index
&, 2.14.3
Box, 2.35.21
2D chemicals, 2.23.9.16
Bracket, 2.35.22
labels, 2.34.58.1
C, 5.3
to 3D, 3.17
CCP4, 5.6.6
trees, 2.34.65.38
CGI, 2.11
smooth, 2.35.146.2
COLOR.bg, 2.19.9
3D chemical builder, 1.4.2.8
distanceAtom, 2.19.10
font size, 2.34.23.12
label, 2.19.11
label, 2.34.23.12, 2.34.89.39
CONSENSUS, 2.23.1
labels, 2.34.58.1
CONSENSUSCOLOR, 2.23.2
mol file, 2.37.86
CONSENSUS_strength, 2.19.12
plots intro, 1.4.3.7
smoothing, 2.35.146.3
Cad1, 2.35.23.1
superposition, 2.37.22
Cadalign, 2.35.23.2
transformations, 2.34.102.2
Ceil, 2.35.24
tree, 2.34.65.38
Cell, 2.35.25
chemical similarity, 2.35.136
Charge, 2.35.26
pharmacophore comparison, 2.35.136.4
Chemical, 2.35.27
3dxml, 5.5.3
Functions, 2.28
=, 2.14.1
Synthetic Accessibility, 2.31
A, 5.1
Cluster, 2.35.28
ANN, 2.34.53
Collada, 5.5.3
APF distance, 2.35.136
Collection, 2.35.28.1
Abs, 2.35.1
Color, 2.35.29
Acc, 2.35.2
from gradient, 2.35.29.1
Acos, 2.35.3
image, 2.35.29.2
Acosh, 2.35.4
protein, 2.35.29.3
Adobe, 2.21.23
CombiRIDGE, 3.13.1.24
Align, 2.35.5
Compare, 2.35.30
sequence, 2.35.5.1
Connolly surface, 5.8.7
AlignSS, 2.36.1
Consensus, 2.35.31
Angle, 2.35.6
Contour, 2.35.32
Apple, 3.14.6.2
Corr, 2.35.33
Area, 2.35.7
Cos, 2.35.34
residue contacts, 2.35.7.1
Cosh, 2.35.35
Asin, 2.35.8
Count, 2.35.36
Asinh, 2.35.9
CubicRoot, 2.35.37
Ask, 2.35.10
D, 5.4
Askg, 2.35.11
DAE, 5.5.3
Atan, 2.35.12
DE, 2.34.35.2
Atan2, 2.35.13
DNA Representation, 1.4.1.3
Atanh, 2.35.14
alignment, 2.34.3.4
Atom, 2.35.15
melting temperature, 2.35.164
Augment, 2.35.16
to RNA conversion, 2.35.138.1
Axis, 2.35.17
views, 1.4.1.3
B, 5.2
Date, 2.35.38
BPMC, 5.2.6
Deletion, 2.35.39
Bfactor, 2.35.19
Blob, 2.35.18
numeric, 2.35.40
Boltzmann, 2.35.20
Det, 2.35.42
pattern, 2.35.56.3
2 alignments, 2.35.44.13
in array, 2.35.56.1
matrices, 2.35.44.9
table, 2.35.56.2
Dayhoff, 2.35.44.11
FlexLM license info, 2.35.188
Tanimoto, 2.35.44.7
Floor, 2.35.57
alignment, 2.35.44.12
Formula, 2.35.58
as_, 2.35.44.3
GCNN, 3.13.1.26
rarray, 2.35.44.4
GINGER, 3.13.1.22
atoms, 2.35.44.3
GPU, 3.13.1.22
chemical, 2.35.44.7, 2.35.44.15
GRAPHICS, 2.23.5
chemset, 2.35.44.8
alignmentRainbow, 2.23.5.1
dayhoff, 2.35.44.11
atomLabelShift, 2.23.5.2
hierarchical, 2.35.44.6
atomValueCircles, 2.23.5.3
iarray, 2.35.44.1
alignment, 2.35.44.12
ballStickRatio, 2.23.5.5
chainBreakLabelDisplay, 2.23.5.8
multiple atomic, 2.35.44.4
chainBreakStyle, 2.23.5.7
rarray, 2.35.44.2
clashWidth, 2.23.5.6
tether, 2.35.44.10
clipStatic, 2.23.5.10
tree, 2.35.44.14
clippingPlane, 2.23.5.9
cluster, 2.35.44.14
cpkClipCaps, 2.23.5.11
H, 5.5
displayLineLabels, 2.23.5.12
Ligase protacModel.icm, 3.16
displayMapBox, 2.23.5.13
number, 2.35.44.6
dnaBallRadius, 2.23.5.14
EDS server, 2.37.42
dnaRibbonRatio, 2.23.5.15
EST-alignment, 2.34.3.4
dnaRibbonStyle, 2.23.5.16
Eigen, 2.35.45
dnaRibbonWidth, 2.23.5.17
Enamine, 3.13.1.25
dnaRibbonWorm, 2.23.5.18
Energy, 2.35.46
dnaStickRadius, 2.23.5.19
Entropy, 2.35.47
formalChargeDisplay, 2.23.5.20
Error, 2.35.48
grobDotSize, 2.23.5.21
soap, 2.35.49
grobLineWidth, 2.23.5.22
Exist, 2.35.50
hbondAngleSharpness, 2.23.5.26
molcart, 2.35.50.1
hbondBallPeriod, 2.23.5.27
Existenv, 2.35.51
hbondBallStyle, 2.23.5.28
Exp, 2.35.53
hbondMinStrength, 2.23.5.25
Extension, 2.35.52
hbondRebuild, 2.23.5.24
FILTER, 2.23.3
hbondStyle, 2.23.5.23
Z, 2.23.3.1
hbondWidth, 2.23.5.29
gz, 2.23.3.2
hetatmZoom, 2.23.5.31
uue, 2.23.3.3
hydrogenDisplay, 2.23.5.32
FTP, 2.23.4
light, 2.23.5.33
createFile, 2.23.4.1
lightPosition, 2.23.5.34
keepFile, 2.23.4.2
mapLineWidth, 2.23.5.35
proxy, 2.23.4.3
occupancyDisplay, 2.23.5.36
occupancyRadiusRatio, 2.23.5.37
user, 2.35.54.1
File, 2.35.55
rainbowBarStyle, 2.23.5.39
Find, 2.35.56
resLabelDrag, 2.23.5.40
chemical, 2.35.56.3
resLabelYShift, 2.23.5.41
ribbonGapDistance, 2.23.5.43
Hartree-Fock, 2.34.84.21, 2.34.110.17
ribbonRatio, 2.23.5.44
Header, 2.35.64
ribbonWidth, 2.23.5.45
Histogram, 2.35.65
ribbonWorm, 2.23.5.46
N, 5.6
rocking, 2.23.5.47
ICM desktop, 2.23.8.6
rockingRange, 2.23.5.48
documents, 2.34.84.4
rockingSpeed, 2.23.5.49
modules, 1.4.4
selectionLevel, 2.23.5.50
object, 2.37.13
selectionStyle, 2.23.5.51
residue library, 2.21.24
sketchAccents, 2.23.5.30
stereoMode, 2.23.5.52
intro, 1.7.1
script, 2.34.8
surfaceDotDensity, 2.23.5.55
ICMFF force field, 2.37.79
surfaceDotSize, 2.23.5.54
ICMHOME, 3.1.2.1
surfaceProbeRadius, 2.23.5.56
shell variable, 3.1.2.1
transparency, 2.23.5.57
IMAGE, 2.23.9
wormRadius, 2.23.5.58
bondLength2D, 2.23.9.15
GRID, 2.23.6
color, 2.23.9.8
gcghExteriorPenalty, 2.23.6.1
compress, 2.23.9.9
gpGaussianRadius, 2.23.6.6
font, 2.23.9.16
margin, 2.23.6.2
gammaCorrection, 2.23.9.7
maxEl, 2.23.6.3
generateAlpha, 2.23.9.10
maxVw, 2.23.6.5
lineWidth, 2.23.9.3
minEl, 2.23.6.4
lineWidth2D, 2.23.9.14
GROB, 2.23.7
orientation, 2.23.9.17
arrowRadius, 2.23.7.3
paperSize, 2.23.9.18
atomSphereRadius, 2.23.7.1
previewResolution, 2.23.9.13
contourSigmaIncrement, 2.23.7.5
previewer, 2.23.9.12
relArrowHead, 2.23.7.4
printerDPI, 2.23.9.2
relArrowSize, 2.23.7.2
quality, 2.23.9.1
GUI, 2.23.8
rgb2bw, 2.23.9.19
defaults, 3.14.6.2
scale, 2.23.9.4
dialog, 2.33
stereoAngle, 2.23.9.6
plot, 2.34.65.32
stereoBase, 2.23.9.5
preferences, 2.34.85.4
stereoText, 2.23.9.11
tableRowMarkColors, 2.23.8.5
writeScale, 2.23.9.20
windowLayout, 2.23.8.6
I_out, 2.24.4
workspaceFolderStyle, 2.23.8.9
workspaceStyle, 2.23.8.7
atom numbers, 2.35.66.4
workspaceTabStyle, 2.23.8.8
bits to integers, 2.35.66.3
GaussFit, 2.35.82
inverse, 2.35.66.2
Getarg, 2.35.59
residue numbers, 2.35.66.5
Getenv, 2.35.60
reverse, 2.35.66.2
GigaScreen, 3.13.1.26
stack, 2.35.66.6
Gradient, 2.35.61
Icm Options, 2.1
Graphics, 1.4.1
IcmSequence, 2.35.67
Grob, 2.35.62
Image, 2.35.68
Group, 2.35.63
collection, 3.9.2.1
HTTP.ignoreProxyDomains, 2.23.4.5
frame by frame, 3.9.2.2
proxy, 2.23.4.4
InChI, 2.35.69
InList, 2.35.105
residue areas, 2.35.90.8
Index, 2.35.70
comparison, 2.35.90.5
chemical, 2.35.70.2
stack, 2.35.90.11
compare, 2.35.70.10
sub, 2.35.90.2
element in array, 2.35.70.8
symmetric, 2.35.90.3
fork, 2.35.70.1
table, 2.35.90.6
regexp, 2.35.70.4
tensor, 2.35.90.7
string, 2.35.70.3
Max, 2.35.91
table label, 2.35.70.6
image graphic, 2.35.91.1
selection, 2.35.70.5
MaxHKL, 2.35.92
tree, 2.35.70.9
Mean, 2.35.94
unique elements, 2.35.70.7
Median, 2.35.93
Indexx, 2.35.71
Method, 2.22.13
Info, 2.35.73
Min, 2.35.95
image, 2.35.74
Mod, 2.35.97
model, 2.35.75
Mol, 2.35.98
Insertion, 2.35.72
MolLogP, 2.29
Integer, 2.35.76
MolLogS, 2.30
Integral, 2.35.77
MolPSA, 5.7.12
Interrupt, 2.35.78
MolSynth, 2.31
Introduction, 1
Moment, 2.35.88
JSON, 2.34.84.57
of Inertia, 2.35.88
LIBRARY, 2.23.10
Money, 2.35.96
men, 2.23.10.1
N-terminus, 2.23.14.4
res, 2.23.10.2
NMR, 2.34.63.1
Label, 2.35.79
NOE averaging, 2.22.6
Laplacian, 2.35.80
Name, 2.35.99
Latent, 2.35.187.3
chemical, 2.35.99.6
LatentVector, 2.35.187.3
property, 2.35.99.1
Length, 2.35.81
close sequence, 2.35.99.3
LinearFit, 2.35.83
conf, 2.35.99.7
LinearModel, 2.35.84
image, 2.35.99.11
Log, 2.35.85
molcart, 2.35.99.12
object parray, 2.35.99.10
sequence, 2.35.99.8
MD, 3.19
soap, 2.35.99.2
M_out, 2.24.5
string, 2.35.99.4
Mac, 3.14.6.2
tree, 2.35.99.5
Map, 2.35.86
Namex, 2.35.100
Markush structures, 2.34.55
image, 2.35.100.2
Mass, 2.35.87
sequence, 2.35.100.1
Match, 2.35.89
Newick tree format, 2.35.156.4
Mathews, 2.35.136.5
Next, 2.35.101, 2.35.101.1
Matrix, 2.35.90
covalent neighbors, 2.35.101.1
alignment, 2.35.90.9
Nof, 2.35.102
boundary, 2.35.90.10
chemical, 2.35.102.2
color, 2.35.90.4
distance, 2.35.102.3
grob connectivity, 2.35.90.13
latent, 2.35.102.6
histogram, 2.35.90.12
library, 2.35.102.4
new, 2.35.90.1
molcart, 2.35.102.5
tree, 2.35.102.1
file, 2.34.55
Norm, 2.35.103
RIDE, 3.18
Normalize, 2.35.104
NotInList, 2.35.105
RNA topology, 2.23.5.16
R, 5.7
RTCNN, 3.13.1.26
OBJECT, 2.23.11
R_2out, 2.24.7
Obj, 2.35.106
R_out, 2.24.6
Occupancy, 2.35.107
Radius, 2.35.120
Random, 2.35.121
PCA, 3.3.9
string, 2.35.121.1
PLOT, 2.23.12
Rarray, 2.35.122
Yratio, 2.23.12.9
reverse, 2.35.122.2
box, 2.23.12.1
sequence projection, 2.35.122.1
color, 2.23.12.2
alignment projection, 2.35.122.3
font, 2.23.12.3
strength, 2.35.122.5
fontSize, 2.23.12.4
property assignment, 2.35.122.4
gridLineWidth, 2.23.12.5
RarrayAlignment, 2.35.122.5
labelFont, 2.23.12.13
Rarrayinverse, 2.35.122.2
lineWidth, 2.23.12.6
Real, 2.35.123
logo, 2.23.12.10
Reference, 2.35.125
markSize, 2.23.12.7
Guide, 2
numberOffset, 2.23.12.8
Remainder, 2.35.124
orientation, 2.23.12.11
Replace, 2.35.126
rainbowStyle, 2.23.12.14
chemical, 2.35.126.4
seriesLabels, 2.23.12.12
exact, 2.35.126.1
PLS, 2.35.102.6
regexp, 2.35.126.3
error, 2.35.136.5
simple, 2.35.126.2
models, 2.35.136.5
PROTAC, 3.16
Resali, 2.35.128
Parray, 2.35.109
Resolution, 2.35.129
Parray-object, 2.35.109
Rfactor, 2.35.131
Path, 2.35.108
Rfree, 2.35.132
Pattern, 2.35.110
Ride, 3.18
Pi, 2.35.111
Ring, 2.35.130
Polar Surface Area, 5.7.12
Rmsd, 2.35.133
Potential, 2.35.112
of subset, 2.23.14
Power, 2.35.113
Rot, 2.35.134
Predict, 2.35.114
S, 5.8
Probability, 2.35.115
Profile, 2.35.116
SC, 2.34.35.2
Property, 2.35.117
SEQUENCE.restoreOrigNames, 2.23.12.15
Protac, 3.16
SGE, 3.13.1.20
Protonation state, 2.35.160.11
SITE, 2.23.13
Putarg, 2.35.118
defSelect, 2.23.13.2
Putenv, 2.35.119
labelOffset, 2.23.13.3
QSAR, 2.34.53
labelStyle, 2.23.13.4
R-groups, 2.34.55
labelWrap, 2.23.13.5
REAL, 3.13.1.25
showSeqSkip, 2.23.13.6
REBEL, 3.7.2
wrapComment, 2.23.13.7
faq, 3.7.2
SLN notation, 2.35.156.10
matrix, 2.35.146.2
SMILES, 2.27
Smoothrs, 2.35.146.3
SoapMessage, 2.35.152
request message, 2.35.152
SolveQuadratic, 2.35.147
SSSR, 2.35.130
SolveQubic, 2.35.148
S_out, 2.24.8
Sort, 2.35.153
S_proteinTags, 2.24.9
Sarray, 2.35.135
Split, 2.35.154
index, 2.35.135.1
chemical, 2.35.154.4
Score, 2.35.136
multisep, 2.35.154.3
alignment, 2.35.136.9
regexp, 2.35.154.2
apf, 2.35.136.4
tree, 2.35.154.1
chemset, 2.35.136.2
Sql, 2.35.149
conservation, 2.35.136.8
Sqrt, 2.35.150
model, 2.35.136.5
Srmsd, 2.35.155
overlap, 2.35.136.1
Sstructure, 2.35.157
predictions, 2.35.136.6
String, 2.35.156, 2.35.156.8
sequence, 2.35.136.7
alternative, 2.35.156.7
torsion, 2.35.136.3
date, 2.35.156.2
Scripting Tutorials, 1.8
mol, 2.35.156.3
Select, 2.35.137
selection, 2.35.156.8
break, 2.35.137.1
slide gui, 2.35.156.9
alignment, 2.35.137.14
substring, 2.35.156.1
atom property, 2.35.137.7
chemical formula, 2.35.156.10
nmembers, 2.35.137.4
Sum, 2.35.158
string, 2.35.137.9
chemical, 2.35.158.1
expand, 2.35.137.6
image, 2.35.158.2
fix, 2.35.137.2
Swissprot, 2.34.110.24
graphical, 2.35.137.5
Symgroup, 2.35.159
neighbors, 2.35.137.3
T, 5.9
Select_by atom numbers, 2.35.137.10
TOOLS, 2.23.14
Select_by_sequence, 2.35.137.13
edsDir, 2.23.14.1
Select_by_text, 2.35.137.9
membrane, 2.23.14.2
Select_lists, 2.35.137.12
minSphereCubeSize, 2.23.14.3
Select_patching, 2.35.137.11
pdbChargeNterm, 2.23.14.4
Select_projection, 2.35.137.8
pdbReadNmrModels, 2.23.14.5
Sequence, 2.35.138
array, 2.35.138.3
smilesXyzSeparator, 2.23.14.7
Sequence(dna_or_rna nucleotide), 2.35.138.1
superimposeMaxDeviation, 2.23.14.10
reverse), 2.35.138.2
superimposeMaxIterations, 2.23.14.8
Shannon, 2.35.47
superimposeMinAtomFraction, 2.23.14.9
Shuffle, 2.35.139
tsShape, 2.23.14.12
Sign, 2.35.140
tsWeight, 2.23.14.13
Simulations, 1.4.2
writePdbRenameRes, 2.23.14.14
Sin, 2.35.141
Table, 2.35.160
Sinh, 2.35.142
alignment numbers, 2.35.160.3
Site, 2.35.143
distance, 2.35.160.10
Slide, 2.35.144
matrix, 2.35.160.4
Smiles, 2.35.145
model, 2.35.160.8
chem, 2.35.160.9
plot, 2.35.160.7
WEBLINK, 2.23.15
stack, 2.35.160.6
Warning, 2.35.191
url_decoder, 2.35.160.1
Wavefront format, 2.34.84.22
Table(alignment), 2.35.160.2
XML, 2.12
Table(stack), 2.35.160.6
Xyz, 2.35.192
Tan, 2.35.161
axes, 2.35.192.8
Tanh, 2.35.162
chemical match, 2.35.192.6
Tanimoto, 2.35.66.3
fract, 2.35.192.4
distance, 2.34.65.37
mesh, 2.35.192.3
matrix, 2.35.44.7
points, 2.35.192.1
Temperature, 2.35.164
rings, 2.35.192.2
Tensor, 2.35.163
transformed xyz, 2.35.192.5
Time, 2.35.165
vector2matrix, 2.35.192.7
Tointeger, 2.35.166
Z-shift, 2.19.35
Tolower, 2.35.167
ZEGA, 5.10.9
Toreal, 2.35.168
intro, 1.4.3.6
Torsion, 2.35.169
_NAME, 2.34.89.47
Tostring, 2.35.170
_chemBatch, 3.1.2.5
Toupper, 2.35.171
_chemSuper, 3.15
ToxScore, 2.36.2
_confGen, 3.17
Tr123, 2.35.172
_dockBatch, 3.13.1.7
Tr321, 2.35.173
_dockScan, 3.13.1.18
Trace, 2.35.174
_macro, 2.38.1
Trans, 2.35.175
file, 2.38.1
Transform, 2.35.176
_startup, 3.1.2.3
Transpose, 2.35.177
file, 2.38.2
Trim, 2.35.178
icm, 2.38.2
chemical, 2.35.179
a_, 2.8.1
sequence, 2.35.180
abbr, 1.6
Turn, 2.35.181
abbreviations, 1.6
Type, 2.35.182
absolute to cell x y z, 2.35.192.4
molcart, 2.35.182.2
accFunction, 2.24.2
soap, 2.35.182.1
acceptor, 3.6.1
Z, 5.10
access large sdf file, 2.34.84.24
Unique, 2.35.183
accessMethod, 2.22.2
Unix, 2.35.184
accessible residues, 3.3.6
Uppsala, 2.37.42
surface, 2.34.65.14, 5.8.15
server, 2.37.43
accessing sections, 2.34.110.24
SYNTHES, 3.13.1.25
accuracy, 2.35.136.5
V_, 2.8.1
acidity constant, 2.34.89.11, 2.34.89.12
Value, 2.35.185
activate fog, 2.34.23.24
soap, 2.35.186
alignment, 2.34.89.40
document, 2.34.89.40
symmetry transformation, 2.35.187.2
tab, 2.34.89.40
Vectorproduct, 2.35.187.1
table, 5.9.2.4
Vectorsymmetrytransformation, 2.35.187.2
add, 2.34.1
Version, 2.35.188
column, 2.34.1.1
View, 2.35.190
function, 2.34.1.1.1
Volume, 2.35.189
matrix, 2.34.1.2
WEBAUTOLINK, 2.23.16
slide, 2.34.1.3
row, 2.34.1.4
strength, 2.35.122.5
addBfactor, 2.19.1
adding atoms to non-ICM objects, 2.34.7.1
to sequence transfer, 2.35.122.1
columns to table, 2.34.1.1
text conversion, 2.35.156.4
hydrogens, 2.37.13
weighted, 2.35.5
in place, 2.14.4
gapExtension, 2.19.18
to slideshow, 2.34.1.3
gapOpen, 2.19.19
admet selection, 3.13.1.13
alignment_as_text, 2.35.156.4
advanced chemical search, 3.6
aliphatic amines, 2.34.70.2
operations, 2.14.6
all, 5.1.2
ops, 2.14.6
torsions table, 3.3.11
ahfs, 2.35.44.6
ai, 3.13.1.21
channel, 2.23.9.10
ali_seq_project, 2.35.156.5
alternative flag, 2.34.89.18
alias, 2.34.2
amber, 5.1.4
align, 2.34.3
3D, 2.34.3.5
colors, 2.35.29.3
faq, 3.3.2
labels, 2.34.3.2
heavy, 2.34.3.6
anchor, 3.13.1.24
how to, 3.3.2
and, 2.14.3
chemical, 2.34.88.1
angle rotation, 2.37.84
fragments, 2.34.3.4
angles, 2.35.102.3
intro, 1.4.3.3
angular hbond dependence, 2.23.5.26
number, 2.34.3.2
animated story, 5.8.14
chemical, 2.34.3.1
res numbers, 2.34.3.2
sequence, 2.34.3.3
sequences, 2.34.3.3
append, 5.1.5
alignMethod, 2.22.3
a tables, 2.34.1.4
alignMinCoverage, 2.19.2
column, 2.34.4.3
alignMinMethod, 2.19.2
command, 2.34.4
alignOldStatWeight, 2.19.3
sequence, 2.34.4.1
alignTwoSequences, 2.37.1
to group, 2.34.4.1
aligned residues, 2.35.128
stack, 2.34.4.2
tables, 2.34.50
as table, 2.35.160.2
by shared column, 2.34.4.3
block length, 2.18.22
appending, 2.34.1.1
secondary structure, 2.36.1
an element, 2.14.4
cleaning, 2.35.146.4
menu items, 2.23.10.1
color by property, 2.34.89.34
representations to a slide, 2.34.23.21
coloring, 2.21.1
rows to matrix, 2.34.1.2
conservation, 2.37.8
area under curve, 2.37.21
distance, 2.35.137.13
arguments, 2.34.64
editor, 2.4
arithmetic operations, 2.14.2
extraction, 2.35.5
arithmetics, 2.14
gap format, 5.1.1.1
aromatic planes, 2.37.4
intro, 1.4.3.4
assignment, 2.14.1
score, 2.35.136.8
derivative, 2.35.146.1
sequence reordering, 2.35.5
overlap, 2.35.136.1
size, 2.35.102
base, 5.2.1
subset, 2.6
pair diagram, 2.23.5.16
arrow from selection, 2.37.36
basis set, 2.34.84.21, 2.34.110.17
length, 2.34.89.26
batch chemical processing, 3.1.2.5
as2_out, 2.24.14
docking, 3.13.1.18
as_, 2.8.8
beta, 5.2.3
bfactor circles, 2.23.5.3
as_out, 2.24.13
biased probability monte carlo, 2.34.71
assign, 2.34.5
binary file table of contents, 2.34.84.2
residue, 2.34.6.1
files, 2.34.110.2
ring conformation to template, 2.34.66.4
string, 5.2.4
sstructure, 2.34.5.1
key, 2.34.89.43
binding energy, 3.7.4
assignment, 2.14.1
pocket finding, 3.4.2
atc code, 2.35.44.6
pockets, 2.34.92.1
side comparison, 2.37.8
centers within, 2.35.151
site analysis, 3.4.2
code file, 2.38.4
biological symmetry, 2.34.89.9
coordinates, 2.35.192.1
vector, 2.35.66.3
flickering, 2.34.89.3
to integers compression, 2.35.66.3
label font, 2.38.15
blast, 2.34.110.25
labels, 2.34.89.2
files, 2.34.110.25
blast-formatted database, 2.34.35.3, 2.34.110.25
blending, 2.34.110.31
proximity to surface, 2.34.90.9
images, 2.35.158.2
selection by number, 2.35.66.4
blob, 5.2.4
type, 2.35.182
bold, 2.34.89.38.1
user field, 2.35.54.1
bond angle bending, 2.38.5
atomLabelStyle, 2.22.4
errors, 2.34.90.12
atomSingleStyle, 2.22.5
stretching, 2.38.6
atomic contributions, 2.34.90.20, 2.34.90.21
to protein, 2.34.72.3
coordinate transfer, 2.34.89.3
width, 2.23.9.14
property fieds, 3.18
bonded atoms, 2.35.101.1
fields, 3.15
born radii, 2.34.90.9
solvation contributions, 2.35.7
boundary element, 5.2.5
in residue, 2.35.63
matrix, 2.35.90.10
alternative position, 2.34.89.18
box, 2.35.21
selecting, 2.8.8
break, 2.34.6
translate, 2.34.89.3
brightness, 2.23.5.33
attenuation by occupancy, 2.34.65.25
build, 2.34.7
auc enrichment, 2.37.21
atom, 2.34.7.1
auto saving log, 2.22.11
column, 2.34.7.2
autoSavePeriod, 2.18.1
conf, 2.34.7.3
automated setup, 3.13.1.7
faq, 3.8.1
avi, 2.34.110.31
from string, 2.34.7.5
axis, 5.1.8
helix, 3.10.5
axisLength, 2.19.4
how to, 3.8.1
background, 2.35.29.2
hydrogen, 2.34.7.10
color, 2.19.9
loop, 2.34.7.8
model, 2.34.7.7, 2.34.110.9
sequence, 2.34.7.4
prediction, 2.34.89.11, 2.34.89.12
smiles, 2.34.7.9
state, 2.34.29
string, 2.34.7.5
change, 2.34.89.10
tautomer, 2.34.7.6
chem formula, 2.35.156.10
built-in functions, 5.5.5
chemSuper3D, 2.37.22
plot, 2.34.89.53
atoms, 2.34.14
2D drawings, 2.34.65.9
contact surface, 2.34.14
SMARTS search, 2.34.35.5
molecule, 2.34.13.1
atom annotation, 2.34.22.20
number of bonds, 2.35.137.3
database, 3.5
variables, 2.34.14
cage, 2.37.4
calcArea, 2.37.2
calcBindingEnergy, 2.37.3
diversity, 3.14.6.4
calcDihedralAngle, 2.37.4
calcEnergyStrain, 2.37.20
quality, 2.23.9.15
calcEnsembleAver, 2.37.5
fingerprints, 2.9
calcMaps, 2.37.6
formula, 2.35.156.10
calcPairSeqIdsFromAli, 2.37.7
fragment counting, 2.35.102.2
calcPepHelicity, 2.37.9
functions, 2.28
calcProtUnfoldingEnergy, 2.37.10
keys, 2.34.65.21
calcRmsd, 2.37.11
match coordinates, 2.35.192.6
calcRoc, 2.37.21
calcSeqContent, 2.37.12
models, 2.35.99.1
calcSeqSimilarity, 2.37.8
calculate phases, 3.11.2
name, 2.35.99.6
call, 2.34.8
normalization, 2.34.70
canonical form, 2.35.45
rules, 2.34.70.4
carboxylic acid, 2.34.70.2
cartesian cooridnates, 2.35.192
search, 2.35.56.3
cartridge, 3.5
reaction product generation, 2.34.65.33
cavities, 2.34.92.1
cavity, 5.3.1
similarity, 3.5
analysis, 3.3.13
simplification, 2.35.178
ccp4 maps, 2.34.84.27
cd, 2.34.89.21
structure, 2.34.110.22
cell axis vectors, 2.35.192.8
from smiles, 2.34.89.7
specific icm commands, 5.9.2.4
substructure, 2.34.35.4
mask, 2.34.65.21
cgi programming with icm, 2.11
table, 2.25
symbol, 2.34.89.9
text format, 5.6.11
change atom position, 2.34.89.3
topological descriptors, 2.35.40
sequence position in multiple alignment, 2.34.72.7
view, 2.34.89.54
unix directory, 2.34.89.21
changing local stick radii, 2.34.89.86
chiral isomer generation, 2.34.30
surface dot size, 2.23.5.54
channel, 2.23.14.2
choosing ligands, 3.13.1.2
chroma, 2.35.90.4
compounds, 2.34.70.2
cif, 2.34.84.48
clamp values to range, 2.35.178
label, 2.34.13.5
clashThreshold, 2.19.5
map, 2.34.13.6
clashes, 2.34.65.16
by value, 2.34.23.16
labels, 2.35.166
molecule, 2.34.13.1
classification, 2.35.44.6
names, 2.35.29
clear, 2.34.10
object, 2.34.11.2
graphical selection, 2.34.10
preference, 2.19.10
screen, 2.34.10
specification, 2.34.11.1
click and lock, 5.9.2.4
surface by conservation, 2.34.13.3
table, 2.35.29.3
closer than threshold, 2.35.44.9
volume, 2.34.13.7
closest sequence, 2.35.99.3
column, 5.3.5
value, 2.35.56.1
correlation, 2.34.91.3
cluster, 2.35.154.1
function, 2.34.7.2
center, 2.35.70.9
centers, 2.13.1
of grobs, 2.35.109
selection, 2.35.70.9
selection, 2.35.99
tree, 2.35.99.5
combiRIDGE, 3.13.1.24
size, 2.35.102.1
combinatorial compounds, 2.35.27
libraries, 2.34.65.33, 2.35.102.4
PDB, 2.37.92
cnMethodAverage, 2.22.6
transformations, 3.10.4
cnWeight, 2.19.6
combining plots, 2.34.65.32
code, 2.35.44.6
receptor and ligand stacks, 2.34.4.2
coil, 5.3.4
line editing, 2.2
help, 2.34.45
accessibility, 2.34.13
options, 2.1
background, 2.34.13.2
word list, 3.1.5
example, 3.2.7
accessibility, 3.2.11
communication protocols, 2.32
alignment, 2.34.13.3
comp, 2.35.105
atom contributions, 2.34.12
bfactor, 3.2.9
charge, 3.2.12
angles, 2.34.14.2
electrostatic potential, 2.18.5
atom, 2.34.14.1
hydrophobicity, 3.2.10
by rmsd without superposition, 2.34.14.1
pharmacophore, 2.34.12
chemical tables, 2.34.35.11
potential, 2.37.25
patch only, 2.34.14.3
shape depth, 2.34.13
rmsd, 2.34.14.1
surface, 2.34.14.3
choice, 2.19.9
variables, 2.34.14.2
file, 2.38.15
compareMethod, 2.22.7
grob, 2.34.13.4
comparing two sarrays, 2.35.105
by atom selection, 2.34.13.4.3
comparison, 2.35.70.10
atoms, 2.23.7.1
operations, 2.14.5
map, 2.34.13.4.4
complete view, 2.35.144
matrix, 2.34.13.4.2
compound accessibilities, 3.14.4.1
potential, 2.34.13.4.5
array, 2.25
unique, 2.34.13.4.1
property prediction, 2.34.51.2
alignment, 2.34.15.1
chemical 3D, 2.37.82
binary, 2.34.15.4
and optmimize geometry, 2.37.83
conf, 2.34.15.3
comp, 2.34.18.1
grob, 2.34.15.2
comparison, 2.34.18.1
in place, 2.34.15.4
fragments, 2.34.18.2
objects, 2.34.15
mol, 2.34.18.3
stack, 2.34.15.3
object 3D and optmimize geometry, 2.37.85
compressed table view, 2.34.89.24
macro, 2.37.13
conditional buttons, 5.5.5
string, 2.35.156.7
to 3D, 2.34.89.8
ICM object, 2.37.86
data, 2.35.160.6
iarray, 2.35.166
confgen, 3.17
icm, 2.37.13
configuration, 2.38.14
icm-object, 2.34.18
file, 2.34.110.42
integer, 2.35.166
memory usage, 2.18.7
convert2Dto3D, 2.37.85
conformation comparison, 2.22.7
convert3Dto3D, 2.37.86
conformational ensemble, 2.34.7.7.2
convertObject, 2.37.13
converting a chemical, 2.34.18.3
interpolation, 2.34.23.6
alignment to table, 2.35.160.2
chemicals, 3.13.1.8
compression, 2.34.15.3
table columns into matrix, 2.35.90.6
file, 2.38.7
to, 2.35.123
transition, 2.37.38
cool, 2.37.40
conformer, 3.13.1.22
pictures, 2.23.5.30
cooling schedule, 2.19.46
conformers, 3.17
coordinates, 2.23.14.7
chains with alignments, 2.34.57
copy, 2.34.19
molcart, 2.34.16.1
chemical image, 2.23.9.15
consensus, 2.19.7
file, 2.21.26
site, 2.34.89.28
definitions, 2.23.1
correlation matrix, 2.35.163
consensusStrength, 2.19.7
covalent bound count, 2.35.137.3
conservation, 2.35.122.5, 2.35.136.8
neighbors, 2.35.101.1
constant, 2.5
covalently attached molecule, 2.35.101.1
constants, 2.5
contact areas, 2.35.90
create a covalent bond, 2.34.65.2
continue, 2.34.17
pharmacophore, 2.37.87
contour lines, 2.35.32
creating a local patch object, 2.34.18.2
surfaces, 2.23.7.5
credits, 4.5
contouring density, 2.34.65.14
crypt, 2.34.20
contrast, 2.23.5.33
crystal axis vectors, 2.35.16
conversion, 5.1.6
symmetry transformation, 3.10.2
to real array, 2.35.168
transformations, 2.35.176
crystallographic cell, 2.34.69
3D to chemical, 2.35.27
occupancy, 2.35.107
3D/0D to 2D, 2.34.65.9
symmetry intro, 1.4.2.4
ICM object to PDB, 2.34.96
crystallography, 2.35.129
and reroot, 2.34.18.4
csv format, 2.34.84.44
cube, 2.23.14.2
selection, 2.34.22.37
current, 5.3.9
class, 2.34.22
map, 5.3.7
column table, 2.34.22.16
object, 5.3.8
conf, 2.34.22.17
working directory, 2.35.108
directory, 2.34.22.8
cursor action, 5.9.2.4
disulfide bond, 2.34.22.27
custom alignment color, 2.23.5.1
drestraint, 2.34.22.18
field, 2.34.89.51
element, 2.34.22.31
interaction, 2.34.90.37
file, 2.34.22.9
from array, 2.34.22.6
customization, 3.1.2
hydrogen, 2.34.22.11
environment, 2.33
label, 2.34.22.19, 2.34.22.20
chemical, 2.34.22.20
cyclic temperature protocol, 2.19.46
link, 2.34.22.21
cylinder, 2.23.14.2
map, 2.34.22.22
cz32, 4.5
molcart, 2.34.22.3
data visualization, 2.34.65.38
molecule, 2.34.22.13
database, 5.4.1
object, 2.34.22.12
browser, 2.34.63.3
parray, 2.34.22.36
connection, 2.34.16.1
element, 2.34.22.36
file, 3.5.1
peptide bond, 2.34.22.28
import, 2.34.65.26
plot, 2.34.22.4
date, 2.34.21, 2.35.156.2
salts, 2.34.70.3
array, 2.34.21
selection, 2.34.22.5
dcMethod, 2.22.8
selftether, 2.34.22.34
dcWeight, 2.19.8
sequence, 2.34.22.23
novo, 3.13.1.21
session, 2.34.22.10
shell object, 2.34.22.1
deep learning, 2.34.53
site, 2.34.22.24
defCell, 2.24.1
alignment, 2.34.22.26
defSymGroup, 2.18.2
sstructure, 2.34.22.25
default atom colors, 2.34.89.16
stack, 2.34.22.29
color of label, 2.19.11
object, 2.34.22.30
parameters, 2.22.1
system, 2.34.22.9
value, 5.8.2
table, 2.34.22.32
define axis, 3.10.3
rows, 2.34.22.32
defining space box, 2.35.21
term, 2.34.22.33
dehtml, 2.35.126.3
tether, 2.34.22.35
del, 2.34.22.9
tree, 2.34.22.36
delete, 2.34.22
variable, 2.34.22.6
3D graphics panel, 2.34.105
views, 2.34.22
alias, 2.34.22.2
backbone, 2.35.137.1
array element, 2.34.22.6
restraint, 2.34.22.18
index, 2.34.22.6
deleting, 2.34.22.26
selection, 2.34.22.1
sites by number, 2.34.22.24
atom, 2.34.22.7
delphi, 2.37.25
bond, 2.34.22.14
boundary, 2.34.22.15
fitting, 2.22.8
chemical, 2.34.22.37
in unit cell, 2.34.65.23
fragment, 2.34.22.37
densityCutoff, 2.19.13
window, 2.3, 2.34.23.25
depth-cueing, 2.19.17
desolvation, 2.22.25
averaging, 2.22.6
detecting bad covalent geometry, 2.34.90.12
proximity, 2.35.44.9
geometry, 5.4.4
diagram, 2.34.65.32
matrix, 2.35.160.5, 2.37.7
dialog generation, 2.35.11
between stack conformations, 2.35.90.11
in html documents, 2.34.44
restraint, 5.4.6
tables, 2.34.44
file, 2.38.9
scripting, 2.35.11
type file, 2.38.8
dielConst, 2.19.14
restraints, 2.34.89.22
dielConstExtern, 2.19.15
distances, 2.35.102.3
dielectric constant, 2.19.14
distribution, 1.3, 2.34.65.32
diff, 2.35.105
comparison, 2.35.136
dihedral, 2.37.4
disulfide bond, 5.4.5
angle, 2.34.65.19
diverse subset, 3.14.6.4
calculation, 3.3.10
dividing chemical into individual molecules, 2.35.154.4
dna to protein sequence translation, 2.35.175.1
display, 2.34.23
rna conversion, 2.35.138.1
GUI window, 2.34.23.26
translate, 2.35.175.1
box, 2.34.23.7
dockBatch, 3.13.1.7
dockScan, 3.13.1.18
contact, 2.34.65.16
docking, 2.37.89
drestraint, 2.34.23.9
intro, 3.13.1.5
field, 2.23.5.3
result viewing, 2.37.28
from script, 2.34.23.3
simple models, 3.14.3
gradient, 2.34.23.10
timing, 3.13.1.3
grob, 2.34.23.11
with template, 3.13.1.19
label, 2.34.23.12
docksub, 3.13.1.20
gui, 2.34.23.26
docksyb.icm, 3.13.1.20
hbond, 2.34.23.13
documents, 5.5.8
label, 2.34.23.15
dollar separated file, 2.34.84.44
map, 2.23.5.13, 2.34.23.16
dominant color, 2.35.29.2
model, 2.34.23.1
donor, 3.6.1
new, 2.34.23.2
plot intro, 1.4.3.2
off-screen, 2.34.23.3
dots, 2.34.78
offscreen, 2.34.23.3
dotted surface, 2.23.5.56
origin, 2.34.23.4
double click action, 5.9.2.4
ribbon, 2.34.23.18
drestraint, 2.34.90.18, 5.4.6
rotate, 2.34.23.5
generate from structure, 2.34.65.7
site, 2.34.23.19
global weight, 2.19.6
skin, 2.34.23.20
set, 2.34.89.22
slide, 2.34.23.21
type, 5.4.7
stack, 2.34.23.6
drop, 2.19.16
string, 2.34.23.22
drug, 2.12
surface, 2.34.23.20
ds3D, 2.37.31
area, 2.23.5.3
dsCellBox, 2.37.15
tethers, 2.34.23.23
dsChem, 2.37.17
trajectory, 2.34.23.17
dsCustom, 2.37.18
volume, 2.34.23.24
dsPocket, 2.37.28
dsPrositePdb, 2.37.24
chiral, 2.34.30
library, 2.34.32
dsSeqPdbOutput, 2.37.26
tautomer, 2.34.31
dsSkinLabel, 2.37.27
enumeration, 2.35.27
dsStackConf, 2.37.29
eps files, 2.21.23
dsVarLabels, 2.37.30
equipotential surface, 2.35.32
dsXyz, 2.37.32
error SOAP services, 2.35.49
dump database, 2.34.110.7
ignoring, 2.21.25
dynamic gui, 5.5.5
error/warning bits cleanup, 2.34.10
ecepp, 5.5.1
errorAction, 2.22.10
edit, 2.34.24
vrestraint vs_var, 2.34.89.82
files, 2.23.14.1
evalSidechainFlex, 2.37.90
eigen value factorization, 2.35.45
evol tree intro, 1.4.3.5
eigendecomposition of a matrix, 2.35.45
evolutionary tree intro, 1.4.3.5
eigenvalues, 2.35.45
exact, 2.34.35.10, 2.34.35.11
eigenvectors, 2.35.45
match, 2.35.126.1
electro intro, 1.4.2.9
example scripts, 3.14
electroMethod, 2.22.9
excel, 2.34.84.44, 2.34.110.10
exit, 2.34.34
around selection, 2.19.25
exitSeslogStyle, 2.22.11
map generation, 2.19.1
expanding substructure match, 2.34.89.70
maps, 2.23.14.1
export, 2.34.110.7
electrostatic boundary matrix, 2.35.90.10
animation, 2.34.110.31
coloring, 2.23.14.6
pdb, 2.23.14.14
isopotential surfaces, 2.34.65.13
exporting sdf, 2.34.110.11
potential, 2.34.13.4.5
expression shortcuts, 2.10.1.2
solvation, 3.7.2
tags, 2.24.9
surface, 2.37.25
comparison, 2.14.5
troubleshooting, 5.7.13
arithmetics, 2.14.2
electrostatics, 2.23.14.6
assignment, 2.14.1
intro, 1.4.2.9
comparison, 2.14.5
elements, 2.23.9.16
logical, 2.14.3
ellipsoid, 2.35.163
extending to bonded hydrogens, 2.35.137.6
elseif, 2.34.25
terminal atoms, 2.35.137.6
empty model, 2.35.109
external process, 2.34.65.1
enamine, 3.18
extracting from Markush, 2.34.55
endfor, 2.34.26
icm script arguments, 2.35.59
endif, 2.34.27
stack from object, 2.34.63.5
endmacro, 2.34.28
ez25, 3.7
endwhile, 2.34.33
factor, 5.8.13
energetics, 3.7
false negatives, 2.35.136.5
function, 2.23.14.3
family, 2.34.89.38.1
profile, 2.37.84
faq, 1.3
terms, 2.17
cheminformatics, 3.14.6
chemsuper, 3.14.5
average, 3.7.5
mac gui preferences, 3.14.6.2
entropy of alignment, 2.35.136.8
molcart dump, 3.14.6.3
atom, 2.34.18.4
query, 3.14.6.1
multiple chem overlay, 3.14.5.1
charge, 2.34.29
residue table, 3.14.4.1
sequence search, 2.34.35.3
fix, 2.34.36
fasta, 2.23.12.15, 5.5.2
fixed branches, 2.35.137.2
format, 2.34.110.1
flattening 3D molecule, 2.37.17
feature table, 5.8.6.1
flexible superimpose, 2.37.50
in sequences, 2.34.89.26
flow control, 2.15
ffMethod, 2.22.12
field, 2.34.89.35
color, 2.19.17
name, 2.35.99.2
fogStart, 2.19.17
file, 2.34.110.24
fold search, 5.8.4
exists, 2.35.50
foldbank.db, 2.38.3
list, 2.35.59
folding procedure, 3.14.1
length, 2.35.55
font, 2.34.58.1
object origin, 2.35.55
size, 2.34.89.38.1, 2.38.14
permissions, 2.35.55
sizes, 3.14.6.2
time modified, 2.35.55
specification, 2.34.89.38.1
type, 2.35.55
for, 2.34.37
files, 2.38
filling volume, 2.23.5.11
filter, 2.34.35.11, 2.34.63.3
formatdb, 2.34.110.25
functions, 5.5.4
fprintf, 2.34.39
filtering table rows, 5.5.4
fractional coordinates, 2.35.192.4
find, 2.34.35
to abs coordinates, 2.35.16
alignment, 2.34.35.1
and replace a chemical pattern, 2.34.70.1
fragmented molecule, 2.34.18.2
chemical fragment, 2.34.70
frame, 2.34.94, 2.34.110.31
chemical, 2.34.35.5
free starin, 2.35.136.3
pattern, 2.34.70
fullscreen, 2.34.89.85
substructure, 2.35.70.2
columns, 2.34.1.1.1
fast, 2.34.35.3
functions, 5.1.1
family of commands, 2.34.35
selecting in objects, 2.8.10
in sarray, 2.35.70.8
gamess, 5.5.6
expansion, 2.35.146.4
enumerate, 2.34.35.9
gapExtension, 2.19.18
molecule, 2.34.35.4
gapFunction, 2.24.3
motifs, 2.24.9
gapOpen, 2.19.19
pattern, 2.34.35.8
gaussian averaging, 2.35.146.2
pdb, 2.34.35.6
gcMethod, 2.22.13
pharmacophore, 2.34.35.12
genbank, 2.23.12.15
prosite, 2.34.35.7
generalized arrays, 5.1.6
scaffold, 2.35.179
generate intermediate conformers, 2.37.38
table, 2.34.35.11
generating movie images, 3.9.2.1
genomics, 1.4.3.1
findFuncZero, 2.37.35
clustering, 2.34.43.2
findSymNeighbors, 2.37.16
intro, 1.4.3.1
find_related_sequences, 2.37.33
geometry optimization, 2.34.66.1
finding long covalent bonds, 2.35.137.1
started, 1.7
fingerprint, 2.35.41
getting data from outside, 2.32
fingerprints, 2.9
started, 1.7
to density, 2.22.8
giga, 3.18
giga-sized, 3.18
ginger, 3.13.1.22
table, 5.3.6
global, 2.34.41
haze, 2.19.17
glossary, 5
hb, 2.19.21
go, 2.35.44.6
hbCutoff, 2.19.21
goto, 2.34.42
term, 2.19.20, 2.34.89.73
color, 2.34.23.14
gpWeights, 2.19.20
gpu, 3.13.1.23
energy, 2.34.23.14
graph matching, 2.35.133
list, 2.35.160.10
graphical box, 2.34.23.7
show, 2.34.90.23
row selection, 2.35.70.5
hbondMinStrength, 2.23.5.25
selection, 2.35.137.5
faq, 3.3.4
how to, 3.3.4
card, 2.23.5.52
header, 2.34.1.1
helical axis, 2.37.36
exists, 2.35.50
cylinders, 2.23.5.42
helicity, 3.7.6
learning, 3.2.1
content calculation, 3.7.6
attributes, 2.19.4
fogStart, 2.19.17
browser, 2.34.45.1
view vector, 2.34.89.80
commands, 2.34.45.3
graphviz, 2.35.160.7
functions, 2.34.45.4
greedy matching, 2.10.1.4
getting, 3.1.1
grid energy, 2.34.90.21
word, 2.34.45.2
potentials, 2.34.65.25
getting, 3.1.1
heterogenous environment, 2.23.14.2
coloring, 2.34.13
hidden blocks, 5.1.1.1
files, 2.38.10
display, 2.34.23.3
inside-out flip, 2.34.89.42
hydrogens, 2.23.5.32
normal directions, 2.34.89.42
stack in object, 2.34.94.2
vertex, 2.23.5.21
hierarchical, 2.13
translate, 2.34.103
highEnergyAction, 2.22.14
group, 2.34.43
his-tags, 2.35.180
by column, 2.34.43.4
histogram, 2.34.65.32
column, 2.34.43.4
2D, 2.35.90
rename of table columns, 2.34.85.1
history, 2.34.46, 2.34.110.40
replacement, 2.34.68
delete, 2.34.22.10
select of table columns, 2.34.88.2
of ICM, 1.2
sequence, 2.34.43.1
hitlist, 3.13.1.17
unique, 2.34.43.2
homodel, 2.37.41
table, 2.34.43.3
grouping table by a column, 2.34.89.24
faq, 3.14.4
intro, 1.4.2.2
exists, 2.35.50
output, 2.34.7.7.3
functions, 5.5.5
steps, 2.34.7.7.1
panels, 2.34.105
to export a molcart table, 3.14.6.3
gvim text editor, 5.8.2
document order, 2.34.89.40
gzip files, 2.34.15.4
tag removal, 2.35.126.3
html5, 2.11
bst, 2.38.6
hue, 2.35.90.4
cfg, 2.38.14
clr, 2.38.15
parameters, 2.38.13
cmp, 2.38.33
cn, 2.38.9
bonding parameters, 2.38.12
cnf, 2.38.7
cutoff, 2.19.21
cnt, 2.38.8
bonds, 2.35.102.3
cod, 2.38.4
display, 2.23.5.32
col, 2.38.24
placement, 2.34.89.25
gro, 2.38.10
hydrophobicity profile, 3.3.12
gui, 2.33
iSee, 5.8.14
hbt, 2.38.12
i_2out, 2.18.4
hdt, 2.38.13
i_out, 2.18.3
htm, 2.38.11
iar, 2.38.35
making, 2.35.66.1
lps, 2.34.7.7.2
icb files, 5.8.14
map, 2.38.16
GUI, 2.34.89.40
mat, 2.38.37
algorithms, 4.3
ob, 2.38.18
application refs, 4.4
pdb, 2.38.28
literature, 4.3
prf, 2.38.34
archive, 2.34.84.2
rar, 2.38.38
arguments, 2.35.59
res, 2.38.20
binary, 2.35.108
rs, 2.38.23
branching, 2.15.2
rst, 2.38.22
commands, 2.34
sar, 2.38.36
controls, 2.15
se, 2.38.30
flags, 2.1
seq, 2.38.29
functions, 2.35
tab, 2.38.25
graphics, 3.2
tot, 2.38.26
history, 1.2
trj, 2.38.17
jumps, 2.15.3
var, 2.38.21
learning, 3.1.4
vwt, 2.38.27
loops, 2.15.1
icmCavityFinder, 2.37.14
macros, 2.37
icmMacroShape, 2.37.88
main refs, 4.2
icmPmfProfile, 2.37.23
menus, 2.23.10.1
icmPocketFinder, 2.37.89
method literature, 4.4
icmscript, 2.34.84.4
molecules, 2.16
arguments, 2.35.59
object, 2.37.13
if, 2.34.47
file, 2.38.18
ignoring swiss secondary structure, 2.24.10
preferences, 2.22.1
illegal smiles, 2.35.70.2
session, 2.22.11
image, 3.2.6
shell, 3.1
annotation, 3.2.5
functions, 2.36
center, 3.2.8
support, 1.3
format, 5.9.3
table, 2.23
high quality, 3.2.2
ali, 2.38.31
parray, 5.7.3.3
all, 2.38.32
resolution, 3.2.2
bbt, 2.38.5
rotation, 3.2.3
solvation, 2.34.89.72
kernel models quality, 2.35.136.5
imposing tether, 2.34.89.68, 2.34.89.69
mapping, 2.38.15
place, 2.14.4
kmz, 5.5.3
ops, 2.14.4
l_antiAlias, 2.20.1
incidence, 2.35.90.13
l_autoLink, 2.20.2
increasing the number of shell variables, 2.38.14
l_bpmc, 2.20.3
increment charge, 2.34.89.10
l_breakRibbon, 2.20.4
index expressions, 2.6
l_bufferedOutput, 2.20.5
in array, 2.35.70.4
l_bug, 2.20.6
substring, 2.35.70.3
l_caseSensitivity, 2.20.7
table, 2.34.110.24
l_commands, 2.20.8
entry, 2.35.135.1
l_confirm, 2.20.9
sdf-file path, 2.35.108
l_easyRotate, 2.20.10
indices of labeled table rows, 2.35.70.6
l_info, 2.20.11
selected table rows, 2.35.70.5
l_minRedraw, 2.20.12
infinity, 2.35.168
l_neutralAcids, 2.20.13
info, 2.34.48
l_out, 2.20.14
molcart, 2.34.48.1
l_print, 2.20.15
inner join, 2.34.50
l_racemicMC, 2.20.16
insert rows, 2.34.1.4
l_readMolArom, 2.20.17
integer, 5.6.2
l_showAccessibility, 2.20.18
l_showMC, 2.20.19
output, 2.18.4
l_showMinSteps, 2.20.20
shell variables, 2.18
l_showResCodeInSelection, 2.20.21
intensity, 2.35.90.4
l_showSites, 2.20.23
interaction cutoff, 2.20.27
l_showSpecialChar, 2.20.22
l_showSstructure, 2.20.24
interactive docking, 1.4.2.8
l_showTerms, 2.20.26
l_showWater, 2.20.25
potential, 2.34.89.51, 2.34.90.37
l_updateLists, 2.20.27
interface comparison, 2.34.14.3
l_warn, 2.20.28
residues, 3.3.5
l_wrapLine, 2.20.29
torsions, 3.3.7
l_writeStartObjMC, 2.20.30
view, 2.37.28
l_xrUseHydrogen, 2.20.31
intermolecular bond, 2.34.72.3
label, 2.34.23.22, 5.6.3
internal coordinate file, 2.38.21
fonts, 2.38.15
coordinates, 2.8.9
large text, 2.34.84.40
positional restraints, 5.9.4
latent, 2.35.102.6
interplanar angle, 2.37.4
interpolate, 2.35.29.1
ann, 2.34.53
interpolation, 2.35.29.1
atom, 2.34.51.1
interruptAction, 2.22.15
chemical, 2.34.51.2
inverting array order, 2.35.66.2, 2.35.122.2
left join, 2.34.50
italic, 2.34.89.38.1
triangle of a matrix, 2.35.90.3
iterative overlay, 2.34.97
ligand based screening, 3.15
javascript, 2.11
binding, 2.37.28
join, 2.34.50
tables, 2.34.50
intro, 1.4.2.6
keep, 2.34.49
editing, 1.4.2.8
fit, 3.13
logicals, 2.20
view, 2.23.5.31
long axes, 2.35.163
ligand-based, 3.18
loop database rebuilding, 2.34.110.28
ligandAIDE, 3.13.1.21
interrupt, 2.19.47
light, 2.23.5.34
library, 2.34.7.7.2
lightness, 2.35.90.4
modeling, 1.4.2.3
limits, 2.38.14
intro, 1.4.2.3
line thickness, 2.23.12.5
search, 2.34.7.7.2
in 2D chemicals, 2.23.9.14
resolution shape, 2.37.88
lineWidth, 2.19.22
lower case, 2.35.167
linear chemical notation, 2.26
ma29, 3.11
regression, 2.35.84
grob, 2.34.54
macro_def, 5.6.5
group, 2.34.55
main ICM references, 4.2
internal variables of molecular object, 2.34.56
concepts, 3.10.1
ms2ali, 2.34.57
make, 2.34.65
sequences to 3D objects, 2.34.57
3d label, 2.34.65.15
to alignment, 2.34.57
angle, 2.34.65.18
variable, 2.34.56
background, 2.34.65.1
variables, 2.34.56
blast index, 2.34.110.25
linked alignment, 2.35.99
bond, 2.34.65.2
sequence, 2.35.99
chain, 2.34.65.3
multi, 2.34.65.3
list, 2.34.58
boundary, 2.34.65.4
binary, 2.34.59
directory, 2.34.65.5
database, 2.34.60
distance, 2.34.65.16
directory, 2.34.61
disulfide bond, 2.34.65.6
font, 2.34.58.1
drestraint, 2.34.65.7
html documents, 2.35.99
factor, 2.34.65.8
molcart, 2.34.62
flat, 2.34.65.9
database, 2.34.62
chem_array, 2.34.65.9
of files, 2.35.135
grob, 2.37.36
updates, 2.34.66
from image, 2.34.65.11
listUpdateThreshold, 2.19.23
matrix, 2.34.65.12
literature, 4.1
image, 2.34.65.11
load, 2.34.63
map, 2.34.65.10
conf, 2.34.63.1
matrix, 2.34.65.12
frame, 2.34.63.2
potential, 2.34.65.13
molcart, 2.34.63.3
skin, 2.34.65.14
object, 2.34.63.6
hbond, 2.34.65.17
solution, 2.34.63.4
image, 2.34.65.20
stack object, 2.34.63.5
index fasta, 2.34.84.24, 2.34.110.24
loadEDS, 2.37.42
key, 2.34.65.21
loadEDSweb, 2.37.43
map, 2.34.65.22
local, 3.5.1
cell, 2.34.65.23
logarithm, 2.35.85
factor, 2.34.65.24
logical, 5.6.4
potential, 2.34.65.25
operations, 2.14.3
xray, 2.34.65.31
variables, 2.20
molcart, 2.34.65.26
logical_ops, 2.14.3
molsar, 2.34.65.27
peptide bond, 2.34.65.30
map value, 2.35.91
plot, 2.34.65.32
reaction, 2.34.65.33
maxMemory, 2.18.7
sequence, 2.34.65.35, 2.34.65.36
movie, 3.9.2
alignment, 2.34.65.34
mcBell, 2.19.26
from alignment, 2.34.65.34
mcJump, 2.19.27
random, 2.34.65.36
mcShake, 2.19.28
torsion, 2.34.65.19
mcStep, 2.19.29
tree, 2.34.65.37
mean force, 2.34.89.51, 2.34.90.37
object, 2.34.65.38
median value, 2.35.93
unique, 2.34.65.39
makeAxisArrow, 2.37.36
memorizing positions, 3.2.4
makeIndexChemDb, 2.37.44
menu, 2.34.67
makeIndexSwiss, 2.37.45
script, 3.1.3
makePdbFromStereo, 2.37.46
merge PDB, 2.37.92
makePharma, 2.37.87
arrays to table, 2.34.43.3
makeSimpleDockObj, 2.37.47
continuation lines, 2.34.84.39
makeSimpleModel, 2.37.48
objects, 2.34.72.2
making predictive models, 2.34.51
parts of molecule, 2.34.72.3
manual style, 1.5
pdb, 3.4.4
sarray into string, 2.35.158
aa property to sequence, 2.35.122.1
stacks, 3.7.7
averaging, 2.35.146.5
calculation, 2.34.65.24
merge2, 3.8.7
conversion, 2.34.65.31
mergePdb, 2.37.92
file, 2.38.16
several chemical, 2.35.158.1
fitting, 2.22.8
merging into one molecule, 2.34.72.3
format, 5.6.6
mean value, 2.35.94
point radius, 2.23.5.21
min value, 2.35.95
score, 3.13.1.12
name, 2.35.86
mfMethod, 2.22.16
operations, 5.6.6
mfWeight, 2.19.30
transformations, 2.35.146.5
mimel, 5.6.8
trimming, 2.35.22
mimelDepth, 2.19.31
value sigma, 2.35.133
mimelMolDensity, 2.19.32
on atoms, 2.34.89.36
minNumGrad, 2.34.66
contouring, 2.34.65.14
minTetherWindow, 2.18.8
mapAtomMargin, 2.19.25
minimization exit criteria, 2.34.66
mapSigmaLevel, 2.19.24
mapping chemical equivalences, 2.35.70
cartesian, 2.34.66.1
properties to sequence, 2.35.122.4
loop, 2.34.66.2
and factors, 3.11
stack, 2.34.66.3
margin, 2.23.6.1
drop, 2.19.16
matching chemicals, 2.35.70.2
minimizeMethod, 2.22.17
hydrogens, 2.34.89.70
missing bonds, 2.34.72.3
matrix, 5.6.7
derivatives, 2.35.80
residues, 2.35.54.1
new, 2.35.90.1
triangles, 2.35.189
plot, 2.35.32
mkUniqPdbSequences, 2.37.49
mm26, 3.8
mmcif, 5.6.10
sort/reorder, 2.34.91.5
mmff, 5.6.9
selecting, 2.8.6
type, 2.35.182
show atom types, 2.34.90.11
monte carlo, 2.34.71
mnSolutions, 2.18.9
mncalls, 2.18.10
local, 2.18.16
mncallsMC, 2.18.11
trajectory, 2.34.23.17
mnconf, 2.18.12
moprphing, 2.37.38
mnhighEnergy, 2.18.13
more, 5.6.13
mnreject, 2.18.14
morph, 2.34.23.6
mnvisits, 2.18.15
to tether target, 2.37.38
model reliability, 2.37.23
morph2tz, 2.37.38
modify, 2.34.68
and reroot, 2.34.18.4
mouse controls, 2.3
chem, 2.34.70
file, 2.34.110.31
charge, 2.34.70.2
move, 2.34.72
delete salt, 2.34.70.3
alignment sequence, 2.34.72.7
normalize, 2.34.70.4
atoms, 2.34.89.3
chemical column, 2.34.70.3
bonding, 2.34.72.3
find replace, 2.34.70.1
column, 2.34.72.5
molcart, 2.34.70.5
element, 2.34.72.4
rotate, 2.34.69
modifyGroupSmiles, 2.37.37
fragments together, 2.34.72.3
modules, 1.4.4
ligand out, 2.34.92.6
molecule, 2.34.72.1
file, 2.35.156.3
ms_molecule, 2.34.72.1
to icm, 2.34.18.3
multiple molecules, 2.34.72.2
translation, 3.2.4
object, 2.34.72.2
mol-file to chem-table element, 2.35.109
plane, 2.34.72.6
mol-format, 2.23.14.7
sequence, 2.34.72.7
mol2, 5.6.12
table column, 2.34.72.5
movie, 2.34.94.3
connection options, 3.5.2
images by frame, 3.9.2.2
molecular simulation, 3.9.2
arrays, 5.7.3
rotate view, 3.9.1
dynamics, 3.19
zooming, 3.9.1
manipulations, 3.8
moving grobs with molecules or objects, 2.34.54
modifications, 3.8.5
selection to another object, 2.35.137.8
object, 5.7.1
mpeg, 2.34.110.31
objects, 2.16
ms_, 2.8.6
multi center drestraint, 2.22.6
views, 1.4.1.1
multi-part molecule, 2.34.18.2
volume, 2.35.114
multicore, 2.35.70.1
multiline input, 2.34.84.5
create, 3.8.4
multiple NMR models, 2.23.14.5
properties, 2.34.89.34
alignment, 2.34.3.3
rotation, 3.2.3
to pairwise similarities, 2.37.7
conformation storage, 5.8.9
create, 1.7.2
mol as text, 2.35.156.3
source file, 2.35.55
object file, 2.34.84.2
translate, 2.34.103
sequence alignment intro, 1.4.3.4
merge, 3.8.6
smiles file format, 2.34.84.46
selecting, 2.8.5
multiprocessor, 2.34.38
obsolete, 2.19.54
mutate residue, 2.34.68
occlusion shading, 2.34.13
mutating residue, 3.8.5
octanol transfer, 2.35.114
mute, 5.6.15
off, 2.34.84.22
mysql, 2.34.16.1
format, 5.5.3
nLocalDeformVar, 2.18.16
oligonucleotide melting, 2.35.164
nProc, 2.18.18
nSsearchStep, 2.18.17
third, 2.35.37
name, 2.35.79
only, 5.7.2
atom fields, 2.34.89.34
ontology, 2.35.44.6
naming compounds, 2.34.89.47
openGL window, 2.34.105
nearest sequence, 2.35.95
neato, 2.35.160.7
optimal chemical superposition, 3.14.5.1
neighbor joining, 2.34.65.38
optimization, 2.34.71
neighbors, 2.35.151
Hbond, 2.37.91
nested script, 5.8.2
hydrogen bond, 2.37.91
neural network, 2.34.53
optimizeHbonds, 2.37.91
real array, 2.35.122
or, 2.14.3
nice, 2.37.39
image, 3.2.2
original sequence names, 2.23.12.15
non-redundant, 3.4.3
os_, 2.8.5
normal distribution, 2.35.121
other variables, 2.24
normalize chemicals, 2.34.70.4
out-of density atoms, 2.34.90.21
defined, 2.35.168
output, 2.18.3
nota, 1.5
outside penalty, 2.23.6.1
notational conventions, 1.5
overlap, 2.35.70.10
nproc, 2.34.38
by atom pairs, 2.34.97
nucleotides, 2.21.24
chemical substructure, 2.37.22
number, 2.18.18
overview, 1.4
of dots, 2.23.5.55
pK shift, 3.7.3
elements, 2.35.102
hydrogen bonds, 2.34.90.23
model, 2.34.89.12
molecules in objects, 2.35.137.4
packing density, 3.3.8
occurrences, 2.35.102
pair-distances, 2.34.22.6
residues in molecules, 2.35.137.4
pairdistance parray, 2.23.5.24
van der Waals contacts, 2.34.90.13
pairwise interactions, 2.34.89.51
transfer from sequence, 2.34.3.2
panel layout, 2.23.8.6
nvis, 2.35.66.6
paragraphs, 2.34.110.24
parallel, 2.18.18
in table, 2.35.109
computing, 2.35.70.1
parray, 5.7.3.1
processing, 2.34.38
properties, 2.34.89.34
parallelization, 2.35.70.1
stack, 5.8.9
parameter list file, 3.14.6.2
to chemarray, 2.35.27
user fields, 2.35.54.1
parrayTo3D, 2.37.83
assign comment, 2.34.89.17
parrayToMol, 2.37.82
parsing, 2.35.89
plotRama, 2.37.58
web pages, 2.34.84.47
plotRose, 2.37.59
partial least squares, 2.34.51
plotSeqDotMatrix, 2.37.52
slide display, 2.34.23.21
plotSeqDotMatrix2, 2.37.53
sum, 2.35.77
plotSeqProperty, 2.37.60
passing arguments, 5.8.2
3d, 1.4.3.7
by reference, 2.34.64
plotting van der Waals, 3.7.1
pattern, 5.7.4
faq, 3.7.1
search, 2.34.35.2
pls, 2.34.51
pause, 2.34.73
column contributions, 2.35.160.8, 2.35.160.9
model, 2.35.160.8, 2.35.160.9
file creation time, 2.35.38
weights, 2.35.160.8, 2.35.160.9
files, 2.38.28
pmf, 2.22.16
format, 2.34.84.48
residue profile, 2.37.23
merge, 3.4.4
pmf-file, 2.38.19
sequence generation, 3.4.3
pmffile, 2.38.19
pdbDirStyle, 2.22.18
peptide, 5.7.7
docking, 3.12.5
point coordinates, 2.35.192.1
folding, 1.4.2.1
size, 2.23.5.21
intro, 1.4.2.1
pointer array, 5.7.3
personal gui controls, 3.1.2
polar hydrogens, 2.23.5.32
setup, 3.1.2
surface area, 2.35.114
ph30, 3.12
ph4, 5.7.8
positional constraint, 2.23.14.12
object faq, 3.6.1
postscript, 2.21.23
potential surface, 2.23.14.6
faq, 3.6
coloring, 5.7.13
grid type definitions, 2.34.89.73
pov-ray, 2.34.110.38
object, 3.6.1
pow, 2.35.37
objects, 3.6
precision, 2.35.136.5
pharmacophores, 3.6
predict, 2.34.76
psi plot, 2.37.58
predictSeq, 2.37.61
pipe, 2.27, 2.34.84.43
prediction model, 2.35.84
piping, 2.27
quality, 2.35.136
placeLigand, 2.37.50
score, 2.35.136
planar angle, 2.34.65.18
predictive models, 2.34.51.2
plot, 2.34.65.32, 2.34.74
preference, 2.22
3D 2Dfunction, 3.12.3
system, 2.22.1
shape, 3.12.4
preferences, 3.1.2.3
area, 2.34.75
prepSwiss, 2.37.62
grid line width, 2.23.12.5
previous atom, 2.35.101.1
histogram, 3.12.2
principal axes, 2.35.163
how to, 3.12
component analysis, 3.3.9
simple, 3.12.1
inertia moments, 2.35.88
plot2DSeq, 2.37.51
print, 2.34.77
plotBestEnergies, 2.37.54
bar, 2.34.78
plotCluster, 2.37.56
image, 2.34.80
plotFlexibility, 2.37.55
to string, 2.34.93
plotMatrix, 2.37.57
printMatrix, 2.37.63
printTorsions, 2.37.65
coordinates, 2.34.83
printf, 2.34.79
torsions, 2.34.83
problem, 3.14.6.2
processors, 2.18.18
properties, 2.35.122.4
profile, 2.35.136.3, 5.7.9
rdBlastOutput, 2.37.68
program overview, 1.4
rdSeqTab, 2.37.69
progress bar, 2.34.78
reaction, 2.34.65.33
progression, 2.34.78
group file, 2.34.55
project setup, 3.13.1.6
projected alignment, 2.35.99.3
FILTER, 2.34.84.6
projecting surface charge, 3.7.2
alignment, 2.34.84.12
all, 2.34.84.7
grids, 2.19.20
binary, 2.34.84.2
map, 2.34.89.73
blob, 2.34.84.38
superposition, 2.34.89.73
color, 2.34.84.13
prosite, 5.7.10
column, 2.34.84.51
pattern, 5.7.4
comp_matrix, 2.34.84.14
protac, 3.16
conf, 2.34.84.15
protein docking, 2.35.192.3
csd, 2.34.84.16
intro, 1.4.2.5
csv, 2.34.84.44
engineering, 2.24.9
database, 2.34.84.17
grid docking, 3.14.2
drestraint, 2.34.84.18
health, 2.37.58
type, 2.34.84.19
topology, 2.23.5.42
entries from database, 2.34.84.8
protonation states table, 2.35.160.11
factor, 2.34.84.20
psa, 5.7.12
file by chunk, 2.34.84.40
purple box, 2.35.21
from file, 2.34.84.1
qstat, 3.13.1.20
string, 2.34.84.5
qsub, 3.13.1.20
fromstring, 2.34.84.5
quadratic equation, 2.35.147
ftp http, 2.34.84.9
quantum mechanics, 2.34.84.21, 2.34.110.17
gamess, 2.34.84.21
qubic equation, 2.35.148
grob, 2.34.84.22
query, 3.14.6.1
gui, 2.34.84.3
molcart, 2.34.81
html, 2.34.84.4
question mark operator, 2.35.156.7
file, 2.34.84.4
quit, 2.34.82
iarray, 2.34.84.23
property transfer via alignment, 2.35.122.3
index, 2.34.84.24
r_2out, 2.19.34
table, 2.34.84.8
r_out, 2.19.33
json, 2.34.84.57
radii.electrostatic, 2.35.120
library, 2.34.84.25
van der Waals, 2.35.120
mmff, 2.34.84.26
rainbow, 2.35.29.1
librarymmff, 2.34.84.26
ramachandran faq, 3.3.3
map, 2.34.84.27
how to, 3.3.3
matrix, 2.34.84.28
random array, 2.35.121
menu file, 2.34.84.3
order, 2.35.139
sequence, 2.34.65.36
mol2, 2.34.84.8, 2.34.84.30
randomSeed, 2.18.19
object, 2.34.84.32
parray, 2.34.84.32.1
angles, 2.34.83.1
profile, 2.34.84.35
refresh view, 2.34.23.2
prosite, 2.34.84.36
refs, 4.1
rarray, 2.34.84.37
sarray, 2.34.84.39, 2.34.84.40
back references, 2.10.1.3
sequence, 2.34.84.8, 2.34.84.41
syntax, 2.10.1
database, 2.34.84.41.1
regression, 2.34.51
smiles, 2.34.84.46
regul, 2.37.67
stack, 2.34.84.42
string, 2.34.84.43
filter, 2.34.84.1
table, 2.34.84.44
expression, 2.35.126.3
chunk, 2.34.84.45
csv, 2.34.84.44
procedure, 3.8.3
html, 2.34.84.47
rejectAction, 2.22.19
mmcif, 2.34.84.48
relational database, 2.35.149
mol, 2.34.84.50
relative accessible area of atoms, 2.22.2
mol2, 2.34.84.49
release notes, 1.1
text, 2.34.84.40
remarkObj, 2.37.70
trajectory, 2.34.84.31
remove columns, 2.34.22.16
and save a fragment, 2.34.84.31.1
expression tags, 2.35.180
write, 2.34.84.31.1
file, 2.34.22.9
unix, 2.34.84.10
trailing blanks, 2.35.178
cat, 2.34.84.11
removing html tags, 2.34.84.47
variable, 2.34.84.52
outliers, 2.35.178
view, 2.34.84.53
vrestraint, 2.34.84.54
chemicals, 2.34.89.47
type, 2.34.84.55
column table, 2.34.85.1
with filter, 2.34.84.6
file, 2.34.85.3
xml, 2.34.84.56
molcart, 2.34.85.2
readMolNames, 2.24.11
system, 2.34.85.3
readcomp_matrix, 2.34.84.14
renaming, 2.23.12.15
reading external tool output, 2.34.65.1
reorder, 2.34.72.7
from standard input, 2.34.84.43
alignment sequences, 2.34.110.1
pdb from ftp, 2.21.18
array, 2.35.139
web, 2.21.19
columns by function, 2.34.91.3
restraint, 2.34.84.54
objects, 2.34.91.4
replace matching array element, 2.35.126.1
array, 5.7.11
without interpretation, 2.35.126.2
shell variables, 2.19
replacing scaffold in a library, 2.34.70.1
space refinement, 2.34.65.31
reproducible randomness, 2.18.19
reals, 2.19
reroot, 2.34.18.4
selections, 3.3.6
rebuild molcart index, 2.34.7.11
resLabelShift, 2.19.35
recalculate dependent values, 2.34.7.2
resLabelStyle, 2.22.20
values, 2.34.1.1.1
reserved names, 2.24
receptor, 3.13.1.1
preparation, 3.13.1.1
accumulators, 2.35.63
redefine hydrogen coordinates, 2.34.89.25
alignment, 2.34.89.68, 2.34.89.69
references, 4
conservation, 2.35.122.5
refineModel, 2.37.66
contact area matrix, 2.35.90.8
reflections, 2.23.5.33
areas, 2.35.7.1
root mean square deviation, 2.35.136.5
library file, 2.38.20
rotate, 2.34.87
name, 2.35.79
2D-chem in a table column, 2.34.87.4
translation, 2.23.14.14
chem, 2.34.87.4
number, 2.35.66.5
grob, 2.34.87.2
table, 2.35.160.3
object, 2.34.87.1
property averaging, 2.35.146.3
view, 2.34.87.3
calculation, 2.35.63
rotation, 2.34.23.5
proximity, 2.35.90.8
angle, 2.35.17
ranges, 2.8.11
rounding, 2.35.122
selection, 2.20.21
a real, 2.35.156
as string, 2.35.156.8
output, 2.34.90.45
function, 2.35.127
rsWeight, 2.19.36
table, 3.14.4.1
rs_, 2.8.7
tethering, 2.34.89.68, 2.34.89.69
ruler, 2.19.10
user field, 2.35.54.1
script, 2.34.8
residue_selections, 2.8.11
running a docking job, 3.13.1.18
selecting, 2.8.7
dock job, 3.13.1.9
resizing, 2.35.68
script from html, 5.8.2
resorting nodes edges, 2.35.160.7
s-s bond, 5.4.5
restore, 3.14.6.2
s_alignment_rainbow, 2.21.1
defaults, 2.34.85.4
s_blastdbDir, 2.21.2
preference, 2.34.85.4
s_editor, 2.21.3
restraining molecules to shapes, 2.23.14.12
s_entryDelimiter, 2.21.4
restraint, 3.19
s_errorFormat, 2.21.5
s_fieldDelimiter, 2.21.6
torsion, 2.34.89.81
s_helpEngine, 2.21.7
return, 2.34.86
s_icmPrompt, 2.21.10
reverse complement, 2.35.138.2
lighting, 2.34.89.42
s_imageViewer, 2.21.11
normals, 2.34.89.42
s_inxDir, 2.21.9
reversing order, 2.35.66.2
s_javaCodeBase, 2.21.12
s_labelHeader, 2.21.13
matrix, 2.35.29
s_lib, 2.21.14
ribbon, 5.7.18
s_logDir, 2.21.15
bullets, 2.23.5.7
s_out, 2.21.16
s_pdbDir, 2.21.17
ribbonColorStyle, 2.22.21
s_pdbDirFtp, 2.21.18
ribbonStyle, 2.22.22
s_pdbDirWeb, 2.21.19
ride, 3.18
s_printCommand, 2.21.21
ridge, 3.13.1.23
s_projectDir, 2.21.20
right join, 2.34.50
s_prositeDat, 2.21.22
rigid chemical superposition, 2.34.97
s_psViewer, 2.21.23
ring, 2.35.130
s_reslib, 2.21.24
center coordinates, 2.35.192.2
s_skipMessages, 2.21.25
sampling, 3.17
s_sysCp, 2.21.26
templates, 2.34.89.8
s_sysLs, 2.21.27
rm, 2.34.22.9
s_sysMv, 2.21.28
rocking, 2.34.23.5
s_sysRm, 2.21.29
s_translateString, 2.21.31
of the fixed torsions, 2.35.137.2
s_userDir, 2.21.32
based on alignment, 2.35.137.14
s_usrlib, 2.21.33
bfactor, 2.35.137.7
s_webEntrezLink, 2.21.34
center of mass, 2.35.137.15
s_webViewer, 2.21.35
coordinates, 2.35.137.7
s_xpdbDir, 2.21.36
iarray, 2.35.137
sa23, 3.3
length, 2.35.137.13
sampling grid, 2.35.192.3
occupancy, 2.35.137.7
user field, 2.35.137.7
transformation in place, 2.34.102.1
chemical, 2.34.88.1
save preferences, 2.34.110.42
column table, 2.34.88.2
print, 3.2.6
lines, 2.34.84.1
sdf file, 2.34.110.11
tether partners, 2.35.137.12
saving graphics to album, 2.34.65.20
vw partners, 2.35.137.12
image, 2.34.110.36
selectMinGrad, 2.19.37
scaffold, 2.35.178
selectSphereRadius, 2.19.38
scaffolds, 2.34.55
selected stack conformations, 2.34.22.17
scanMakeHitlist, 3.13.1.17
selecting by b-factor, 2.35.137
scoring, 3.13.1.4
y z, 2.35.137
screen X, 2.35.190
columns, 5.9.1
coordinates, 2.35.190
from clusters, 3.14.6.4
neighboring elements, 2.35.101
file name, 2.35.55
residues, 3.3.6
inside ICM, 5.8.2
saving, 2.35.66.4
name, 5.8.2
image generation, 2.34.23.3
elements, 2.8.4
scripting molecular movements, 3.2.4
examples, 2.8.3
functions, 2.8.10
gap patching, 2.35.137, 2.35.137.11
to chem-table, 2.35.109
search for chemical pattern, 2.35.56.3
levels, 2.8.2
pdb headers, 3.4.5
simplification, 2.35.137.11
prosite, 3.4.1
transfer, 2.35.137, 2.35.156.8
sequence pattern, 2.34.35.8
type, 2.8
searchObjSegment, 2.37.73
types, 2.8.1
searchPatternDb, 2.37.71
variable, 2.24.12
searchPatternPdb, 2.37.72
atoms, 2.8.8
searchSeqDb, 2.37.74
functions, 2.8.10
searchSeqFullPdb, 2.37.76
molecules, 2.8.6
searchSeqPdb, 2.37.75
objects, 2.8.5
searchSeqProsite, 2.37.77
output, 2.24.15
searchSeqSwiss, 2.37.78
residues, 2.8.7
searches and alignments, 3.4
torsions, 2.8.9
second moments, 2.35.163
variables, 2.8.9
secondary structure derivation from 3D, 2.34.5.1
selections, 2.34.89.34
schematic, 2.23.5.42
in molecular objects, 2.8
segMinLength, 2.18.20
selftether, 2.23.14.12, 5.9.4
segment, 5.8.4
seq_ali_project, 2.35.156.6
select, 2.34.88
atoms by number of bonded atoms, 2.35.137.3
analysis intro, 1.4.3
chemical, 2.34.89.15
assembly, 2.34.43.2
color, 2.34.89.16
belongs to alignment, 2.35.70
comment, 2.34.89.17, 2.34.89.18
conservation, 2.35.136.8
sequence, 2.34.89.19
distance, 2.35.137
comp_matrix, 2.34.89.20
matrix from alignment, 2.35.90.9
current map, 2.34.89.45
dotplot, 1.4.3.2
object, 2.34.89.48
from alignment, 2.34.22.23
directory, 2.34.89.21
pdb, 2.34.65.35
drestraint, 2.34.89.22
type, 2.34.89.23
intro, 1.4.3
electrostatic radii, 2.34.89.79
modification, 2.35.180
error, 2.34.89.33
neighbor, 2.35.99.3
field, 2.34.89.34
parray, 5.7.3.2
alignment, 2.34.89.35
pattern, 5.7.4
map, 2.34.89.36
position correspondence, 2.35.160.3
name, 2.34.89.37
positional weights, 2.34.89.1
font, 2.34.89.38
redundancy removal, 2.34.43.2
grob, 2.34.89.39
search, 2.34.35.2
foreground, 2.34.89.40
selection, 2.34.22.23
format, 2.34.89.41
structure alignment, 2.36.1
grob, 2.34.89.42
to alignment transfer, 2.35.122.3
coordinates, 2.34.89.42
type, 5.8.3
label, 2.34.89.42
sequence-alignment mapping, 2.35.156.5, 2.35.156.6
group, 2.34.89.63
sequence-structure alignment, 2.35.5.1
column, 2.34.89.24
hydrogen, 2.34.89.25
sequenceBlock, 2.18.21
key, 2.34.89.43
sequenceColorScheme, 2.22.23
label, 2.34.89.44
sequenceLine, 2.18.22
3d label, 2.34.89.44.4
sequences, 3.4
chemical, 2.34.89.44.3
not in alignments, 2.34.22.23
distance, 2.34.89.44.1
set, 2.34.89
table, 2.34.89.44.2
alternative atom, 2.34.89.18
map, 2.34.89.45
area, 2.34.89.1
molcart, 2.34.89.46
atom, 2.34.89.3
molecular variables, 2.34.89.83
ball label, 2.34.89.2
name, 2.34.89.47
background image, 2.34.89.4
sequence, 2.34.89.47.1
bfactor, 2.34.89.5
object, 2.34.89.48
biological symmetry, 2.34.89.64
occupancy, 2.34.89.49
bond topology, 2.34.89.7
plane, 2.34.89.50
type, 2.34.89.6
pmf, 2.34.89.51
and formal charges, 2.34.89.7
cartesian, 2.34.89.8
alignment, 2.34.89.55
chain, 2.34.89.9
chemical view, 2.34.89.54
charge, 2.34.89.10
column, 2.34.89.53
formal, 2.34.89.11
radii graphical, 2.34.89.86
auto, 2.34.89.12
randomSeed, 2.34.89.56
mmff, 2.34.89.13
randomize, 2.34.89.56
chargemmff, 2.34.89.13
resolution, 2.34.89.57
chiral, 2.34.89.14
selftether, 2.34.89.68
site, 2.34.89.26
alignment, 2.34.89.27
functions, 2.34.40
residue, 2.34.89.29
intro, 1.7.1
slide, 2.34.89.30
progression, 2.34.78
sstructure backbone, 2.34.89.59
warning message, 2.35.191
sequence, 2.34.89.60
shineStyle, 2.22.24
to sequence, 2.34.89.60
shininess, 2.19.40
stack, 2.34.89.61
show, 2.34.90, 2.34.90.39
energy, 2.34.89.61, 2.34.94.1
alias, 2.34.90.7
stereo, 2.34.89.58
aliases, 2.34.90.7
swiss, 2.34.89.62
alignment, 2.34.90.8
name, 2.34.89.62
area, 2.34.90.9
symmetry, 2.34.89.65
atom, 2.34.90.10
bio, 2.34.89.64
type, 2.34.90.11
crystal, 2.34.89.63
atoms, 2.34.90.10
group, 2.34.89.63
bond, 2.34.90.12
to a torsion, 2.34.89.65
clash, 2.34.90.13
table, 2.34.89.66
color, 2.34.90.14
tautomer, 2.34.89.31
column, 2.34.90.15
terms, 2.34.89.67
comp_matrix, 2.34.90.16
tether, 2.34.89.69
database, 2.34.90.17
append, 2.34.89.70
drestraint, 2.34.90.18
texture, 2.34.89.32
type, 2.34.90.19
type, 2.34.89.71
energy, 2.34.90.20
mmff, 2.34.89.77
atom, 2.34.90.21
molecule, 2.34.89.75
gradient, 2.34.90.22
object, 2.34.89.74
hbond, 2.34.90.23
property, 2.34.89.73
exact, 2.34.90.24
sequence, 2.34.89.76
hbondexact, 2.34.90.24
surface, 2.34.89.72
html, 2.34.90.25
variable grid, 2.34.89.84
iarray, 2.34.90.26
variablegrid, 2.34.89.84
integer, 2.34.90.27
view, 2.34.89.80
key, 2.34.90.4
vrestraint, 2.34.89.81
label, 2.34.90.28
vrestraintvs_var, 2.34.89.82
library, 2.34.90.29
radii, 2.34.89.78
link, 2.34.90.30
vwelradii, 2.34.89.79
logical, 2.34.90.31
vwradii, 2.34.89.78
map, 2.34.90.5
window, 2.34.89.85
mol, 2.34.90.32
xstick, 2.34.89.86
mol2, 2.34.90.33
radii, 2.34.89.86
molecule, 2.34.90.34
setResLabel, 2.37.80
molecules, 2.34.90.6
setcomp_matrix, 2.34.89.20
object, 2.34.90.35
seticmff, 2.37.79
pdb, 2.34.90.36
setting conf properties, 2.34.89.61
pharmacophore type, 2.34.90.54
setvs_var, 2.34.89.83
pmf, 2.34.90.37
sf-term, 2.34.89.72
preferences, 2.34.90.38
sfWeight, 2.19.39
profile, 2.34.90.39
sh24, 3.4
residue, 2.34.90.40
shadows, 2.23.5.34
type, 2.34.90.41
segment, 2.34.90.42
selftether, 2.34.90.1
sln, 5.8.8
sequence, 2.34.90.43
slurm, 3.13.1.20
shell variable, 2.34.90.3
smallest set of smallest rings, 2.35.130
site, 2.34.90.2
smart, 2.23.14.7
stack, 2.34.90.44
smarts, 2.35.70.2
svariable, 2.34.90.3
table, 2.34.90.45
to chem-table element, 2.35.109
as database, 2.34.90.17
smooth alignment, 2.35.146.4
term, 2.34.90.46
interpolation, 2.34.94.3
tethers, 2.34.90.47
map, 2.35.146.5
uniprot, 2.34.90.48
rarray, 2.35.146.1
entry, 2.34.90.48
surface, 2.37.88
version, 2.34.90.49
soap, 2.32
volume, 2.34.90.52
soft trim, 2.35.178
map, 2.34.90.53
solid sphere, 2.23.5.11
volumemap, 2.34.90.53
solubility, 2.35.114
vrestraint, 2.34.90.50
type, 2.34.90.51
vrestraints, 2.34.90.50
solvent accessible area, 2.18.23
showcomp_matrix, 2.34.90.16
showing weak hydrogen bonds, 2.23.5.25
side chain, 2.37.90
array, 2.34.91.1
flexibility, 2.37.90
arrays, 2.34.91.1
sigma function, 2.35.44.8, 2.35.136.2
column, 2.34.91.3
level, 2.23.7.5
table, 2.34.91.3
signal recognition measure, 2.37.21
molecules, 2.34.91.5
similar chains, 2.35.137.13
object, 2.34.91.4
similarity, 2.34.35.10, 2.34.35.11
stack, 2.34.91.6
simple expressions, 2.10.1.1
table, 2.34.91.2
string substitution, 2.35.126.2
sortSeqByLength, 2.37.81
simplified representation, 2.23.5.16
space, 2.34.35.9
compound, 2.35.179
group, 2.34.69
mesh structure, 2.34.15.2
transformations, 2.35.176
simulation duration, 2.19.47
sparse atoms, 2.23.14.3
temperature, 2.19.46
spawn background job, 2.34.65.1
intro, 1.4.2
special values, 2.35.168
sinking number, 2.19.35
specificity, 2.35.136.5
spectral decomposition, 2.35.45
arrows, 2.34.89.26
split, 2.34.92
table, 5.8.6.1
column values, 2.34.92.5
sites, 2.34.22.26
grob, 2.34.92.1
by residue selection, 2.34.22.24
group, 2.34.92.2
sequences, 5.8.6.1
array, 2.34.92.3
sixthe power, 2.22.6
into chains, 2.34.92.6
molsar, 2.34.65.28
intro, 1.4.1.2
object, 2.34.92.6
to molecules, 2.34.92.6
transition time, 2.34.23.21
sequence, 2.34.92.4
slides, 2.35.190
table cell, 2.34.92.5
splitting selection, 2.8.11
spreadsheet, 2.34.84.44
optimization, 2.34.35.1
sprintf, 2.34.93
superposition, 2.34.3.5
analysis, 3.3
sqlite, 3.5.1
comparison, 2.35.23.2
sqrt, 2.35.37
factors, 3.11.1
square matrix to element pairs, 2.35.160.5
structure, 3.11.1
ssThreshold, 2.19.41
sub-alignment to selection, 2.35.128
ssWeight, 2.19.42
sub-matrix, 2.35.90.2
ssbond, 5.4.5
submap, 2.35.86
ssearchStep, 2.19.43
subroutine, 2.34.64
ssign sstructure segment, 2.34.5.2
subset, 2.6
stack, 2.18.12, 2.18.13, 2.18.15, 2.22.7, 2.34.89.61, 2.34.94, 2.34.94.1, 2.35.66.6, 2.35.160.6, 5.3.12, 5.8.9
bin size, 2.34.14
cleaning, 2.34.22.17
search, 2.34.35.4
extension, 2.34.4.2
grid engine, 3.13.1.20
multiplication, 2.34.4.2
merge, 3.7.7
faq, 3.3.1
standard chemical form, 2.34.70.4
how to, 3.3.1
deviation, 2.35.133
minimize, 2.34.98
standardization, 2.34.22.11
support, 1.3
chemical, 2.34.70
suppressing view changes, 2.34.23.21
startup, 3.1.2.3
static RMSD, 2.35.155
accessibility, 2.34.90.9
and dynamic hbonds, 2.23.5.24
statistical thermodynamics, 2.35.47
charge, 5.7.13
color, 2.34.89.16
reconstruction, 3.8.9
dot density, 2.23.5.55
stereo-specific hydrogens, 2.34.22.11
energy, 2.22.25, 2.34.89.72
stereoisomer, 2.34.30
mesh, 2.35.192.3
stereoisomers, 2.20.16
point selection, 2.35.192
stick, 5.8.10
term, 2.19.39
store, 2.34.94
surfaceAccuracy, 2.18.23
surfaceMethod, 2.22.25
frame, 2.34.94.3
surfaceTension, 2.19.44
image, 2.34.65.20
svariable, 5.8.12
stack object, 2.34.94.2
svg, 2.34.110.22
torsion type, 2.34.94
export, 2.23.9.14
strength of hydrogen bond, 2.34.23.14
map, 2.35.160.7
string, 5.8.11
swapping protein fragments, 3.8.7
swiss, 2.34.89.62
filtering, 2.35.178
swissFields, 2.24.10
inversion, 2.35.156.1
swissprot, 2.34.89.26
label, 2.34.23.12
symmetrization of a matrix, 2.35.90.3
symmetry, 2.35.176
variables, 2.21
faq, 3.10
strings, 2.21
group, 2.18.2
strip, 2.34.96
problem, 2.34.69
struct, 2.35.99.2
syntax highlighting, 5.8.2
system, 5.10.2
then, 2.34.101
command, 2.34.99
thickness, 2.23.9.14
copy, 2.21.26
thread to template, 2.34.66.4
file move, 2.21.28
threading, 2.35.5.1
list file, 2.21.27
remove, 2.21.29
thumbnails, 2.35.68
tif, 5.9.6
actions, 5.9.2.4
time, 2.35.38, 2.35.156.2
column, 2.35.99
timeLimit, 2.19.47
format, 2.34.89.41
tolFunc, 2.19.49
plot, 2.34.65.32
tolGrad, 2.19.48
transformations, 2.35.104
topological psa, 5.7.12
creation, 2.34.43.3
torScan, 2.37.84
display style, 5.9.1
torsion, 2.35.136.3
expression, 5.9.2
rmsd comparison, 2.34.14.2
from matrix, 2.35.160.4
scan, 2.37.84
grid view, 5.9.1
torsions, 2.35.102.3
of atoms and distances, 2.35.160.10
score, 2.36.2
operations, 5.9.2.1
tpsa, 5.7.12
plot, 5.9.2.3
principal component analysis, 2.34.65.29
file, 2.38.17
print, 2.34.90.45
frame writing, 2.34.23.17
row, 2.34.72.4
smoothing, 2.34.23.17
label mark, 2.34.89.44.2
transform, 2.34.102, 2.34.102.2
mark, 2.35.79
general, 2.34.102
selected row numbers, 2.35.70
grob coordinates, 2.34.102.2
subset, 5.9.2.2
molecules, 2.34.102.2
show html, 2.34.108.1
sarray, 2.34.102.1
targa, 5.9.3
target coordinates, 5.9.4
vector, 5.9.7
tautomer, 2.34.31
and symmetry, 3.10
tempCycle, 2.19.46
transforming points, 2.35.192.5
tempLocal, 2.19.45
temperature, 2.19.46
transparency, 2.34.89.42, 5.5.3
variations in optimizer, 2.19.46
background, 2.34.110.36
template docking, 3.13.1.19
grob, 2.34.23.11
tensor product of two vectors, 2.35.90
grobs, 2.23.5.57
terminal font, 2.38.14
tree, 2.34.65.37, 2.35.99.5
window, 2.34.44
cluster, 2.13
terms, 2.17
delete, 2.34.22.36
hydrogen bonding, 2.19.21
label format, 2.35.99.5
test, 2.34.100
representatives, 2.13.1
binary, 2.34.100.1
trim string array, 2.34.102.1
testing if argument exists, 2.35.59
trimming grid map values, 2.35.178
true positives, 2.35.136.5
text, 2.35.89
truncate alignment, 2.34.65.34
search in tables, 2.35.56.2
values, 2.35.178
to script, 5.8.2
texture, 5.5.3
tsShapeData, 2.23.14.12
tga, 5.9.3
table format, 2.34.84.44
dimensional plot, 2.35.146.2
vdW gap, 2.35.151
set comparison, 2.35.44.8, 2.35.136.2
vector, 2.35.102.6
sets, 2.35.70.10
dot product, 2.35.187.1
txdoc browser, 2.34.84.4
length, 2.35.103
type, 2.35.182.1
product, 2.35.187.1
tzMethod, 2.22.26
transformation, 2.35.104
tzWeight, 2.19.50
vertex, 2.34.13.4.2
ultra large libraries, 3.13.1.25
connectivity, 2.35.90.13
uncharge functional groups, 2.34.70.2
vertexes, 2.34.13.4.2
unclip, 2.34.23.2
vertical alignment block, 2.34.65.34
underline, 2.34.89.38.1
workspace, 2.23.8.6
undisplay, 2.34.104
vertices, 2.34.13.4.2
graphics, 2.34.105
vicinity, 2.19.51
window, 2.34.105
video, 2.34.110.31
unfix, 2.34.106
union, 2.35.70.10
point, 2.35.190
restoration, 2.35.73
atomic order, 2.34.65.39
transition, 2.34.89.80
column values, 2.34.43.4
views, 5.8.14
names, 2.35.99
virtual, 5.10.3
new object name, 2.35.99
arrays, 2.34.1.1.1
smiles, 2.34.65.39
chemistry, 2.34.70, 2.35.102.4
field, 2.34.7.2
grep, 2.34.84.1
unlink alignments, 2.34.22.21
intro, 1.4.2.7
sequences, 2.34.22.21
screening, 3.18
variables, 2.34.22.21
visitsAction, 2.22.28
update database, 2.34.70.5
speadsheet, 2.34.1.1.1
cluster, 3.13.1.15
updates, 1.1
intro, 1.4.2.7
updating atom pairs, 2.20.27
job queueing, 3.13.1.15
upper case, 2.35.171
overview, 3.13.1
url string parsing, 2.35.160
parallelization, 3.13.1.14
user atom display, 2.23.5.3
results, 3.13.1.17
commands, 2.34.84.3
scores storage, 3.13.1.16
defaults, 2.34.110.42
threshold, 3.13.1.11
environment, 3.1.2.2
vls_intro, 3.13.1.10
menu, 2.23.10.1
volume, 5.10.4
menus, 2.33
vrestraint, 5.10.5
user-defined properties, 2.34.89.34
file, 2.38.23
solvation parameters, 2.35.7
type, 5.10.6
user_startup, 3.1.2.4
file, 2.38.22
icm, 3.1.2
vs_, 2.8.9
guide, 3
vs_out, 2.24.15
v-synthes, 3.13.1.25
vwCutoff, 2.19.52
v_, 2.8.1
vwExpand, 2.19.53
van der Waals surface, 2.23.5.56
vwExpandDisplay, 2.19.54
varLabelStyle, 2.22.27
vwMethod, 2.22.29
variable restraint, 2.34.89.81
vwSoftMaxEnergy, 2.19.55
selection, 2.8.9
wait, 2.34.107
message, 2.35.191
movie, 2.34.110.31
suppression, 2.20.28
object, 2.34.110.32
water.dielectric constant, 2.19.15
parray, 2.34.110.34
waterRadius, 2.19.56
simple, 2.34.110.33
wavefront format, 2.34.65.11
pdb, 2.23.14.14, 2.34.110.35
png, 2.34.110.36
table, 2.34.108.1
postscript, 2.34.110.37
webEntrezOption, 2.22.30
pov, 2.34.110.38
weighted rmsd, 2.23.14
povray, 2.34.110.38
while, 2.34.109
project, 2.34.110.2
whole string, 2.35.126.1
rarray, 2.34.110.4
window averaging, 2.35.146.1
sarray, 2.34.110.5
layout, 2.35.156.9
sequence, 2.34.110.39
width and height, 2.35.190
session, 2.34.110.40
windowSize, 2.18.24
several array, 2.34.110.8
movie, 2.34.110.31
simple object, 2.34.110.33
wire, 5.10.7
stack, 2.34.110.41
wireBondSeparation, 2.19.57
system preference, 2.34.110.42
wireStyle, 2.22.31
table, 2.34.110.10
workspace, 2.34.105
mol, 2.34.110.11
write, 2.34.110
with links, 2.34.110.19
album, 2.34.110.21
tether, 2.34.110.9
alignment, 2.34.110.1
tethers, 2.34.110.9
array, 2.34.110.8
trajectory, 2.34.23.17
table, 2.34.110.8
vs_var, 2.34.110.43
binary, 2.34.110.2
writevs_var, 2.34.110.43
blast, 2.34.110.25
x-ray crystallography, 2.34.90.21
column, 2.34.110.12
xlsx, 2.34.84.44, 2.34.110.10
database, 2.34.110.13
drestraint, 2.34.110.14
drugbank example, 2.12
type, 2.34.110.15
xpdb, 2.34.84.2
factor, 2.34.110.16
xplor format, 2.34.84.27
gamess, 2.34.110.17
xrMethod, 2.22.32
grob, 2.34.110.18
xrWeight, 2.19.58
html, 2.34.110.19
xray density to rectangular energy map, 2.34.65.31
iarray, 2.34.110.3
xstick, 5.10.8
image, 2.34.110.20
radii, 2.34.89.2
alignment, 2.34.110.23
xyz morphing, 3.8.8
chemical, 2.34.110.22
zega, 5.10.9
parray, 2.34.110.21
intro, 1.4.3.6
index, 2.34.84.24, 2.34.110.24
|, 2.14.3
blast, 2.34.110.25
fasta, 2.34.110.24
library, 2.34.110.26
map, 2.34.110.27
matrix, 2.34.110.6
model, 2.34.110.28
mol, 2.34.110.29
mol2, 2.34.110.30
molcart, 2.34.110.7