ICM User's Guide: The 3D Fully Interactive Ligand Editor

ICM GUI Manual

ICM Manual v.3.9

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Introduction
Help Videos
Reference Guide
Getting Started
Protein Structure
Molecular Graphics
Slides & ActiveICM
Sequences & Alignments
Protein Modeling
Cheminformatics
Learn and Predict
Docking
Virtual Screening
Molecular Dynamics
MolScreen
3D Ligand Editor
Tables and Plots
Local Databases
ICM-Scarab
KNIME
Tutorials
FAQs

Index

16 The 3D Fully Interactive Ligand Editor

16.1 Setup Ligand and Receptor
16.2 Ligand-Editor-Preferences
16.3 Display Options
16.4 Evaluate Ligand Score and Strain
16.5 Edit Ligand
16.6 Virtual Screen: Find Best Replacement Group
16.7 Multiple Position Group Scan
16.8 Bioisostere Scan
16.9 Dock or Minimize Ligand
16.10 Dock from Table
16.11 Fragment Linking Core Replacement
16.12 Impose Tethers or Distance Restraints
16.13 Defined Flexible Receptor Groups
16.14 Side Chain Refinement
16.15 Multiple Receptor Docking
16.16 Covalent Docking in the Ligand Editor
16.17 Dock to Atomic Property Fields
16.18 AI Decoration (groupGen)
16.19 How to Save Ligand Receptor Complex as PDB
16.20 Peptide Modeling
16.21 Export Docking Project.
16.22 Close and Clean Up Project

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