ICM Manual v.3.8
by Ruben Abagyan,Eugene Raush and Max Totrov
Copyright © 2019, Molsoft LLC
Jun 9 2022
|
Index
| &, 2.14.3 | Bracket, 2.34.22 |
| 2D labels, 2.33.56.1 | C, 5.3 |
| to 3D, 3.16 | CCP4, 5.6.6 |
| trees, 2.33.63.38 | CGI, 2.11 |
| smooth, 2.34.146.2 | COLOR.bg, 2.19.9 |
| 3D chemical builder, 1.4.2.8 | distanceAtom, 2.19.10 |
| font size, 2.33.23.12 | label, 2.19.11 |
| label, 2.33.23.12, 2.33.87.39 | CONSENSUS, 2.23.1 |
| labels, 2.33.56.1 | CONSENSUSCOLOR, 2.23.2 |
| mol file, 2.36.86 | CONSENSUS_strength, 2.19.12 |
| plots intro, 1.4.3.7 | Cad, 2.34.23, 2.34.23.1, 2.34.23.2 |
| smoothing, 2.34.146.3 | Cad1, 2.34.23.1 |
| superposition, 2.36.22 | Cadalign, 2.34.23.2 |
| transformations, 2.33.100.2 | Ceil, 2.34.24 |
| tree, 2.33.63.38 | Cell, 2.34.25 |
| chemical similarity, 2.34.136 | Charge, 2.34.26 |
| pharmacophore comparison, 2.34.136.3 | Chemical, 2.34.27 |
| 3dxml, 5.5.3 | Functions, 2.27 |
| =, 2.14.1 | Synthetic Accessibility, 2.30 |
| A, 5.1 | Cluster, 2.34.28 |
| ANN, 2.33.52 | Collada, 5.5.3 |
| APF distance, 2.34.136 | Collection, 2.34.28.1 |
| Abs, 2.34.1 | Color, 2.34.29 |
| Acc, 2.34.2 | from gradient, 2.34.29.1 |
| Acos, 2.34.3 | image, 2.34.29.2 |
| Acosh, 2.34.4 | protein, 2.34.29.3 |
| Adobe, 2.21.23 | Compare, 2.34.30 |
| Align, 2.34.5 | Connolly surface, 5.8.7 |
| sequence, 2.34.5.1 | Consensus, 2.34.31 |
| AlignSS, 2.35.1 | Contour, 2.34.32 |
| Angle, 2.34.6 | Corr, 2.34.33 |
| Apple, 3.14.6.2 | Cos, 2.34.34 |
| Area, 2.34.7 | Cosh, 2.34.35 |
| residue contacts, 2.34.7.1 | Count, 2.34.36 |
| Asin, 2.34.8 | CubicRoot, 2.34.37 |
| Asinh, 2.34.9 | D, 5.4 |
| Ask, 2.34.10 | DAE, 5.5.3 |
| Askg, 2.34.11 | DE, 2.33.35.2 |
| Atan, 2.34.12 | DNA Representation, 1.4.1.3 |
| Atan2, 2.34.13 | alignment, 2.33.3.4 |
| Atanh, 2.34.14 | melting temperature, 2.34.164 |
| Atom, 2.34.15 | views, 1.4.1.3 |
| Augment, 2.34.16 | Date, 2.34.38 |
| Axis, 2.34.17 | Deletion, 2.34.39 |
| B, 5.2 | Descriptor, 2.34.40, 2.34.41 |
| BPMC, 5.2.6 | numeric, 2.34.40 |
| Bfactor, 2.34.19 | Det, 2.34.42 |
| Blob, 2.34.18 | Disgeo, 2.34.43 |
| Boltzmann, 2.34.20 | Distance, 2.34.44, 2.34.44.6 |
| Box, 2.34.21 | 2 alignments, 2.34.44.13 |
| Dayhoff, 2.34.44.11 | Formula, 2.34.58 |
| Tanimoto, 2.34.44.7 | GRAPHICS, 2.23.5 |
| alignment, 2.34.44.12 | alignmentRainbow, 2.23.5.1 |
| as_, 2.34.44.3 | atomLabelShift, 2.23.5.2 |
| rarray, 2.34.44.4 | atomValueCircles, 2.23.5.3 |
| atoms, 2.34.44.3 | ballRadius, 2.23.5.4, 2.23.5.31 |
| chemical, 2.34.44.7, 2.34.44.15 | ballStickRatio, 2.23.5.5 |
| chemset, 2.34.44.8 | chainBreakLabelDisplay, 2.23.5.8 |
| dayhoff, 2.34.44.11 | chainBreakStyle, 2.23.5.7 |
| hierarchical, 2.34.44.6 | clashWidth, 2.23.5.6 |
| iarray, 2.34.44.1 | clipStatic, 2.23.5.10 |
| alignment, 2.34.44.12 | clippingPlane, 2.23.5.9 |
| matrix, 2.34.44.5, 2.34.44.9 | cpkClipCaps, 2.23.5.11 |
| multiple atomic, 2.34.44.4 | displayLineLabels, 2.23.5.12 |
| rarray, 2.34.44.2 | displayMapBox, 2.23.5.13 |
| tether, 2.34.44.10 | dnaBallRadius, 2.23.5.14 |
| tree, 2.34.44.14 | dnaRibbonRatio, 2.23.5.15 |
| cluster, 2.34.44.14 | dnaRibbonStyle, 2.23.5.16 |
| H, 5.5 | dnaRibbonWidth, 2.23.5.17 |
| number, 2.34.44.6 | dnaRibbonWorm, 2.23.5.18 |
| EDS server, 2.36.42 | dnaStickRadius, 2.23.5.19 |
| EST-alignment, 2.33.3.4 | formalChargeDisplay, 2.23.5.20 |
| Eigen, 2.34.45 | grobDotSize, 2.23.5.21 |
| Energy, 2.34.46 | grobLineWidth, 2.23.5.22 |
| Entropy, 2.34.47 | hbondAngleSharpness, 2.23.5.26 |
| Error, 2.34.48 | hbondBallPeriod, 2.23.5.27 |
| soap, 2.34.49 | hbondBallStyle, 2.23.5.28 |
| Exist, 2.34.50 | hbondMinStrength, 2.23.5.25 |
| molcart, 2.34.50.1 | hbondRebuild, 2.23.5.24 |
| Existenv, 2.34.51 | hbondStyle, 2.23.5.23 |
| Exp, 2.34.53 | hbondWidth, 2.23.5.29 |
| Extension, 2.34.52 | hetatmZoom, 2.23.5.31 |
| FILTER, 2.23.3 | hydrogenDisplay, 2.23.5.32 |
| Z, 2.23.3.1 | light, 2.23.5.33 |
| gz, 2.23.3.2 | lightPosition, 2.23.5.34 |
| uue, 2.23.3.3 | mapLineWidth, 2.23.5.35 |
| FTP, 2.23.4 | occupancyDisplay, 2.23.5.36 |
| createFile, 2.23.4.1 | occupancyRadiusRatio, 2.23.5.37 |
| keepFile, 2.23.4.2 | quality, 2.23.5.38, 2.34.91.1 |
| proxy, 2.23.4.3 | rainbowBarStyle, 2.23.5.39 |
| Field, 2.34.54, 2.34.54.1 | resLabelDrag, 2.23.5.40 |
| user, 2.34.54.1 | resLabelYShift, 2.23.5.41 |
| File, 2.34.55 | ribbonCylinderRadius, 2.23.5.42 |
| Find, 2.34.56 | ribbonGapDistance, 2.23.5.43 |
| chemical, 2.34.56.3 | ribbonRatio, 2.23.5.44 |
| pattern, 2.34.56.3 | ribbonWidth, 2.23.5.45 |
| in array, 2.34.56.1 | ribbonWorm, 2.23.5.46 |
| table, 2.34.56.2 | rocking, 2.23.5.47 |
| FlexLM license info, 2.34.188 | rockingRange, 2.23.5.48 |
| Floor, 2.34.57 | rockingSpeed, 2.23.5.49 |
| selectionStyle, 2.23.5.51 | ICM-shell, 3.1, 5.8.5 |
| sketchAccents, 2.23.5.30 | intro, 1.7.1 |
| stereoMode, 2.23.5.52 | script, 2.33.8 |
| stickRadius, 2.23.5.31, 2.23.5.53 | ICMFF force field, 2.36.79 |
| surfaceDotDensity, 2.23.5.55 | ICMHOME, 3.1.2.1 |
| surfaceDotSize, 2.23.5.54 | shell variable, 3.1.2.1 |
| surfaceProbeRadius, 2.23.5.56 | IMAGE, 2.23.9 |
| transparency, 2.23.5.57 | bondLength2D, 2.23.9.15 |
| wormRadius, 2.23.5.58 | color, 2.23.9.8 |
| GRID, 2.23.6 | compress, 2.23.9.9 |
| gcghExteriorPenalty, 2.23.6.1 | gammaCorrection, 2.23.9.7 |
| gpGaussianRadius, 2.23.6.6 | generateAlpha, 2.23.9.10 |
| margin, 2.23.6.2 | lineWidth, 2.23.9.3 |
| maxEl, 2.23.6.3 | lineWidth2D, 2.23.9.14 |
| maxVw, 2.23.6.5 | orientation, 2.23.9.16 |
| minEl, 2.23.6.4 | paperSize, 2.23.9.17 |
| GROB, 2.23.7 | previewResolution, 2.23.9.13 |
| arrowRadius, 2.23.7.3 | previewer, 2.23.9.12 |
| atomSphereRadius, 2.23.7.1 | printerDPI, 2.23.9.2 |
| contourSigmaIncrement, 2.23.7.5 | quality, 2.23.9.1 |
| relArrowHead, 2.23.7.4 | rgb2bw, 2.23.9.18 |
| relArrowSize, 2.23.7.2 | scale, 2.23.9.4 |
| GUI, 2.23.8 | stereoAngle, 2.23.9.6 |
| defaults, 3.14.6.2 | stereoBase, 2.23.9.5 |
| dialog, 2.32 | stereoText, 2.23.9.11 |
| plot, 2.33.63.32 | writeScale, 2.23.9.19 |
| preferences, 2.33.83.4 | I_out, 2.24.4 |
| tableRowMarkColors, 2.23.8.5 | Iarray, 2.34.66, 2.34.66.4, 2.34.66.5 |
| windowLayout, 2.23.8.6 | atom numbers, 2.34.66.4 |
| workspaceFolderStyle, 2.23.8.9 | bits to integers, 2.34.66.3 |
| workspaceStyle, 2.23.8.7 | inverse, 2.34.66.2 |
| workspaceTabStyle, 2.23.8.8 | residue numbers, 2.34.66.5 |
| GaussFit, 2.34.82 | reverse, 2.34.66.2 |
| Getarg, 2.34.59 | stack, 2.34.66.6 |
| Getenv, 2.34.60 | Icm Options, 2.1 |
| Gradient, 2.34.61 | IcmSequence, 2.34.67 |
| Graphics, 1.4.1 | Image, 2.34.68 |
| Grob, 2.34.62 | collection, 3.9.2.1 |
| Group, 2.34.63 | frame by frame, 3.9.2.2 |
| HTTP.ignoreProxyDomains, 2.23.4.5 | InChI, 2.34.69 |
| proxy, 2.23.4.4 | InChi, 2.34.69 |
| Hartree-Fock, 2.33.82.21, 2.33.108.17 | InList, 2.34.105 |
| Header, 2.34.64 | Index, 2.34.70 |
| Histogram, 2.34.65 | chemical, 2.34.70.2 |
| N, 5.6 | compare, 2.34.70.10 |
| ICM desktop, 2.23.8.6 | element in array, 2.34.70.8 |
| documents, 2.33.82.4 | fork, 2.34.70.1 |
| modules, 1.4.4 | regexp, 2.34.70.4 |
| object, 2.36.13 | string, 2.34.70.3 |
| residue library, 2.21.24 | table label, 2.34.70.6 |
| tree, 2.34.70.9 | Median, 2.34.93 |
| unique elements, 2.34.70.7 | Method, 2.22.13 |
| Indexx, 2.34.71 | Min, 2.34.95 |
| Info, 2.34.73 | Mod, 2.34.97 |
| image, 2.34.74 | Mol, 2.34.98 |
| model, 2.34.75 | MolLogP, 2.28 |
| Insertion, 2.34.72 | MolLogS, 2.29 |
| Integer, 2.34.76 | MolPSA, 5.7.12 |
| Integral, 2.34.77 | MolSynth, 2.30 |
| Interrupt, 2.34.78 | Moment, 2.34.88 |
| Introduction, 1 | of Inertia, 2.34.88 |
| JSON, 2.33.82.57 | Money, 2.34.96 |
| LIBRARY, 2.23.10 | N-terminus, 2.23.14.4 |
| men, 2.23.10.1 | NMR, 2.33.61.1 |
| res, 2.23.10.2 | NOE averaging, 2.22.6 |
| Label, 2.34.79 | Name, 2.34.99 |
| Laplacian, 2.34.80 | chemical, 2.34.99.6 |
| Latent, 2.34.187.3 | property, 2.34.99.1 |
| LatentVector, 2.34.187.3 | close sequence, 2.34.99.3 |
| Length, 2.34.81 | conf, 2.34.99.7 |
| LinearFit, 2.34.83 | image, 2.34.99.11 |
| LinearModel, 2.34.84 | molcart, 2.34.99.12 |
| Log, 2.34.85 | object parray, 2.34.99.10 |
| LogP, 2.28, 2.34.114 | sequence, 2.34.99.8 |
| LogS, 2.29, 2.34.114 | soap, 2.34.99.2 |
| M_out, 2.24.5 | string, 2.34.99.4 |
| Mac, 3.14.6.2 | tree, 2.34.99.5 |
| Map, 2.34.86 | Namex, 2.34.100 |
| Markush structures, 2.33.53 | image, 2.34.100.2 |
| Mass, 2.34.87 | sequence, 2.34.100.1 |
| Match, 2.34.89 | Newick tree format, 2.34.156.4 |
| Mathews, 2.34.136.4 | Next, 2.34.101, 2.34.101.1 |
| Matrix, 2.34.90 | covalent neighbors, 2.34.101.1 |
| alignment, 2.34.90.9 | Nof, 2.34.102 |
| boundary, 2.34.90.10 | chemical, 2.34.102.2 |
| color, 2.34.90.4 | distance, 2.34.102.3 |
| grob connectivity, 2.34.90.13 | latent, 2.34.102.6 |
| histogram, 2.34.90.12 | library, 2.34.102.4 |
| new, 2.34.90.1 | molcart, 2.34.102.5 |
| residue areas, 2.34.90.8 | soap, 2.34.102.7 |
| comparison, 2.34.90.5 | tree, 2.34.102.1 |
| stack, 2.34.90.11 | Norm, 2.34.103 |
| sub, 2.34.90.2 | Normalize, 2.34.104 |
| symmetric, 2.34.90.3 | NotInList, 2.34.105 |
| table, 2.34.90.6 | R, 5.7 |
| tensor, 2.34.90.7 | OBJECT, 2.23.11 |
| Max, 2.34.91 | Obj, 2.34.106 |
| image graphic, 2.34.91.1 | Occupancy, 2.34.107 |
| MaxHKL, 2.34.92 | PBS, 3.13.3.6 |
| Mean, 2.34.94 | PLOT, 2.23.12 |
| box, 2.23.12.1 | Real, 2.34.123 |
| color, 2.23.12.2 | Reference, 2.34.125 |
| font, 2.23.12.3 | Guide, 2 |
| fontSize, 2.23.12.4 | Remainder, 2.34.124 |
| gridLineWidth, 2.23.12.5 | Replace, 2.34.126 |
| labelFont, 2.23.12.13 | chemical, 2.34.126.4 |
| lineWidth, 2.23.12.6 | exact, 2.34.126.1 |
| logo, 2.23.12.10 | regexp, 2.34.126.3 |
| markSize, 2.23.12.7 | simple, 2.34.126.2 |
| numberOffset, 2.23.12.8 | Res, 2.34.127, 2.34.128 |
| orientation, 2.23.12.11 | Resali, 2.34.128 |
| rainbowStyle, 2.23.12.14 | Resolution, 2.34.129 |
| seriesLabels, 2.23.12.12 | Rfactor, 2.34.131 |
| PLS, 2.34.102.6 | Rfree, 2.34.132 |
| error, 2.34.136.4 | Ring, 2.34.130 |
| models, 2.34.136.4 | Rmsd, 2.34.133 |
| Parray, 2.34.109 | of subset, 2.23.14 |
| Parray-object, 2.34.109 | Rot, 2.34.134 |
| Path, 2.34.108 | S, 5.8 |
| Pattern, 2.34.110 | SAR analysis, 2.33.63.27, 2.33.63.28, 2.33.90.2, 2.33.90.3 |
| Pi, 2.34.111 | SC, 2.33.35.2 |
| Polar Surface Area, 5.7.12 | SEQUENCE.restoreOrigNames, 2.23.12.15 |
| Potential, 2.34.112 | SITE, 2.23.13 |
| Power, 2.34.113 | defSelect, 2.23.13.2 |
| Predict, 2.34.114 | labelOffset, 2.23.13.3 |
| Probability, 2.34.115 | labelStyle, 2.23.13.4 |
| Profile, 2.34.116 | labelWrap, 2.23.13.5 |
| Property, 2.34.117 | showSeqSkip, 2.23.13.6 |
| Protonation state, 2.34.160.11 | wrapComment, 2.23.13.7 |
| Putarg, 2.34.118 | SLN notation, 2.34.156.10 |
| Putenv, 2.34.119 | SMARTS, 2.26, 2.33.10, 2.34.102.2 |
| QSAR, 2.33.52 | SOAP, 2.34.99.2, 2.34.102.7, 2.34.182.1 |
| R-groups, 2.33.53 | request message, 2.34.152 |
| REBEL, 3.7.2 | SSSR, 2.34.130 |
| faq, 3.7.2 | S_out, 2.24.8 |
| file, 2.33.53 | S_proteinTags, 2.24.9 |
| RNA topology, 2.23.5.16 | Sarray, 2.34.135 |
| R_2out, 2.24.7 | index, 2.34.135.1 |
| R_out, 2.24.6 | Score, 2.34.136 |
| Radius, 2.34.120 | alignment, 2.34.136.8 |
| Random, 2.34.121 | apf, 2.34.136.3 |
| string, 2.34.121.1 | chemset, 2.34.136.2 |
| Rarray, 2.34.122 | conservation, 2.34.136.7 |
| reverse, 2.34.122.2 | model, 2.34.136.4 |
| sequence projection, 2.34.122.1 | overlap, 2.34.136.1 |
| alignment projection, 2.34.122.3 | predictions, 2.34.136.5 |
| strength, 2.34.122.5 | sequence, 2.34.136.6 |
| property assignment, 2.34.122.4 | Scripting Tutorials, 1.8 |
| RarrayAlignment, 2.34.122.5 | Select, 2.34.137 |
| Rarrayinverse, 2.34.122.2 | break, 2.34.137.1 |
| atom property, 2.34.137.7 | Sum, 2.34.158 |
| nmembers, 2.34.137.4 | chemical, 2.34.158.1 |
| string, 2.34.137.9 | image, 2.34.158.2 |
| expand, 2.34.137.6 | Swissprot, 2.33.108.24 |
| fix, 2.34.137.2 | Symgroup, 2.34.159 |
| graphical, 2.34.137.5 | T, 5.9 |
| neighbors, 2.34.137.3 | TOOLS, 2.23.14 |
| Select_by atom numbers, 2.34.137.10 | edsDir, 2.23.14.1 |
| Select_by_sequence, 2.34.137.13 | membrane, 2.23.14.2 |
| Select_by_text, 2.34.137.9 | minSphereCubeSize, 2.23.14.3 |
| Select_lists, 2.34.137.12 | pdbChargeNterm, 2.23.14.4 |
| Select_patching, 2.34.137.11 | pdbReadNmrModels, 2.23.14.5 |
| Select_projection, 2.34.137.8 | rebelPatchSize, 2.18.5, 2.23.14.6 |
| Sequence, 2.34.138 | smilesXyzSeparator, 2.23.14.7 |
| array, 2.34.138.2 | superimposeMaxDeviation, 2.23.14.10 |
| Sequence(dna reverse), 2.34.138.1 | superimposeMaxIterations, 2.23.14.8 |
| Shannon, 2.34.47 | superimposeMinAtomFraction, 2.23.14.9 |
| Shuffle, 2.34.139 | tsShape, 2.23.14.12 |
| Sign, 2.34.140 | tsWeight, 2.23.14.13 |
| Simulations, 1.4.2 | writePdbRenameRes, 2.23.14.14 |
| Sin, 2.34.141 | Table, 2.34.160 |
| Sinh, 2.34.142 | alignment numbers, 2.34.160.3 |
| Site, 2.34.143 | distance, 2.34.160.10 |
| Slide, 2.34.144 | matrix, 2.34.160.4 |
| Smiles, 2.34.145 | model, 2.34.160.8 |
| Smooth, 2.18.24, 2.34.146, 2.34.146.1, 2.34.146.3 | chem, 2.34.160.9 |
| matrix, 2.34.146.2 | pairs, 2.34.160.5 |
| Smoothrs, 2.34.146.3 | plot, 2.34.160.7 |
| SoapMessage, 2.34.152 | stack, 2.34.160.6 |
| SolveQuadratic, 2.34.147 | url_decoder, 2.34.160.1 |
| SolveQubic, 2.34.148 | Table(alignment), 2.34.160.2 |
| Sort, 2.34.153 | Table(stack), 2.34.160.6 |
| Sphere, 2.23.14.3, 2.34.151 | Tan, 2.34.161 |
| Split, 2.34.154 | Tanh, 2.34.162 |
| chemical, 2.34.154.4 | Tanimoto, 2.34.66.3 |
| multisep, 2.34.154.3 | distance, 2.33.63.37 |
| regexp, 2.34.154.2 | matrix, 2.34.44.7 |
| tree, 2.34.154.1 | Temperature, 2.34.164 |
| Sql, 2.34.149 | Tensor, 2.34.163 |
| Sqrt, 2.34.150 | Time, 2.34.165 |
| Srmsd, 2.34.155 | Tointeger, 2.34.166 |
| Sstructure, 2.34.157 | Tolower, 2.34.167 |
| String, 2.34.156, 2.34.156.8 | Toreal, 2.34.168 |
| alternative, 2.34.156.7 | Torsion, 2.34.169 |
| date, 2.34.156.2 | Tostring, 2.34.170 |
| mol, 2.34.156.3 | Toupper, 2.34.171 |
| selection, 2.34.156.8 | ToxScore, 2.35.2 |
| slide gui, 2.34.156.9 | Tr123, 2.34.172 |
| substring, 2.34.156.1 | Tr321, 2.34.173 |
| chemical formula, 2.34.156.10 | Trace, 2.34.174 |
| Transform, 2.34.176 | icm, 2.37.2 |
| Transpose, 2.34.177 | a_, 2.8.1 |
| Trim, 2.34.178 | abbr, 1.6 |
| chemical, 2.34.179 | abbreviations, 1.6 |
| sequence, 2.34.180 | absolute to cell x y z, 2.34.192.4 |
| Turn, 2.34.181 | accFunction, 2.24.2 |
| Type, 2.34.182 | acceptor, 3.6.1 |
| molcart, 2.34.182.2 | access large sdf file, 2.33.82.24 |
| soap, 2.34.182.1 | accessMethod, 2.22.2 |
| Z, 5.10 | accessible residues, 3.3.6 |
| Unique, 2.34.183 | surface, 2.33.63.14, 5.8.15 |
| Unix, 2.34.184 | accessing sections, 2.33.108.24 |
| Uppsala, 2.36.42 | accuracy, 2.34.136.4 |
| server, 2.36.43 | acidity constant, 2.33.87.11, 2.33.87.12 |
| V_, 2.8.1 | activate fog, 2.33.23.24 |
| Value, 2.34.185 | alignment, 2.33.87.40 |
| soap, 2.34.186 | document, 2.33.87.40 |
| Vector, 2.34.16, 2.34.187, 2.34.187.1, 2.34.187.3 | tab, 2.33.87.40 |
| symmetry transformation, 2.34.187.2 | table, 5.9.2.4 |
| Vectorproduct, 2.34.187.1 | add, 2.33.1 |
| Vectorsymmetrytransformation, 2.34.187.2 | column, 2.33.1.1 |
| Version, 2.34.188 | function, 2.33.1.1.1 |
| View, 2.34.190 | matrix, 2.33.1.2 |
| Volume, 2.34.189 | slide, 2.33.1.3 |
| WEBAUTOLINK, 2.23.16 | table, 2.33.1.4 |
| WEBLINK, 2.23.15 | row, 2.33.1.4 |
| Warning, 2.34.191 | addBfactor, 2.19.1 |
| Wavefront format, 2.33.82.22 | adding atoms to non-ICM objects, 2.33.7.1 |
| XML, 2.12 | columns to table, 2.33.1.1 |
| Xyz, 2.34.192 | hydrogens, 2.36.13 |
| axes, 2.34.192.8 | in place, 2.14.4 |
| chemical match, 2.34.192.6 | to slideshow, 2.33.1.3 |
| fract, 2.34.192.4 | admet selection, 3.13.3.4 |
| mesh, 2.34.192.3 | advanced chemical search, 3.6 |
| points, 2.34.192.1 | operations, 2.14.6 |
| rings, 2.34.192.2 | ops, 2.14.6 |
| transformed xyz, 2.34.192.5 | ahfs, 2.34.44.6 |
| vector2matrix, 2.34.192.7 | ali_seq_project, 2.34.156.5 |
| Z-shift, 2.19.35 | alias, 2.33.2 |
| ZEGA, 5.10.9 | align, 2.33.3 |
| intro, 1.4.3.6 | 3D, 2.33.3.5 |
| _NAME, 2.33.87.47 | faq, 3.3.2 |
| _chemBatch, 3.1.2.5 | heavy, 2.33.3.6 |
| _chemSuper, 3.15 | how to, 3.3.2 |
| _confGen, 3.16 | chemical, 2.33.86.1 |
| _dockScan, 3.13.2.5 | fragments, 2.33.3.4 |
| _macro, 2.37.1 | intro, 1.4.3.3 |
| file, 2.37.1 | number, 2.33.3.2 |
| _startup, 3.1.2.3 | chemical, 2.33.3.1 |
| file, 2.37.2 | res numbers, 2.33.3.2 |
| sequences, 2.33.3.3 | a tables, 2.33.1.4 |
| alignMethod, 2.22.3 | column, 2.33.4.3 |
| alignMinCoverage, 2.19.2 | command, 2.33.4 |
| alignMinMethod, 2.19.2 | sequence, 2.33.4.1 |
| alignOldStatWeight, 2.19.3 | to group, 2.33.4.1 |
| alignTwoSequences, 2.36.1 | stack, 2.33.4.2 |
| aligned residues, 2.34.128 | tables, 2.33.50 |
| alignment, 2.33.22.26, 2.33.87.27, 2.33.87.35, 2.33.87.55, 5.1.1 | by shared column, 2.33.4.3 |
| as table, 2.34.160.2 | appending, 2.33.1.1 |
| block length, 2.18.22 | an element, 2.14.4 |
| secondary structure, 2.35.1 | menu items, 2.23.10.1 |
| cleaning, 2.34.146.4 | representations to a slide, 2.33.23.21 |
| color by property, 2.33.87.34 | rows to matrix, 2.33.1.2 |
| coloring, 2.21.1 | area under curve, 2.36.21 |
| conservation, 2.36.8 | arguments, 2.33.62 |
| distance, 2.34.137.13 | arithmetic operations, 2.14.2 |
| editor, 2.4 | arithmetics, 2.14 |
| extraction, 2.34.5 | aromatic planes, 2.36.4 |
| gap format, 5.1.1.1 | array, 2.33.70.4, 5.1.6, 5.7.3.1 |
| intro, 1.4.3.4 | assignment, 2.14.1 |
| projection, 2.34.156, 2.34.156.5, 2.34.156.6 | derivative, 2.34.146.1 |
| score, 2.34.136.7 | overlap, 2.34.136.1 |
| sequence reordering, 2.34.5 | parray, 2.33.22.31 |
| strength, 2.34.122.5 | size, 2.34.102 |
| structural, 2.33.3.5, 2.34.5 | subset, 2.6 |
| to sequence transfer, 2.34.122.1 | arrow from selection, 2.36.36 |
| text conversion, 2.34.156.4 | length, 2.33.87.26 |
| weighted, 2.34.5 | as2_out, 2.24.14 |
| gapExtension, 2.19.18 | as_, 2.8.8 |
| gapOpen, 2.19.19 | as_graph, 2.23.5.50, 2.23.5.51, 2.34.137.5 |
| alignment_as_text, 2.34.156.4 | as_out, 2.24.13 |
| aliphatic amines, 2.33.68.2 | assign, 2.33.5 |
| all, 5.1.2 | residue, 2.33.6.1 |
| torsions table, 3.3.11 | ring conformation to template, 2.33.64.4 |
| alpha, 2.23.5.57, 2.33.87.42, 5.1.3 | sstructure, 2.33.5.1 |
| channel, 2.23.9.10 | segment, 2.18.20, 2.33.5.2 |
| alternative flag, 2.33.87.18 | assignment, 2.14.1 |
| amber, 5.1.4 | atc code, 2.34.44.6 |
| amino acid, 2.21.24, 2.34.172, 2.34.173 | atom, 2.33.13.1, 5.1.7 |
| colors, 2.34.29.3 | centers within, 2.34.151 |
| labels, 2.33.3.2 | code file, 2.37.4 |
| and, 2.14.3 | coordinates, 2.34.192.1 |
| angle rotation, 2.36.84 | flickering, 2.33.87.3 |
| angles, 2.34.102.3 | label font, 2.37.15 |
| angular hbond dependence, 2.23.5.26 | labels, 2.33.87.2 |
| animated story, 5.8.14 | name, 2.33.3.1, 2.34.79 |
| animation, 2.33.23.5, 2.33.23.6, 3.9 | pairs, 2.33.87.68, 2.33.87.69, 2.34.160.10 |
| annotation, 2.33.22.26, 2.33.87.26, 2.33.87.27 | proximity to surface, 2.33.88.9 |
| apf, 3.15 | selection by number, 2.34.66.4 |
| append, 5.1.5 | type, 2.34.182 |
| atomLabelStyle, 2.22.4 | to protein, 2.33.70.3 |
| atomSingleStyle, 2.22.5 | width, 2.23.9.14 |
| atomic contributions, 2.33.88.20, 2.33.88.21 | bonded atoms, 2.34.101.1 |
| coordinate transfer, 2.33.87.3 | born radii, 2.33.88.9 |
| property fields, 3.15 | boundary element, 5.2.5 |
| solvation contributions, 2.34.7 | matrix, 2.34.90.10 |
| in residue, 2.34.63 | box, 2.34.21 |
| alternative position, 2.33.87.18 | break, 2.33.6 |
| selecting, 2.8.8 | brightness, 2.23.5.33 |
| translate, 2.33.87.3 | build, 2.33.7 |
| attenuation by occupancy, 2.33.63.25 | atom, 2.33.7.1 |
| auc enrichment, 2.36.21 | column, 2.33.7.2 |
| auto saving log, 2.22.11 | faq, 3.8.1 |
| autoSavePeriod, 2.18.1 | from string, 2.33.7.8 |
| avi, 2.33.108.31 | helix, 3.10.5 |
| axis, 5.1.8 | how to, 3.8.1 |
| axisLength, 2.19.4 | hydrogen, 2.33.7.9 |
| background, 2.34.29.2 | loop, 2.33.7.6 |
| color, 2.19.9 | model, 2.33.7.5, 2.33.108.9 |
| ball, 2.33.87.2, 5.2.2 | molcart, 2.33.7.10 |
| base, 5.2.1 | sequence, 2.33.7.3 |
| pair diagram, 2.23.5.16 | smiles, 2.33.7.7 |
| basis set, 2.33.82.21, 2.33.108.17 | string, 2.33.7.8 |
| batch chemical processing, 3.1.2.5 | tautomer, 2.33.7.4 |
| docking, 3.13.2.5 | built-in functions, 5.5.5 |
| beta, 5.2.3 | plot, 2.33.87.53 |
| bfactor circles, 2.23.5.3 | atoms, 2.33.14 |
| biased probability monte carlo, 2.33.69 | contact surface, 2.33.14 |
| binary file table of contents, 2.33.82.2 | molecule, 2.33.13.1 |
| files, 2.33.108.2 | number of bonds, 2.34.137.3 |
| string, 5.2.4 | variables, 2.33.14 |
| key, 2.33.87.43 | cage, 2.36.4 |
| binding energy, 3.7.4 | calcArea, 2.36.2 |
| pocket finding, 3.4.2 | calcBindingEnergy, 2.36.3 |
| pockets, 2.33.90.1 | calcDihedralAngle, 2.36.4 |
| side comparison, 2.36.8 | calcEnergyStrain, 2.36.20 |
| site analysis, 3.4.2 | calcEnsembleAver, 2.36.5 |
| biological symmetry, 2.33.87.9 | calcMaps, 2.36.6 |
| vector, 2.34.66.3 | calcPairSeqIdsFromAli, 2.36.7 |
| to integers compression, 2.34.66.3 | calcPepHelicity, 2.36.9 |
| blast, 2.33.108.25 | calcProtUnfoldingEnergy, 2.36.10 |
| files, 2.33.108.25 | calcRmsd, 2.36.11 |
| blast-formatted database, 2.33.35.3, 2.33.108.25 | calcRoc, 2.36.21 |
| blending, 2.33.108.31 | calcSeqContent, 2.36.12 |
| images, 2.34.158.2 | calcSeqSimilarity, 2.36.8 |
| blob, 5.2.4 | calculate phases, 3.11.2 |
| bold, 2.33.87.38.1 | call, 2.33.8 |
| bond angle bending, 2.37.5 | canonical form, 2.34.45 |
| errors, 2.33.88.12 | carboxylic acid, 2.33.68.2 |
| stretching, 2.37.6 | cartesian cooridnates, 2.34.192 |
| cavities, 2.33.90.1 | search, 2.33.35.10, 2.33.86.1, 2.34.102.2 |
| cavity, 5.3.1 | similarity, 3.5 |
| analysis, 3.3.13 | simplification, 2.34.178 |
| ccp4 maps, 2.33.82.27 | spreadsheet, 2.33.12, 2.33.82.48, 2.33.82.49, 2.33.82.50, 2.33.87.47, 2.33.108.11 |
| cd, 2.33.87.21 | structure from smiles, 2.33.87.7 |
| cell axis vectors, 2.34.192.8 | substructure, 2.33.35.4 |
| specific icm commands, 5.9.2.4 | mask, 2.33.63.21 |
| center, 2.13.1, 2.33.9 | superposition, 2.22.7, 2.34.133, 3.15 |
| cgi programming with icm, 2.11 | table, 2.25 |
| chain breaks, 2.23.5.7, 2.23.5.8, 2.34.137.1 | text format, 5.6.11 |
| symbol, 2.33.87.9 | topological descriptors, 2.34.40 |
| change atom position, 2.33.87.3 | view, 2.33.87.54 |
| sequence position in multiple alignment, 2.33.70.7 | chemistry, 2.25, 2.34.27 |
| unix directory, 2.33.87.21 | chiral isomer generation, 2.33.30 |
| changing local stick radii, 2.33.87.86 | chirality, 2.20.16, 2.33.30 |
| surface dot size, 2.23.5.54 | choosing ligands, 3.13.1.2 |
| channel, 2.23.14.2 | chroma, 2.34.90.4 |
| charge, 2.23.14.4, 5.3.2 | cif, 2.33.82.48 |
| compounds, 2.33.68.2 | circular permutation of coordinates, 2.33.67 |
| prediction, 2.33.87.11, 2.33.87.12 | clamp values to range, 2.34.178 |
| state, 2.33.29 | clashThreshold, 2.19.5 |
| change, 2.33.87.10 | clashes, 2.33.63.16 |
| chem formula, 2.34.156.10 | labels, 2.34.166 |
| chemSuper3D, 2.36.22 | classification, 2.34.44.6 |
| chemical, 2.23.14.7, 2.25, 2.33.35.9, 2.34.69 | clear, 2.33.10 |
| 2D drawings, 2.33.63.9 | graphical selection, 2.33.10 |
| SMARTS search, 2.33.35.5 | screen, 2.33.10 |
| atom annotation, 2.33.22.20 | click and lock, 5.9.2.4 |
| database, 3.5 | clipping plane, 2.23.5.9, 2.23.5.10, 2.23.5.11, 2.33.70.6, 5.3.3 |
| decomposition, 2.33.63.27, 2.33.90.2, 2.33.90.3 | closer than threshold, 2.34.44.9 |
| descriptors, 2.34.41, 5.7.12 | closest sequence, 2.34.99.3 |
| distance, 2.34.44.8, 2.34.136.2, 2.34.136.3 | value, 2.34.56.1 |
| diversity, 3.14.6.4 | cluster, 2.34.154.1 |
| drawing, 2.23.9.14 | center, 2.34.70.9 |
| quality, 2.23.9.15 | centers, 2.13.1 |
| fingerprints, 2.9 | selection, 2.34.70.9 |
| formula, 2.34.156.10 | tree, 2.34.99.5 |
| fragment counting, 2.34.102.2 | size, 2.34.102.1 |
| functions, 2.27 | clustering, 2.13, 2.33.63.37, 2.33.63.38, 2.33.90.7 |
| keys, 2.33.63.21 | clusters, 2.13, 2.13.1 |
| match coordinates, 2.34.192.6 | cnMethodAverage, 2.22.6 |
| matching, 2.33.35.4, 2.33.82.49, 2.33.82.50, 2.34.133, 2.34.155 | cnWeight, 2.19.6 |
| models, 2.34.99.1 | code, 2.34.44.6 |
| modification, 2.33.66, 2.33.68, 2.36.37 | coil, 5.3.4 |
| name, 2.34.99.6 | collection, 2.12, 5.3.6 |
| normalization, 2.33.68 | color, 2.23.5.33, 2.33.11 |
| rules, 2.33.68.4 | accessibility, 2.33.13 |
| pattern, 2.26, 2.33.86.1 | background, 2.33.13.2 |
| search, 2.34.56.3 | example, 3.2.7 |
| reaction product generation, 2.33.63.33 | accessibility, 3.2.11 |
| atom contributions, 2.33.12 | compare, 2.18.12, 2.18.15, 2.33.14 |
| bfactor, 3.2.9 | angles, 2.33.14.2 |
| charge, 3.2.12 | atom, 2.33.14.1 |
| electrostatic potential, 2.18.5 | by rmsd without superposition, 2.33.14.1 |
| hydrophobicity, 3.2.10 | chemical tables, 2.33.35.10 |
| pharmacophore, 2.33.12 | patch only, 2.33.14.3 |
| potential, 2.36.25 | rmsd, 2.33.14.1 |
| shape depth, 2.33.13 | surface, 2.33.14.3 |
| chemical, 2.33.12, 2.33.86.1 | variables, 2.33.14.2 |
| choice, 2.19.9 | compareMethod, 2.22.7 |
| file, 2.37.15 | comparing two sarrays, 2.34.105 |
| grob, 2.33.13.4 | comparison, 2.34.70.10 |
| by atom selection, 2.33.13.4.3 | operations, 2.14.5 |
| atoms, 2.23.7.1 | complete view, 2.34.144 |
| map, 2.33.13.4.4 | compound accessibilities, 3.14.4.1 |
| matrix, 2.33.13.4.2 | array, 2.25 |
| potential, 2.33.13.4.5 | property prediction, 2.33.51.2 |
| unique, 2.33.13.4.1 | compress, 2.33.15 |
| label, 2.33.13.5 | alignment, 2.33.15.1 |
| map, 2.33.13.6 | binary, 2.33.15.4 |
| by value, 2.33.23.16 | conf, 2.33.15.3 |
| molecule, 2.33.13.1 | grob, 2.33.15.2 |
| names, 2.34.29 | in place, 2.33.15.4 |
| object, 2.33.11.2 | objects, 2.33.15 |
| preference, 2.19.10 | stack, 2.33.15.3 |
| specification, 2.33.11.1 | compressed table view, 2.33.87.24 |
| surface by conservation, 2.33.13.3 | conditional buttons, 5.5.5 |
| table, 2.34.29.3 | string, 2.34.156.7 |
| volume, 2.33.13.7 | conf, 2.33.87.61, 2.33.108.41, 2.34.160.6, 5.3.12, 5.8.9 |
| column, 5.3.5 | data, 2.34.160.6 |
| correlation, 2.33.89.3 | confgen, 3.16 |
| function, 2.33.7.2 | configuration, 2.37.14 |
| names, 2.33.83.1, 2.33.86.2 | file, 2.33.108.42 |
| of grobs, 2.34.109 | memory usage, 2.18.7 |
| selection, 2.34.99 | conformation comparison, 2.22.7 |
| combinatorial compounds, 2.34.27 | conformational ensemble, 2.33.7.5.2 |
| libraries, 2.33.63.33, 2.34.102.4 | generator, 2.33.64.1, 3.16 |
| PDB, 2.36.92 | interpolation, 2.33.23.6 |
| transformations, 3.10.4 | stack, 2.33.108.41, 5.3.12, 5.8.9 |
| combining plots, 2.33.63.32 | compression, 2.33.15.3 |
| receptor and ligand stacks, 2.33.4.2 | file, 2.37.7 |
| command, 2.34.99.4, 5.3.10 | transition, 2.36.38 |
| line editing, 2.2 | conformer storage, 2.33.61.5, 2.33.92.2 |
| help, 2.33.45 | conformers, 3.16 |
| options, 2.1 | connect, 2.33.16 |
| word list, 3.1.5 | chains with alignments, 2.33.55 |
| commands, 2.22.11, 5.1.1 | molcart, 2.33.16.1 |
| communication protocols, 2.31 | consensus, 2.19.7 |
| comp, 2.34.105 | coloring, 2.19.12, 2.23.2 |
| comp_matrix, 2.33.87.20, 2.33.88.16, 5.3.11 | definitions, 2.23.1 |
| conservation, 2.34.122.5, 2.34.136.7 | neighbors, 2.34.101.1 |
| constant, 2.5 | covalently attached molecule, 2.34.101.1 |
| constants, 2.5 | cpk, 2.19.35, 5.3.13 |
| contact areas, 2.34.90 | create a covalent bond, 2.33.63.2 |
| continue, 2.33.17 | pharmacophore, 2.36.87 |
| contour lines, 2.34.32 | creating a local patch object, 2.33.18.2 |
| surfaces, 2.23.7.5 | credits, 4.5 |
| contouring density, 2.33.63.14 | crypt, 2.33.20 |
| contrast, 2.23.5.33 | crystal axis vectors, 2.34.16 |
| conversion, 5.1.6 | symmetry transformation, 3.10.2 |
| to real array, 2.34.168 | transformations, 2.34.176 |
| convert, 2.33.18, 2.33.18.2, 3.13.2 | crystallographic cell, 2.33.67 |
| 3D to chemical, 2.34.27 | occupancy, 2.34.107 |
| 3D/0D to 2D, 2.33.63.9 | symmetry intro, 1.4.2.4 |
| ICM object to PDB, 2.33.94 | crystallography, 2.34.129 |
| and reroot, 2.33.18.4 | csv format, 2.33.82.44 |
| chemical 3D, 2.36.82 | csym, 1.4.2.4 |
| and optmimize geometry, 2.36.83 | cube, 2.23.14.2 |
| comp, 2.33.18.1 | current, 5.3.9 |
| comparison, 2.33.18.1 | map, 5.3.7 |
| fragments, 2.33.18.2 | object, 5.3.8 |
| mol, 2.33.18.3 | working directory, 2.34.108 |
| object 3D and optmimize geometry, 2.36.85 | cursor action, 5.9.2.4 |
| macro, 2.36.13 | custom alignment color, 2.23.5.1 |
| pdb, 3.8.2 | field, 2.33.87.51 |
| to 3D, 2.33.87.8 | interaction, 2.33.88.37 |
| ICM object, 2.36.86 | menu, 2.32, 2.33.82.3 |
| iarray, 2.34.166 | customization, 3.1.2 |
| icm-object, 2.33.18 | environment, 2.32 |
| integer, 2.34.166 | and paste chemicals, 2.23.9.14, 2.23.9.15 |
| convert2Dto3D, 2.36.85 | cyclic temperature protocol, 2.19.46 |
| convert3Dto3D, 2.36.86 | cylinder, 2.23.14.2 |
| convertObject, 2.36.13 | cz32, 4.5 |
| converting a chemical, 2.33.18.3 | data visualization, 2.33.63.38 |
| pdb-chemical, 3.13.2 | database, 5.4.1 |
| alignment to table, 2.34.160.2 | browser, 2.33.61.3 |
| chemicals, 3.13.2.3 | connection, 2.33.16.1 |
| table columns into matrix, 2.34.90.6 | file, 3.5.1 |
| to, 2.34.123 | import, 2.33.63.26 |
| cool, 2.36.40 | date, 2.33.21, 2.34.156.2 |
| pictures, 2.23.5.30 | array, 2.33.21 |
| cooling schedule, 2.19.46 | dcMethod, 2.22.8 |
| coordinate frame, 2.19.4, 2.33.23.4 | dcWeight, 2.19.8 |
| coordinates, 2.23.14.7 | decomposition, 2.33.63.27, 2.33.90.2, 2.33.90.3 |
| copy, 2.33.19 | deep learning, 2.33.52 |
| chemical image, 2.23.9.15 | defCell, 2.24.1 |
| file, 2.21.26 | defSymGroup, 2.18.2 |
| site, 2.33.87.28 | default atom colors, 2.33.87.16 |
| correlation matrix, 2.34.163 | color of label, 2.19.11 |
| covalent bound count, 2.34.137.3 | parameters, 2.22.1 |
| define axis, 3.10.3 | rows, 2.33.22.32 |
| defining space box, 2.34.21 | term, 2.33.22.33 |
| dehtml, 2.34.126.3 | tether, 2.33.22.35 |
| del, 2.33.22.9 | tree, 2.33.22.36 |
| delete, 2.33.22 | variable, 2.33.22.6 |
| 3D graphics panel, 2.33.103 | views, 2.33.22 |
| alias, 2.33.22.2 | backbone, 2.34.137.1 |
| array element, 2.33.22.6 | restraint, 2.33.22.18 |
| index, 2.33.22.6 | deleting, 2.33.22.26 |
| selection, 2.33.22.1 | sites by number, 2.33.22.24 |
| atom, 2.33.22.7 | delphi, 2.36.25 |
| bond, 2.33.22.14 | density correlation, 2.19.8, 3.11.3 |
| boundary, 2.33.22.15 | fitting, 2.22.8 |
| chemical, 2.33.22.37 | in unit cell, 2.33.63.23 |
| fragment, 2.33.22.37 | densityCutoff, 2.19.13 |
| selection, 2.33.22.37 | dependent columns, 2.33.1.1.1 |
| class, 2.33.22 | depth cueing, 2.33.13.7, 5.4.2 |
| column table, 2.33.22.16 | depth-cueing, 2.19.17 |
| conf, 2.33.22.17 | desolvation, 2.22.25 |
| directory, 2.33.22.8 | detecting bad covalent geometry, 2.33.88.12 |
| disulfide bond, 2.33.22.27 | proximity, 2.34.44.9 |
| drestraint, 2.33.22.18 | dialog generation, 2.34.11 |
| element, 2.33.22.31 | in html documents, 2.33.44 |
| file, 2.33.22.9 | tables, 2.33.44 |
| from array, 2.33.22.6 | scripting, 2.34.11 |
| hydrogen, 2.33.22.11 | dielConst, 2.19.14 |
| label, 2.33.22.19, 2.33.22.20 | dielConstExtern, 2.19.15 |
| chemical, 2.33.22.20 | dielectric constant, 2.19.14 |
| link, 2.33.22.21 | diff, 2.34.105 |
| map, 2.33.22.22 | dihedral, 2.36.4 |
| molcart, 2.33.22.3 | angle, 2.33.63.19 |
| molecule, 2.33.22.13 | calculation, 3.3.10 |
| object, 2.33.22.12 | directory, 2.33.22.8, 2.33.63.5, 2.34.135 |
| parray, 2.33.22.36 | display, 2.33.23 |
| element, 2.33.22.36 | GUI window, 2.33.23.26 |
| peptide bond, 2.33.22.28 | box, 2.33.23.7 |
| plot, 2.33.22.4 | clash, 2.19.5, 2.33.23.8 |
| salts, 2.33.68.3 | contact, 2.33.63.16 |
| selection, 2.33.22.5 | drestraint, 2.33.23.9 |
| selftether, 2.33.22.34 | field, 2.23.5.3 |
| sequence, 2.33.22.23 | from script, 2.33.23.3 |
| session, 2.33.22.10 | gradient, 2.33.23.10 |
| shell object, 2.33.22.1 | grob, 2.33.23.11 |
| site, 2.33.22.24 | label, 2.33.23.12 |
| alignment, 2.33.22.26 | gui, 2.33.23.26 |
| sstructure, 2.33.22.25 | hbond, 2.33.23.13 |
| stack, 2.33.22.29 | label, 2.33.23.15 |
| object, 2.33.22.30 | map, 2.23.5.13, 2.33.23.16 |
| system, 2.33.22.9 | model, 2.33.23.1 |
| table, 2.33.22.32 | new, 2.33.23.2 |
| offscreen, 2.33.23.3 | global weight, 2.19.6 |
| origin, 2.33.23.4 | set, 2.33.87.22 |
| ribbon, 2.33.23.18 | type, 5.4.7 |
| rotate, 2.33.23.5 | drop, 2.19.16 |
| site, 2.33.23.19 | drug, 2.12 |
| skin, 2.33.23.20 | ds3D, 2.36.31 |
| slide, 2.33.23.21 | dsCellBox, 2.36.15 |
| stack, 2.33.23.6 | dsChem, 2.36.17 |
| string, 2.33.23.22 | dsCustom, 2.36.18 |
| surface, 2.33.23.20 | dsPocket, 2.36.28 |
| area, 2.23.5.3 | dsPropertySkin, 2.36.19 |
| tethers, 2.33.23.23 | dsPrositePdb, 2.36.24 |
| trajectory, 2.33.23.17 | dsRebel, 2.18.5, 2.23.14.6, 2.36.25 |
| volume, 2.33.23.24 | dsSeqPdbOutput, 2.36.26 |
| window, 2.3, 2.33.23.25 | dsSkinLabel, 2.36.27 |
| distance, 2.23.5.24, 2.34.41, 5.4.3 | dsStackConf, 2.36.29 |
| averaging, 2.22.6 | dsVarLabels, 2.36.30 |
| contact-based, 2.34.23, 2.34.23.1 | dsXyz, 2.36.32 |
| geometry, 5.4.4 | dump database, 2.33.108.7 |
| matrix, 2.34.160.5, 2.36.7 | dynamic gui, 5.5.5 |
| between stack conformations, 2.34.90.11 | ecepp, 5.5.1 |
| restraint, 5.4.6 | edit, 2.33.24 |
| file, 2.37.9 | files, 2.23.14.1 |
| type file, 2.37.8 | eigen value factorization, 2.34.45 |
| restraints, 2.33.87.22 | eigendecomposition of a matrix, 2.34.45 |
| distances, 2.34.102.3 | eigenvalues, 2.34.45 |
| distribution, 1.3 | eigenvectors, 2.34.45 |
| comparison, 2.34.136 | electro intro, 1.4.2.9 |
| disulfide bond, 5.4.5 | electroMethod, 2.22.9 |
| diverse subset, 3.14.6.4 | density, 2.23.7.5, 2.33.87.36, 2.33.88.21, 2.36.42, 2.36.43 |
| dividing chemical into individual molecules, 2.34.154.4 | around selection, 2.19.25 |
| dna to protein sequence translation, 2.34.175.1 | map generation, 2.19.1 |
| translate, 2.34.175.1 | maps, 2.23.14.1 |
| dockScan, 3.13.2.5 | electrostatic boundary matrix, 2.34.90.10 |
| docking, 2.36.89 | coloring, 2.23.14.6 |
| intro, 3.13.2.1 | isopotential surfaces, 2.33.63.13 |
| result viewing, 2.36.28 | potential, 2.33.13.4.5 |
| simple models, 3.14.3 | solvation, 3.7.2 |
| timing, 3.13.1.3 | surface, 2.36.25 |
| with template, 3.13.2.6 | troubleshooting, 5.7.13 |
| documents, 5.5.8 | electrostatics, 2.23.14.6 |
| dollar separated file, 2.33.82.44 | intro, 1.4.2.9 |
| dominant color, 2.34.29.2 | ellipsoid, 2.34.163 |
| donor, 3.6.1 | elseif, 2.33.25 |
| plot intro, 1.4.3.2 | empty model, 2.34.109 |
| dots, 2.33.76 | endfor, 2.33.26 |
| dotted surface, 2.23.5.56 | endif, 2.33.27 |
| double click action, 5.9.2.4 | endmacro, 2.33.28 |
| drestraint, 2.33.88.18, 5.4.6 | endwhile, 2.33.33 |
| generate from structure, 2.33.63.7 | energetics, 3.7 |
| profile, 2.36.84 | faq, 1.3 |
| terms, 2.17 | cheminformatics, 3.14.6 |
| ensemble, 2.33.61.1, 2.33.92.1 | chemsuper, 3.14.5 |
| average, 3.7.5 | mac gui preferences, 3.14.6.2 |
| entropy of alignment, 2.34.136.7 | molcart dump, 3.14.6.3 |
| atom, 2.33.18.4 | query, 3.14.6.1 |
| enumerate, 2.33.29, 2.33.30, 2.33.31, 2.33.32 | multiple chem overlay, 3.14.5.1 |
| charge, 2.33.29 | residue table, 3.14.4.1 |
| chiral, 2.33.30 | fast Fourier transform, 2.33.63.24 |
| library, 2.33.32 | sequence search, 2.33.35.3 |
| tautomer, 2.33.31 | fasta, 2.23.12.15, 5.5.2 |
| enumeration, 2.34.27 | format, 2.33.108.1 |
| eps files, 2.21.23 | feature table, 5.8.6.1 |
| equipotential surface, 2.34.32 | in sequences, 2.33.87.26 |
| error SOAP services, 2.34.49 | ffMethod, 2.22.12 |
| ignoring, 2.21.25 | field, 2.33.87.35 |
| error/warning bits cleanup, 2.33.10 | name, 2.34.99.2 |
| errorAction, 2.22.10 | file, 2.33.108.24 |
| vrestraint vs_var, 2.33.87.82 | exists, 2.34.50 |
| evalSidechainFlex, 2.36.90 | list, 2.34.59 |
| evol tree intro, 1.4.3.5 | length, 2.34.55 |
| evolutionary tree intro, 1.4.3.5 | object origin, 2.34.55 |
| exact, 2.33.35.9, 2.33.35.10 | permissions, 2.34.55 |
| match, 2.34.126.1 | time modified, 2.34.55 |
| example scripts, 3.14 | type, 2.34.55 |
| excel, 2.33.82.44 | files, 2.37 |
| exit, 2.33.34 | filling volume, 2.23.5.11 |
| exitSeslogStyle, 2.22.11 | filter, 2.33.35.10, 2.33.61.3 |
| expanding substructure match, 2.33.87.70 | functions, 5.5.4 |
| export, 2.33.108.7 | filtering table rows, 5.5.4 |
| animation, 2.33.108.31 | find, 2.33.35 |
| pdb, 2.23.14.14 | alignment, 2.33.35.1 |
| exporting sdf, 2.33.108.11 | and replace a chemical pattern, 2.33.68.1 |
| expression shortcuts, 2.10.1.2 | chemical fragment, 2.33.68 |
| tags, 2.24.9 | chemical, 2.33.35.5 |
| comparison, 2.14.5 | pattern, 2.33.68 |
| arithmetics, 2.14.2 | substructure, 2.34.70.2 |
| assignment, 2.14.1 | database, 2.19.2, 2.33.35.2 |
| comparison, 2.14.5 | fast, 2.33.35.3 |
| logical, 2.14.3 | family of commands, 2.33.35 |
| extending to bonded hydrogens, 2.34.137.6 | in sarray, 2.34.70.8 |
| terminal atoms, 2.34.137.6 | molcart, 2.33.35.9, 3.5 |
| external process, 2.33.63.1 | molecule, 2.33.35.4 |
| extracting from Markush, 2.33.53 | motifs, 2.24.9 |
| icm script arguments, 2.34.59 | pattern, 2.33.35.8 |
| stack from object, 2.33.61.5 | pdb, 2.33.35.6 |
| ez25, 3.7 | pharmacophore, 2.33.35.11 |
| factor, 5.8.13 | prosite, 2.33.35.7 |
| false negatives, 2.34.136.4 | scaffold, 2.34.179 |
| family, 2.33.87.38.1 | table, 2.33.35.10 |
| findFuncZero, 2.36.35 | geometry optimization, 2.33.64.1 |
| findSymNeighbors, 2.36.16 | started, 1.7 |
| find_related_sequences, 2.36.33 | getting data from outside, 2.31 |
| finding long covalent bonds, 2.34.137.1 | started, 1.7 |
| fingerprint, 2.34.41 | global, 2.33.41 |
| fingerprints, 2.9 | glossary, 5 |
| to density, 2.22.8 | go, 2.34.44.6 |
| fix, 2.33.36 | goto, 2.33.42 |
| fixed branches, 2.34.137.2 | term, 2.19.20, 2.33.87.73 |
| flattening 3D molecule, 2.36.17 | gpWeights, 2.19.20 |
| flexible superimpose, 2.36.50 | graph matching, 2.34.133 |
| flow control, 2.15 | graphical box, 2.33.23.7 |
| fog, 2.19.17, 2.33.13.7, 2.33.23.24, 5.4.2 | row selection, 2.34.70.5 |
| color, 2.19.17 | selection, 2.34.137.5 |
| fogStart, 2.19.17 | graphics, 2.19.9, 2.33.87.4, 2.34.188, 3.2, 5.3.3 |
| fold search, 5.8.4 | card, 2.23.5.52 |
| foldbank.db, 2.37.3 | controls, 2.3, 2.37.15, 5.4.2 |
| folding procedure, 3.14.1 | exists, 2.34.50 |
| font, 2.33.56.1 | intro, 1.4.1, 1.4.1.4 |
| size, 2.33.87.38.1, 2.37.14 | learning, 3.2.1 |
| sizes, 3.14.6.2 | attributes, 2.19.4 |
| specification, 2.33.87.38.1 | fogStart, 2.19.17 |
| for, 2.33.37 | view vector, 2.33.87.80 |
| fork, 2.33.38, 2.34.70.1 | graphviz, 2.34.160.7 |
| formal charge, 2.23.5.20, 2.33.87.12, 5.3.2 | greedy matching, 2.10.1.4 |
| formatdb, 2.33.108.25 | grid energy, 2.33.88.21 |
| fprintf, 2.33.39 | potentials, 2.33.63.25 |
| fractional coordinates, 2.34.192.4 | grob, 5.5.3 |
| to abs coordinates, 2.34.16 | coloring, 2.33.13 |
| fragmented molecule, 2.33.18.2 | files, 2.37.10 |
| frame, 2.33.92, 2.33.108.31 | inside-out flip, 2.33.87.42 |
| fullscreen, 2.33.87.85 | normal directions, 2.33.87.42 |
| function, 2.33.40, 2.33.62 | vertex, 2.23.5.21 |
| columns, 2.33.1.1.1 | translate, 2.33.101 |
| functions, 5.1.1 | group, 2.33.43 |
| selecting in objects, 2.8.10 | by column, 2.33.43.4 |
| gamess, 5.5.6 | column, 2.33.43.4 |
| expansion, 2.34.146.4 | rename of table columns, 2.33.83.1 |
| gapExtension, 2.19.18 | replacement, 2.33.66 |
| gapFunction, 2.24.3 | select of table columns, 2.33.86.2 |
| gapOpen, 2.19.19 | sequence, 2.33.43.1 |
| gaussian averaging, 2.34.146.2 | unique, 2.33.43.2 |
| gcMethod, 2.22.13 | table, 2.33.43.3 |
| genbank, 2.23.12.15 | grouping table by a column, 2.33.87.24 |
| generalized arrays, 5.1.6 | gui, 2.33.44, 5.9.2.4 |
| generate intermediate conformers, 2.36.38 | exists, 2.34.50 |
| generating movie images, 3.9.2.1 | functions, 5.5.5 |
| genomics, 1.4.3.1 | panels, 2.33.103 |
| clustering, 2.33.43.2 | programming, 2.32, 2.33.44, 2.33.87.24 |
| intro, 1.4.3.1 | gvim text editor, 5.8.2 |
| hash, 2.12, 5.3.6 | html5, 2.11 |
| table, 5.3.6 | hue, 2.34.90.4 |
| haze, 2.19.17 | hydration, 2.23.14.2, 2.34.7 |
| hb, 2.19.21 | parameters, 2.37.13 |
| hbCutoff, 2.19.21 | hydrogen bond, 2.23.5.25, 2.23.5.26, 2.33.63.17, 5.5.7 |
| hbond, 2.23.5.25, 2.23.5.26, 2.33.22.6, 5.5.7 | bonding parameters, 2.37.12 |
| color, 2.33.23.14 | cutoff, 2.19.21 |
| display, 2.23.5.27, 2.23.5.28 | bonds, 2.34.102.3 |
| energy, 2.33.23.14 | display, 2.23.5.32 |
| list, 2.34.160.10 | placement, 2.33.87.25 |
| show, 2.33.88.23 | hydrophobicity profile, 3.3.12 |
| hbondMinStrength, 2.23.5.25 | iSee, 5.8.14 |
| faq, 3.3.4 | i_2out, 2.18.4 |
| how to, 3.3.4 | i_out, 2.18.3 |
| header, 2.33.1.1 | iarray, 2.33.22.6, 2.34.56.1, 2.34.66.2, 2.34.70.8, 5.6.1 |
| helical axis, 2.36.36 | making, 2.34.66.1 |
| cylinders, 2.23.5.42 | icb files, 5.8.14 |
| helicity, 3.7.6 | GUI, 2.33.87.40 |
| content calculation, 3.7.6 | algorithms, 4.3 |
| help, 2.33.45, 2.33.45.1, 2.33.45.2 | application refs, 4.4 |
| browser, 2.33.45.1 | literature, 4.3 |
| commands, 2.33.45.3 | archive, 2.33.82.2 |
| functions, 2.33.45.4 | arguments, 2.34.59 |
| getting, 3.1.1 | binary, 2.34.108 |
| word, 2.33.45.2 | branching, 2.15.2 |
| getting, 3.1.1 | commands, 2.33 |
| heterogenous environment, 2.23.14.2 | controls, 2.15 |
| hidden blocks, 5.1.1.1 | flags, 2.1 |
| display, 2.33.23.3 | functions, 2.34 |
| hydrogens, 2.23.5.32 | graphics, 3.2 |
| stack in object, 2.33.92.2 | history, 1.2 |
| hierarchical, 2.13 | jumps, 2.15.3 |
| highEnergyAction, 2.22.14 | learning, 3.1.4 |
| his-tags, 2.34.180 | loops, 2.15.1 |
| histogram, 2.33.63.32 | macros, 2.36 |
| 2D, 2.34.90 | main refs, 4.2 |
| history, 2.33.46, 2.33.108.40 | menus, 2.23.10.1 |
| delete, 2.33.22.10 | method literature, 4.4 |
| of ICM, 1.2 | molecules, 2.16 |
| homodel, 2.36.41 | object file, 2.37.18 |
| homology modeling, 1.4.2.2, 2.33.7.5, 2.33.87.68, 2.33.87.69, 2.35.1, 3.14.4 | preferences, 2.22.1 |
| faq, 3.14.4 | session, 2.22.11 |
| intro, 1.4.2.2 | shell, 3.1 |
| output, 2.33.7.5.3 | functions, 2.35 |
| steps, 2.33.7.5.1 | support, 1.3 |
| to export a molcart table, 3.14.6.3 | table, 2.23 |
| html, 2.11, 2.33.44, 2.34.99.4, 5.5.8 | ali, 2.37.31 |
| document order, 2.33.87.40 | all, 2.37.32 |
| tag removal, 2.34.126.3 | bbt, 2.37.5 |
| html-formatted text, 5.5.8 | bst, 2.37.6 |
| clr, 2.37.15 | imposing tether, 2.33.87.68, 2.33.87.69 |
| cmp, 2.37.33 | place, 2.14.4 |
| cn, 2.37.9 | ops, 2.14.4 |
| cnf, 2.37.7 | incidence, 2.34.90.13 |
| cnt, 2.37.8 | increasing the number of shell variables, 2.37.14 |
| cod, 2.37.4 | increment charge, 2.33.87.10 |
| col, 2.37.24 | index expressions, 2.6 |
| gro, 2.37.10 | in array, 2.34.70.4 |
| gui, 2.32 | substring, 2.34.70.3 |
| hbt, 2.37.12 | table, 2.33.108.24 |
| hdt, 2.37.13 | entry, 2.34.135.1 |
| htm, 2.37.11 | sdf-file path, 2.34.108 |
| iar, 2.37.35 | indices of labeled table rows, 2.34.70.6 |
| lps, 2.33.7.5.2 | selected table rows, 2.34.70.5 |
| map, 2.37.16 | infinity, 2.34.168 |
| mat, 2.37.37 | info, 2.33.48 |
| ob, 2.37.18 | molcart, 2.33.48.1 |
| pdb, 2.37.28 | inner join, 2.33.50 |
| prf, 2.37.34 | insert rows, 2.33.1.4 |
| rar, 2.37.38 | integer, 5.6.2 |
| res, 2.37.20 | array, 2.34.66, 5.6.1 |
| rs, 2.37.23 | output, 2.18.4 |
| rst, 2.37.22 | shell variables, 2.18 |
| sar, 2.37.36 | intensity, 2.34.90.4 |
| se, 2.37.30 | interaction cutoff, 2.20.27 |
| seq, 2.37.29 | lists, 2.20.27, 2.23.14.3 |
| tab, 2.37.25 | interactive docking, 1.4.2.8 |
| tot, 2.37.26 | interatomic distance, 2.19.10, 2.33.63.16, 2.34.151 |
| trj, 2.37.17 | potential, 2.33.87.51, 2.33.88.37 |
| var, 2.37.21 | interface comparison, 2.33.14.3 |
| vwt, 2.37.27 | residues, 3.3.5 |
| icmCavityFinder, 2.36.14 | torsions, 3.3.7 |
| icmMacroShape, 2.36.88 | view, 2.36.28 |
| icmPmfProfile, 2.36.23 | intermolecular bond, 2.33.70.3 |
| icmPocketFinder, 2.36.89 | internal coordinate file, 2.37.21 |
| icmscript, 2.33.82.4 | coordinates, 2.8.9 |
| arguments, 2.34.59 | positional restraints, 5.9.4 |
| if, 2.33.47 | interplanar angle, 2.36.4 |
| ignoring swiss secondary structure, 2.24.10 | interpolate, 2.34.29.1 |
| illegal smiles, 2.34.70.2 | interpolation, 2.34.29.1 |
| image, 3.2.6 | interruptAction, 2.22.15 |
| annotation, 3.2.5 | inverting array order, 2.34.66.2, 2.34.122.2 |
| center, 3.2.8 | italic, 2.33.87.38.1 |
| format, 5.9.3 | iterative overlay, 2.33.95 |
| high quality, 3.2.2 | superposition, 2.23.14, 2.33.96 |
| parray, 5.7.3.3 | javascript, 2.11 |
| resolution, 3.2.2 | join, 2.33.50 |
| rotation, 3.2.3 | tables, 2.33.50 |
| implicit continuous solvation, 2.37.13 | keep, 2.33.49 |
| solvation, 2.33.87.72 | kernel models quality, 2.34.136.4 |
| kmz, 5.5.3 | fit, 3.13 |
| l_antiAlias, 2.20.1 | setting, 3.13.2 |
| l_autoLink, 2.20.2 | view, 2.23.5.31 |
| l_bpmc, 2.20.3 | light, 2.23.5.34 |
| l_breakRibbon, 2.20.4 | lightness, 2.34.90.4 |
| l_bufferedOutput, 2.20.5 | limits, 2.37.14 |
| l_bug, 2.20.6 | line thickness, 2.23.12.5 |
| l_caseSensitivity, 2.20.7 | in 2D chemicals, 2.23.9.14 |
| l_commands, 2.20.8 | lineWidth, 2.19.22 |
| l_confirm, 2.20.9 | linear chemical notation, 2.26 |
| l_easyRotate, 2.20.10 | regression, 2.34.84 |
| l_info, 2.20.11 | group, 2.33.53 |
| l_minRedraw, 2.20.12 | internal variables of molecular object, 2.33.54 |
| l_neutralAcids, 2.20.13 | ms2ali, 2.33.55 |
| l_out, 2.20.14 | sequences to 3D objects, 2.33.55 |
| l_print, 2.20.15 | to alignment, 2.33.55 |
| l_racemicMC, 2.20.16 | variable, 2.33.54 |
| l_readMolArom, 2.20.17 | variables, 2.33.54 |
| l_showAccessibility, 2.20.18 | linked alignment, 2.34.99 |
| l_showMC, 2.20.19 | sequence, 2.34.99 |
| l_showMinSteps, 2.20.20 | linux shell, 2.33.97, 5.10.2 |
| l_showResCodeInSelection, 2.20.21 | list, 2.33.56 |
| l_showSites, 2.20.23 | binary, 2.33.57 |
| l_showSpecialChar, 2.20.22 | database, 2.33.58 |
| l_showSstructure, 2.20.24 | directory, 2.33.59 |
| l_showTerms, 2.20.26 | font, 2.33.56.1 |
| l_showWater, 2.20.25 | html documents, 2.34.99 |
| l_updateLists, 2.20.27 | molcart, 2.33.60 |
| l_warn, 2.20.28 | database, 2.33.60 |
| l_wrapLine, 2.20.29 | of files, 2.34.135 |
| l_writeStartObjMC, 2.20.30 | updates, 2.33.64 |
| l_xrUseHydrogen, 2.20.31 | listUpdateThreshold, 2.19.23 |
| label, 2.33.23.22, 5.6.3 | literature, 4.1 |
| fonts, 2.37.15 | load, 2.33.61 |
| large text, 2.33.82.40 | conf, 2.33.61.1 |
| latent, 2.34.102.6 | frame, 2.33.61.2 |
| learn, 2.33.51, 2.33.52, 2.34.109 | molcart, 2.33.61.3 |
| ann, 2.33.52 | object, 2.33.61.6 |
| atom, 2.33.51.1 | solution, 2.33.61.4 |
| chemical, 2.33.51.2 | stack object, 2.33.61.5 |
| left join, 2.33.50 | loadEDS, 2.36.42 |
| triangle of a matrix, 2.34.90.3 | loadEDSweb, 2.36.43 |
| library to replacement groups, 2.33.63.27, 2.33.90.2, 2.33.90.3 | local, 3.5.1 |
| ligand based screening, 3.15 | logarithm, 2.34.85 |
| binding, 2.36.28 | logical, 5.6.4 |
| dock faq, 3.13.2 | operations, 2.14.3 |
| docking, 3.13, 3.13.1, 3.13.2 | variables, 2.20 |
| intro, 1.4.2.6 | logical_ops, 2.14.3 |
| editing, 1.4.2.8 | logicals, 2.20 |
| editor, 2.36.37 | long axes, 2.34.163 |
| interrupt, 2.19.47 | reaction, 2.33.63.33 |
| library, 2.33.7.5.2 | sequence, 2.33.63.35, 2.33.63.36 |
| modeling, 1.4.2.3 | alignment, 2.33.63.34 |
| intro, 1.4.2.3 | from alignment, 2.33.63.34 |
| search, 2.33.7.5.2 | random, 2.33.63.36 |
| resolution shape, 2.36.88 | torsion, 2.33.63.19 |
| lower case, 2.34.167 | tree, 2.33.63.37 |
| ma29, 3.11 | object, 2.33.63.38 |
| macro, 2.33.62, 5.6.5 | unique, 2.33.63.39 |
| macro_def, 5.6.5 | makeAxisArrow, 2.36.36 |
| main ICM references, 4.2 | makeIndexChemDb, 2.36.44 |
| concepts, 3.10.1 | makeIndexSwiss, 2.36.45 |
| make, 2.33.63 | makePdbFromStereo, 2.36.46 |
| 3d label, 2.33.63.15 | makePharma, 2.36.87 |
| angle, 2.33.63.18 | makeSimpleDockObj, 2.36.47 |
| background, 2.33.63.1 | makeSimpleModel, 2.36.48 |
| blast index, 2.33.108.25 | making predictive models, 2.33.51 |
| bond, 2.33.63.2 | manual style, 1.5 |
| chain, 2.33.63.3 | map, 2.19.25, 2.23.5.13, 2.23.6.1, 5.6.6 |
| multi, 2.33.63.3 | aa property to sequence, 2.34.122.1 |
| boundary, 2.33.63.4 | averaging, 2.34.146.5 |
| directory, 2.33.63.5 | calculation, 2.33.63.24 |
| distance, 2.33.63.16 | conversion, 2.33.63.31 |
| disulfide bond, 2.33.63.6 | file, 2.37.16 |
| drestraint, 2.33.63.7 | fitting, 2.22.8 |
| factor, 2.33.63.8 | format, 5.6.6 |
| flat, 2.33.63.9 | mean value, 2.34.94 |
| chem_array, 2.33.63.9 | min value, 2.34.95 |
| grob, 2.36.36 | name, 2.34.86 |
| from image, 2.33.63.11 | operations, 5.6.6 |
| matrix, 2.33.63.12 | transformations, 2.34.146.5 |
| image, 2.33.63.11 | trimming, 2.34.22 |
| map, 2.33.63.10 | value sigma, 2.34.133 |
| matrix, 2.33.63.12 | on atoms, 2.33.87.36 |
| potential, 2.33.63.13 | contouring, 2.33.63.14 |
| skin, 2.33.63.14 | mapAtomMargin, 2.19.25 |
| hbond, 2.33.63.17 | mapSigmaLevel, 2.19.24 |
| image, 2.33.63.20 | mapping chemical equivalences, 2.34.70 |
| index fasta, 2.33.82.24, 2.33.108.24 | properties to sequence, 2.34.122.4 |
| key, 2.33.63.21 | and factors, 3.11 |
| map, 2.33.63.22 | margin, 2.23.6.1 |
| cell, 2.33.63.23 | mass-spectrometry functions, 2.33.30, 2.33.31, 2.33.32 |
| factor, 2.33.63.24 | matching chemicals, 2.34.70.2 |
| potential, 2.33.63.25 | hydrogens, 2.33.87.70 |
| xray, 2.33.63.31 | matrix, 5.6.7 |
| molcart, 2.33.63.26 | derivatives, 2.34.80 |
| molsar, 2.33.63.27 | new, 2.34.90.1 |
| pca, 2.33.63.29 | plot, 2.34.32 |
| peptide bond, 2.33.63.30 | map value, 2.34.91 |
| plot, 2.33.63.32 | maxColorPotential, 2.18.5, 2.36.25 |
| movie, 3.9.2 | type, 2.34.182 |
| mcBell, 2.19.26 | show atom types, 2.33.88.11 |
| mcJump, 2.19.27 | mnSolutions, 2.18.9 |
| mcShake, 2.19.28 | mncalls, 2.18.10 |
| mcStep, 2.19.29 | mncallsMC, 2.18.11 |
| mean force, 2.33.87.51, 2.33.88.37 | mnconf, 2.18.12 |
| median value, 2.34.93 | mnhighEnergy, 2.18.13 |
| membrane, 2.23.14.2 | mnreject, 2.18.14 |
| memorizing positions, 3.2.4 | mnvisits, 2.18.15 |
| menu, 2.33.65 | model reliability, 2.36.23 |
| script, 3.1.3 | modify, 2.33.66 |
| merge PDB, 2.36.92 | and reroot, 2.33.18.4 |
| arrays to table, 2.33.43.3 | chem, 2.33.68 |
| continuation lines, 2.33.82.39 | charge, 2.33.68.2 |
| objects, 2.33.70.2 | delete salt, 2.33.68.3 |
| parts of molecule, 2.33.70.3 | normalize, 2.33.68.4 |
| pdb, 3.4.4 | chemical column, 2.33.68.3 |
| sarray into string, 2.34.158 | find replace, 2.33.68.1 |
| stacks, 3.7.7 | molcart, 2.33.68.5 |
| tables, 2.33.4.3, 2.33.50 | rotate, 2.33.67 |
| merge2, 3.8.7 | modifyGroupSmiles, 2.36.37 |
| mergePdb, 2.36.92 | modules, 1.4.4 |
| several chemical, 2.34.158.1 | mol, 2.33.82.49, 2.33.82.50, 2.33.108.11, 2.33.108.24, 5.6.11 |
| merging into one molecule, 2.33.70.3 | file, 2.34.156.3 |
| mesh, 2.34.109, 2.34.189 | to icm, 2.33.18.3 |
| point radius, 2.23.5.21 | translation, 3.2.4 |
| score, 3.13.3.3 | mol-file to chem-table element, 2.34.109 |
| mfMethod, 2.22.16 | mol-format, 2.23.14.7 |
| mfWeight, 2.19.30 | mol2, 5.6.12 |
| mimel, 5.6.8 | molcart, 2.33.16.1, 3.5 |
| mimelDepth, 2.19.31 | connection options, 3.5.2 |
| mimelMolDensity, 2.19.32 | molecular, 2.34.58, 5.7.3.1 |
| minNumGrad, 2.33.64 | arrays, 5.7.3 |
| minTetherWindow, 2.18.8 | manipulations, 3.8 |
| minimization exit criteria, 2.33.64 | modifications, 3.8.5 |
| minimize, 2.18.10, 2.33.64 | object, 5.7.1 |
| cartesian, 2.33.64.1 | objects, 2.16 |
| loop, 2.33.64.2 | surface, 2.33.88.9, 5.8.7 |
| stack, 2.33.64.3 | views, 1.4.1.1 |
| tether, 2.18.8, 2.33.64.4 | volume, 2.34.114 |
| drop, 2.19.16 | molecule, 2.7 |
| minimizeMethod, 2.22.17 | create, 3.8.4 |
| missing bonds, 2.33.70.3 | properties, 2.33.87.34 |
| loop, 2.23.5.7, 2.23.5.8 | rotation, 3.2.3 |
| residues, 2.34.54.1 | translation, 3.2.3, 3.2.4 |
| triangles, 2.34.189 | create, 1.7.2 |
| mkUniqPdbSequences, 2.36.49 | intro, 1.7.2, 2.7 |
| mm26, 3.8 | sort/reorder, 2.33.89.5 |
| mmcif, 5.6.10 | selecting, 2.8.6 |
| mmff, 5.6.9 | molt, 3.5.1 |
| montecarlo, 2.18.11, 2.18.13, 2.18.14, 2.18.15, 2.18.19, 2.22.7, 2.33.69 | mute, 5.6.15 |
| local, 2.18.16 | mysql, 2.33.16.1 |
| trajectory, 2.33.23.17 | nLocalDeformVar, 2.18.16 |
| moprphing, 2.36.38 | nProc, 2.18.18 |
| more, 5.6.13 | nSsearchStep, 2.18.17 |
| morph, 2.33.23.6 | name, 2.34.79 |
| to tether target, 2.36.38 | atom fields, 2.33.87.34 |
| morph2tz, 2.36.38 | naming compounds, 2.33.87.47 |
| morphing, 2.33.23.6, 2.33.87.68, 2.33.87.69, 2.33.92.3 | nearest sequence, 2.34.95 |
| mouse controls, 2.3 | neato, 2.34.160.7 |
| file, 2.33.108.31 | neighbor joining, 2.33.63.38 |
| move, 2.33.70 | neighbors, 2.34.151 |
| alignment sequence, 2.33.70.7 | nested script, 5.8.2 |
| atoms, 2.33.87.3 | neural network, 2.33.52 |
| bonding, 2.33.70.3 | real array, 2.34.122 |
| column, 2.33.70.5 | nice, 2.36.39 |
| element, 2.33.70.4 | image, 3.2.2 |
| file, 2.21.28, 2.33.83.3 | non-redundant, 3.4.3 |
| fragments together, 2.33.70.3 | normal distribution, 2.34.121 |
| molecule, 2.33.70.1 | normalize chemicals, 2.33.68.4 |
| ms_molecule, 2.33.70.1 | defined, 2.34.168 |
| multiple molecules, 2.33.70.2 | nota, 1.5 |
| object, 2.33.70.2 | notational conventions, 1.5 |
| plane, 2.33.70.6 | nproc, 2.33.38 |
| sequence, 2.33.70.7 | nucleotides, 2.21.24 |
| table column, 2.33.70.5 | number, 2.18.18 |
| movie, 2.33.92.3 | of dots, 2.23.5.55 |
| images by frame, 3.9.2.2 | elements, 2.34.102 |
| molecular simulation, 3.9.2 | hydrogen bonds, 2.33.88.23 |
| rotate view, 3.9.1 | molecules in objects, 2.34.137.4 |
| zooming, 3.9.1 | occurrences, 2.34.102 |
| moving selection to another object, 2.34.137.8 | residues in molecules, 2.34.137.4 |
| mpeg, 2.33.108.31 | van der Waals contacts, 2.33.88.13 |
| ms_, 2.8.6 | transfer from sequence, 2.33.3.2 |
| multi center drestraint, 2.22.6 | nvis, 2.34.66.6 |
| multi-part molecule, 2.33.18.2 | object, 2.33.13.1, 5.7.1 |
| multicore, 2.34.70.1 | in table, 2.34.109 |
| multiline input, 2.33.82.5 | parray, 5.7.3.1 |
| multiple NMR models, 2.23.14.5 | properties, 2.33.87.34 |
| alignment, 2.33.3.3 | stack, 5.8.9 |
| to pairwise similarities, 2.36.7 | to chemarray, 2.34.27 |
| conformation storage, 5.8.9 | user fields, 2.34.54.1 |
| conformations, 2.33.61.1, 2.33.92.1 | assign comment, 2.33.87.17 |
| mol as text, 2.34.156.3 | source file, 2.34.55 |
| object file, 2.33.82.2 | translate, 2.33.101 |
| sequence alignment intro, 1.4.3.4 | merge, 3.8.6 |
| smiles file format, 2.33.82.46 | selecting, 2.8.5 |
| multiprocessor, 2.33.38 | obsolete, 2.19.54 |
| mutate residue, 2.33.66 | occlusion shading, 2.33.13 |
| mutating residue, 3.8.5 | octanol transfer, 2.34.114 |
| format, 5.5.3 | pattern, 5.7.4 |
| oligonucleotide melting, 2.34.164 | search, 2.33.35.2 |
| on-line help, 2.33.45.1, 2.33.45.2 | pause, 2.33.71 |
| third, 2.34.37 | pdb, 5.6.10, 5.7.6 |
| only, 5.7.2 | file creation time, 2.34.38 |
| ontology, 2.34.44.6 | files, 2.37.28 |
| openGL window, 2.33.103 | format, 2.33.82.48 |
| operating system, 2.33.22.9, 2.33.97, 2.34.188, 5.10.2 | merge, 3.4.4 |
| optimal chemical superposition, 3.14.5.1 | sequence generation, 3.4.3 |
| optimization, 2.33.69 | pdbDirStyle, 2.22.18 |
| Hbond, 2.36.91 | peptide, 5.7.7 |
| hydrogen bond, 2.36.91 | docking, 3.12.5 |
| optimizeHbonds, 2.36.91 | folding, 1.4.2.1 |
| or, 2.14.3 | intro, 1.4.2.1 |
| order, 2.33.3.1, 2.33.70.7 | personal gui controls, 3.1.2 |
| original sequence names, 2.23.12.15 | setup, 3.1.2 |
| os_, 2.8.5 | ph30, 3.12 |
| other variables, 2.24 | ph4, 5.7.8 |
| out-of density atoms, 2.33.88.21 | object faq, 3.6.1 |
| output, 2.18.3 | pharmacophore, 2.33.12, 3.5, 5.7.8 |
| outside penalty, 2.23.6.1 | faq, 3.6 |
| overlap, 2.34.70.10 | grid type definitions, 2.33.87.73 |
| by atom pairs, 2.33.95 | object, 3.6.1 |
| chemical substructure, 2.36.22 | objects, 3.6 |
| overview, 1.4 | pharmacophores, 3.6 |
| pK shift, 3.7.3 | psi plot, 2.36.58 |
| pKa, 2.33.22.20, 2.33.87.11, 2.33.87.12 | pipe, 2.33.82.43 |
| model, 2.33.87.12 | placeLigand, 2.36.50 |
| packing density, 3.3.8 | planar angle, 2.33.63.18 |
| pair-distances, 2.33.22.6 | plot, 2.33.72 |
| pairdistance parray, 2.23.5.24 | 3D 2Dfunction, 3.12.3 |
| pairwise interactions, 2.33.87.51 | shape, 3.12.4 |
| panel layout, 2.23.8.6 | area, 2.33.73 |
| paragraphs, 2.33.108.24 | grid line width, 2.23.12.5 |
| parallel, 2.18.18 | histogram, 3.12.2 |
| computing, 2.34.70.1 | how to, 3.12 |
| processing, 2.33.38 | simple, 3.12.1 |
| parallelization, 2.34.70.1 | plot2DSeq, 2.36.51 |
| parameter list file, 3.14.6.2 | plotBestEnergies, 2.36.54 |
| parray, 2.33.22.6, 5.7.3 | plotCluster, 2.36.56 |
| parrayTo3D, 2.36.83 | plotFlexibility, 2.36.55 |
| parrayToMol, 2.36.82 | plotMatrix, 2.36.57 |
| parse SOAP message, 2.34.186 | plotRama, 2.36.58 |
| parsing, 2.34.89 | plotRose, 2.36.59 |
| web pages, 2.33.82.47 | plotSeqDotMatrix, 2.36.52 |
| partial least squares, 2.33.51 | plotSeqDotMatrix2, 2.36.53 |
| slide display, 2.33.23.21 | plotSeqProperty, 2.36.60 |
| sum, 2.34.77 | 3d, 1.4.3.7 |
| passing arguments, 5.8.2 | plotting van der Waals, 3.7.1 |
| by reference, 2.33.62 | faq, 3.7.1 |
| column contributions, 2.34.160.8, 2.34.160.9 | project setup, 3.13.2.2 |
| model, 2.34.160.8, 2.34.160.9 | projected alignment, 2.34.99.3 |
| weights, 2.34.160.8, 2.34.160.9 | projecting surface charge, 3.7.2 |
| pmf, 2.22.16 | property, 2.33.87.52, 2.33.87.53, 2.33.87.54 |
| residue profile, 2.36.23 | grids, 2.19.20 |
| pmf-file, 2.37.19 | map, 2.33.87.73 |
| pmffile, 2.37.19 | superposition, 2.33.87.73 |
| png, 2.33.108.36, 5.7.5 | prosite, 5.7.10 |
| pocket, 2.36.28, 2.36.89, 3.13.1.1 | pattern, 5.7.4 |
| point coordinates, 2.34.192.1 | protein docking, 2.34.192.3 |
| size, 2.23.5.21 | intro, 1.4.2.5 |
| pointer array, 5.7.3 | engineering, 2.24.9 |
| polar hydrogens, 2.23.5.32 | grid docking, 3.14.2 |
| surface area, 2.34.114 | health, 2.36.58 |
| polarization charge, 3.7.2, 5.7.13 | topology, 2.23.5.42 |
| positional constraint, 2.23.14.12 | protonation states table, 2.34.160.11 |
| postscript, 2.21.23 | psa, 5.7.12 |
| potential surface, 2.23.14.6 | purple box, 2.34.21 |
| coloring, 5.7.13 | quadratic equation, 2.34.147 |
| pov-ray, 2.33.108.38 | quantum mechanics, 2.33.82.21, 2.33.108.17 |
| pow, 2.34.37 | qubic equation, 2.34.148 |
| precision, 2.34.136.4 | query, 3.14.6.1 |
| predict, 2.33.74 | molcart, 2.33.79 |
| predictSeq, 2.36.61 | question mark operator, 2.34.156.7 |
| prediction model, 2.34.84 | quit, 2.33.80 |
| quality, 2.34.136 | property transfer via alignment, 2.34.122.3 |
| score, 2.34.136 | r_2out, 2.19.34 |
| predictive models, 2.33.51.2 | r_out, 2.19.33 |
| preference, 2.22 | radii.electrostatic, 2.34.120 |
| system, 2.22.1 | van der Waals, 2.34.120 |
| preferences, 3.1.2.3 | rainbow, 2.34.29.1 |
| prepSwiss, 2.36.62 | ramachandran faq, 3.3.3 |
| previous atom, 2.34.101.1 | how to, 3.3.3 |
| principal axes, 2.34.163 | random array, 2.34.121 |
| component analysis, 3.3.9 | order, 2.34.139 |
| inertia moments, 2.34.88 | sequence, 2.33.63.36 |
| print, 2.33.75 | randomSeed, 2.18.19 |
| bar, 2.33.76 | randomize, 2.18.19, 2.33.81 |
| image, 2.33.78 | angles, 2.33.81.1 |
| to string, 2.33.91 | coordinates, 2.33.81 |
| printMatrix, 2.36.63 | torsions, 2.33.81 |
| printPostScript, 2.36.64 | rarray, 2.33.22.6, 2.34.56.1, 2.34.70.8, 2.34.122.2, 5.7.11 |
| printTorsions, 2.36.65 | properties, 2.34.122.4 |
| printf, 2.33.77 | rdBlastOutput, 2.36.68 |
| problem, 3.14.6.2 | rdSeqTab, 2.36.69 |
| processors, 2.18.18 | reaction, 2.33.63.33 |
| profile, 5.7.9 | group file, 2.33.53 |
| program overview, 1.4 | read, 2.33.82, 2.33.82.56, 2.33.82.57 |
| progress bar, 2.33.76 | FILTER, 2.33.82.6 |
| progression, 2.33.76 | alignment, 2.33.82.12 |
| binary, 2.33.82.2 | csv, 2.33.82.44 |
| blob, 2.33.82.38 | html, 2.33.82.47 |
| color, 2.33.82.13 | mmcif, 2.33.82.48 |
| column, 2.33.82.51 | mol, 2.33.82.50 |
| comp_matrix, 2.33.82.14 | mol2, 2.33.82.49 |
| conf, 2.33.82.15 | text, 2.33.82.40 |
| csd, 2.33.82.16 | trajectory, 2.33.82.31 |
| csv, 2.33.82.44 | and save a fragment, 2.33.82.31.1 |
| database, 2.33.82.17 | write, 2.33.82.31.1 |
| drestraint, 2.33.82.18 | unix, 2.33.82.10 |
| type, 2.33.82.19 | cat, 2.33.82.11 |
| entries from database, 2.33.82.8 | variable, 2.33.82.52 |
| factor, 2.33.82.20 | view, 2.33.82.53 |
| file by chunk, 2.33.82.40 | vrestraint, 2.33.82.54 |
| from file, 2.33.82.1 | type, 2.33.82.55 |
| string, 2.33.82.5 | with filter, 2.33.82.6 |
| fromstring, 2.33.82.5 | xml, 2.33.82.56 |
| ftp http, 2.33.82.9 | readMolNames, 2.24.11 |
| gamess, 2.33.82.21 | readcomp_matrix, 2.33.82.14 |
| grob, 2.33.82.22 | reading external tool output, 2.33.63.1 |
| gui, 2.33.82.3 | from standard input, 2.33.82.43 |
| html, 2.33.82.4 | pdb from ftp, 2.21.18 |
| file, 2.33.82.4 | web, 2.21.19 |
| iarray, 2.33.82.23 | restraint, 2.33.82.54 |
| index, 2.33.82.24 | real, 5.7.14 |
| table, 2.33.82.8 | array, 5.7.11 |
| json, 2.33.82.57 | shell variables, 2.19 |
| library, 2.33.82.25 | space refinement, 2.33.63.31 |
| mmff, 2.33.82.26 | reals, 2.19 |
| librarymmff, 2.33.82.26 | rebel, 2.18.5, 2.23.14.6, 5.7.13 |
| map, 2.33.82.27 | rebuild molcart index, 2.33.7.10 |
| matrix, 2.33.82.28 | recalculate dependent values, 2.33.7.2 |
| menu file, 2.33.82.3 | values, 2.33.1.1.1 |
| mol, 2.20.13, 2.33.82.8, 2.33.82.29 | receptor, 3.13.1.1 |
| mol2, 2.33.82.8, 2.33.82.30 | preparation, 3.13.1.1 |
| object, 2.33.82.32 | redefine hydrogen coordinates, 2.33.87.25 |
| parray, 2.33.82.32.1 | references, 4 |
| pdb, 2.23.14.4, 2.23.14.5, 2.33.82.2, 2.33.82.33 | refineModel, 2.36.66 |
| sequence, 2.33.82.34 | reflections, 2.23.5.33 |
| profile, 2.33.82.35 | refresh view, 2.33.23.2 |
| prosite, 2.33.82.36 | refs, 4.1 |
| rarray, 2.33.82.37 | regexp, 2.10, 2.34.89 |
| sarray, 2.33.82.39, 2.33.82.40 | back references, 2.10.1.3 |
| sequence, 2.33.82.8, 2.33.82.41 | syntax, 2.10.1 |
| database, 2.33.82.41.1 | regression, 2.33.51 |
| smiles, 2.33.82.46 | regul, 2.36.67 |
| stack, 2.33.82.42 | regular expression, 2.10, 2.34.70.4, 2.34.89 |
| string, 2.33.82.43 | filter, 2.33.82.1 |
| table, 2.33.82.44 | expression, 2.34.126.3 |
| chunk, 2.33.82.45 | regularization, 2.18.8, 2.33.64.4, 5.7.15 |
| rejectAction, 2.22.19 | selection, 2.20.21 |
| relational database, 2.34.149 | as string, 2.34.156.8 |
| relative accessible area of atoms, 2.22.2 | function, 2.34.127 |
| release notes, 1.1 | table, 3.14.4.1 |
| remarkObj, 2.36.70 | tethering, 2.33.87.68, 2.33.87.69 |
| remove columns, 2.33.22.16 | user field, 2.34.54.1 |
| expression tags, 2.34.180 | residue_selections, 2.8.11 |
| file, 2.33.22.9 | selecting, 2.8.7 |
| trailing blanks, 2.34.178 | resizing, 2.34.68 |
| removing html tags, 2.33.82.47 | resorting nodes edges, 2.34.160.7 |
| outliers, 2.34.178 | restore, 3.14.6.2 |
| rename, 2.33.3.1, 2.33.83 | defaults, 2.33.83.4 |
| chemicals, 2.33.87.47 | preference, 2.33.83.4 |
| column table, 2.33.83.1 | restraining molecules to shapes, 2.23.14.12 |
| file, 2.33.83.3 | restraints, 2.17, 2.33.87.68, 2.33.87.69 |
| molcart, 2.33.83.2 | torsion, 2.33.87.81 |
| system, 2.33.83.3 | return, 2.33.84 |
| renaming, 2.23.12.15 | reverse complement, 2.34.138.1 |
| reorder, 2.33.70.7 | lighting, 2.33.87.42 |
| alignment sequences, 2.33.108.1 | normals, 2.33.87.42 |
| array, 2.34.139 | reversing order, 2.34.66.2 |
| columns by function, 2.33.89.3 | rgb, 2.34.90.4, 5.7.17 |
| objects, 2.33.89.4 | matrix, 2.34.29 |
| replace matching array element, 2.34.126.1 | ribbon, 5.7.18 |
| without interpretation, 2.34.126.2 | bullets, 2.23.5.7 |
| replacing scaffold in a library, 2.33.68.1 | diagram, 2.23.5.42, 2.23.5.43 |
| reproducible randomness, 2.18.19 | ribbonColorStyle, 2.22.21 |
| reroot, 2.33.18.4 | ribbonStyle, 2.22.22 |
| selections, 3.3.6 | right join, 2.33.50 |
| resLabelShift, 2.19.35 | rigid chemical superposition, 2.33.95 |
| resLabelStyle, 2.22.20 | ring, 2.34.130 |
| reserved names, 2.24 | center coordinates, 2.34.192.2 |
| residue, 2.33.13.1, 5.7.16 | sampling, 3.16 |
| accumulators, 2.34.63 | templates, 2.33.87.8 |
| alignment, 2.33.87.68, 2.33.87.69 | rm, 2.33.22.9 |
| conservation, 2.34.122.5 | rocking, 2.33.23.5 |
| contact area matrix, 2.34.90.8 | root mean square deviation, 2.34.136.4 |
| areas, 2.34.7.1 | roots, 2.34.147, 2.34.148 |
| field, 2.33.87.34 | rotate, 2.33.85 |
| gap, 2.23.5.7, 2.23.5.8 | grob, 2.33.85.2 |
| label, 2.19.35, 2.33.3.2 | object, 2.33.85.1 |
| library file, 2.37.20 | view, 2.33.85.3 |
| name, 2.34.79 | rotation, 2.33.23.5 |
| translation, 2.23.14.14 | angle, 2.34.17 |
| number, 2.34.66.5 | rounding, 2.34.122 |
| table, 2.34.160.3 | a real, 2.34.156 |
| property averaging, 2.34.146.3 | output, 2.33.88.45 |
| calculation, 2.34.63 | rsWeight, 2.19.36 |
| proximity, 2.34.90.8 | rs_, 2.8.7 |
| ranges, 2.8.11 | ruler, 2.19.10 |
| running a docking job, 3.13.2.5 | scaffolds, 2.33.53 |
| dock job, 3.13.2.4 | scoring, 3.13.1.4 |
| script from html, 5.8.2 | screen X, 2.34.190 |
| s-s bond, 5.4.5 | coordinates, 2.34.190 |
| s_alignment_rainbow, 2.21.1 | script, 2.34.99.4, 5.8.2 |
| s_blastdbDir, 2.21.2 | file name, 2.34.55 |
| s_editor, 2.21.3 | inside ICM, 5.8.2 |
| s_entryDelimiter, 2.21.4 | name, 5.8.2 |
| s_errorFormat, 2.21.5 | image generation, 2.33.23.3 |
| s_fieldDelimiter, 2.21.6 | scripting molecular movements, 3.2.4 |
| s_helpEngine, 2.21.7 | sdf, 2.23.14.7, 2.33.108.24, 5.6.11 |
| s_icmPrompt, 2.21.10 | file, 2.33.82.49, 2.33.82.50, 2.33.87.47, 2.33.108.11, 2.34.156.3, 5.7.3 |
| s_icmhome, 2.21.8, 3.1.2.1 | to chem-table, 2.34.109 |
| s_imageViewer, 2.21.11 | search for chemical pattern, 2.34.56.3 |
| s_inxDir, 2.21.9 | pdb headers, 3.4.5 |
| s_javaCodeBase, 2.21.12 | prosite, 3.4.1 |
| s_labelHeader, 2.21.13 | sequence pattern, 2.33.35.8 |
| s_lib, 2.21.14 | searchObjSegment, 2.36.73 |
| s_logDir, 2.21.15 | searchPatternDb, 2.36.71 |
| s_out, 2.21.16 | searchPatternPdb, 2.36.72 |
| s_pdbDir, 2.21.17 | searchSeqDb, 2.36.74 |
| s_pdbDirFtp, 2.21.18 | searchSeqFullPdb, 2.36.76 |
| s_pdbDirWeb, 2.21.19 | searchSeqPdb, 2.36.75 |
| s_printCommand, 2.21.21 | searchSeqProsite, 2.36.77 |
| s_projectDir, 2.21.20 | searchSeqSwiss, 2.36.78 |
| s_prositeDat, 2.21.22 | searches and alignments, 3.4 |
| s_psViewer, 2.21.23 | second moments, 2.34.163 |
| s_reslib, 2.21.24 | secondary structure derivation from 3D, 2.33.5.1 |
| s_skipMessages, 2.21.25 | schematic, 2.23.5.42 |
| s_sysCp, 2.21.26 | segMinLength, 2.18.20 |
| s_sysLs, 2.21.27 | segment, 5.8.4 |
| s_sysMv, 2.21.28 | select, 2.33.86 |
| s_sysRm, 2.21.29 | atoms by number of bonded atoms, 2.34.137.3 |
| s_tempDir, 2.21.30 | of the fixed torsions, 2.34.137.2 |
| s_translateString, 2.21.31 | based on alignment, 2.34.137.14 |
| s_userDir, 2.21.32 | bfactor, 2.34.137.7 |
| s_usrlib, 2.21.33 | center of mass, 2.34.137.15 |
| s_webEntrezLink, 2.21.34 | coordinates, 2.34.137.7 |
| s_webViewer, 2.21.35 | iarray, 2.34.137 |
| s_xpdbDir, 2.21.36 | length, 2.34.137.13 |
| sa23, 3.3 | occupancy, 2.34.137.7 |
| sampling grid, 2.34.192.3 | user field, 2.34.137.7 |
| sarray, 2.33.22.6, 5.8.1 | chemical, 2.33.86.1 |
| transformation in place, 2.33.100.1 | column table, 2.33.86.2 |
| save preferences, 2.33.108.42 | lines, 2.33.82.1 |
| print, 3.2.6 | tether partners, 2.34.137.12 |
| sdf file, 2.33.108.11 | vw partners, 2.34.137.12 |
| saving graphics to album, 2.33.63.20 | selectMinGrad, 2.19.37 |
| image, 2.33.108.36 | selectSphereRadius, 2.19.38 |
| scaffold, 2.34.178 | selected stack conformations, 2.33.22.17 |
| y z, 2.34.137 | redundancy removal, 2.33.43.2 |
| columns, 5.9.1 | search, 2.33.35.2 |
| from clusters, 3.14.6.4 | selection, 2.33.22.23 |
| neighboring elements, 2.34.101 | structure alignment, 2.35.1 |
| residues, 3.3.6 | to alignment transfer, 2.34.122.3 |
| saving, 2.34.66.4 | type, 5.8.3 |
| selection, 2.8, 2.34.137, 2.34.137.6 | sequence-alignment mapping, 2.34.156.5, 2.34.156.6 |
| elements, 2.8.4 | sequence-structure alignment, 2.34.5.1 |
| examples, 2.8.3 | output format, 2.18.21, 2.18.22 |
| functions, 2.8.10 | sequenceBlock, 2.18.21 |
| gap patching, 2.34.137, 2.34.137.11 | sequenceColorScheme, 2.22.23 |
| level, 2.8, 2.34.182 | sequenceLine, 2.18.22 |
| levels, 2.8.2 | sequences, 3.4 |
| simplification, 2.34.137.11 | not in alignments, 2.33.22.23 |
| transfer, 2.34.137, 2.34.156.8 | set, 2.33.87 |
| type, 2.8 | alternative atom, 2.33.87.18 |
| types, 2.8.1 | area, 2.33.87.1 |
| variable, 2.24.12 | atom, 2.33.87.3 |
| atoms, 2.8.8 | ball label, 2.33.87.2 |
| functions, 2.8.10 | background image, 2.33.87.4 |
| molecules, 2.8.6 | bfactor, 2.33.87.5 |
| objects, 2.8.5 | biological symmetry, 2.33.87.64 |
| output, 2.24.15 | bond topology, 2.33.87.7 |
| residues, 2.8.7 | type, 2.33.87.6 |
| torsions, 2.8.9 | and formal charges, 2.33.87.7 |
| variables, 2.8.9 | cartesian, 2.33.87.8 |
| selections, 2.33.87.34 | chain, 2.33.87.9 |
| in molecular objects, 2.8 | charge, 2.33.87.10 |
| selftether, 2.23.14.12, 5.9.4 | formal, 2.33.87.11 |
| seq_ali_project, 2.34.156.6 | auto, 2.33.87.12 |
| sequence, 2.34.172, 2.34.173, 5.8.3 | mmff, 2.33.87.13 |
| alignment, 2.34.5.1, 2.36.1 | chargemmff, 2.33.87.13 |
| intro, 1.4.3.3 | chiral, 2.33.87.14 |
| analysis intro, 1.4.3 | chemical, 2.33.87.15 |
| assembly, 2.33.43.2 | color, 2.33.87.16 |
| belongs to alignment, 2.34.70 | comment, 2.33.87.17, 2.33.87.18 |
| conservation, 2.34.136.7 | sequence, 2.33.87.19 |
| distance, 2.34.137 | comp_matrix, 2.33.87.20 |
| matrix from alignment, 2.34.90.9 | current map, 2.33.87.45 |
| dotplot, 1.4.3.2 | object, 2.33.87.48 |
| from alignment, 2.33.22.23 | directory, 2.33.87.21 |
| pdb, 2.33.63.35 | drestraint, 2.33.87.22 |
| identity, 2.36.7, 2.36.8 | type, 2.33.87.23 |
| intro, 1.4.3 | electrostatic radii, 2.33.87.79 |
| modification, 2.34.180 | error, 2.33.87.33 |
| neighbor, 2.34.99.3 | field, 2.33.87.34 |
| parray, 5.7.3.2 | alignment, 2.33.87.35 |
| pattern, 5.7.4 | map, 2.33.87.36 |
| position correspondence, 2.34.160.3 | name, 2.33.87.37 |
| positional weights, 2.33.87.1 | font, 2.33.87.38 |
| foreground, 2.33.87.40 | table, 2.33.87.66 |
| format, 2.33.87.41 | tautomer, 2.33.87.31 |
| grob, 2.33.87.42 | terms, 2.33.87.67 |
| coordinates, 2.33.87.42 | tether, 2.33.87.69 |
| label, 2.33.87.42 | append, 2.33.87.70 |
| group, 2.33.87.63 | texture, 2.33.87.32 |
| column, 2.33.87.24 | type, 2.33.87.71 |
| hydrogen, 2.33.87.25 | mmff, 2.33.87.77 |
| key, 2.33.87.43 | molecule, 2.33.87.75 |
| label, 2.33.87.44 | object, 2.33.87.74 |
| 3d label, 2.33.87.44.4 | property, 2.33.87.73 |
| chemical, 2.33.87.44.3 | sequence, 2.33.87.76 |
| distance, 2.33.87.44.1 | surface, 2.33.87.72 |
| table, 2.33.87.44.2 | variable grid, 2.33.87.84 |
| map, 2.33.87.45 | variablegrid, 2.33.87.84 |
| molcart, 2.33.87.46 | view, 2.33.87.80 |
| molecular variables, 2.33.87.83 | vrestraint, 2.33.87.81 |
| name, 2.33.87.47 | vrestraintvs_var, 2.33.87.82 |
| sequence, 2.33.87.47.1 | radii, 2.33.87.78 |
| object, 2.33.87.48 | vwelradii, 2.33.87.79 |
| occupancy, 2.33.87.49 | vwradii, 2.33.87.78 |
| plane, 2.33.87.50 | window, 2.33.87.85 |
| pmf, 2.33.87.51 | xstick, 2.33.87.86 |
| property, 2.33.87.52, 2.33.87.54, 2.33.87.55 | radii, 2.33.87.86 |
| alignment, 2.33.87.55 | setResLabel, 2.36.80 |
| chemical view, 2.33.87.54 | setcomp_matrix, 2.33.87.20 |
| column, 2.33.87.53 | seticmff, 2.36.79 |
| radii graphical, 2.33.87.86 | setting conf properties, 2.33.87.61 |
| randomSeed, 2.33.87.56 | setvs_var, 2.33.87.83 |
| randomize, 2.33.87.56 | sf-term, 2.33.87.72 |
| resolution, 2.33.87.57 | sfWeight, 2.19.39 |
| selftether, 2.33.87.68 | sh24, 3.4 |
| similarity, 2.34.44.8, 2.34.136.2 | shadows, 2.23.5.34 |
| site, 2.33.87.26 | shell, 3.1, 5.8.5 |
| alignment, 2.33.87.27 | functions, 2.33.40 |
| residue, 2.33.87.29 | intro, 1.7.1 |
| slide, 2.33.87.30 | progression, 2.33.76 |
| sstructure backbone, 2.33.87.59 | warning message, 2.34.191 |
| sequence, 2.33.87.60 | shineStyle, 2.22.24 |
| to sequence, 2.33.87.60 | shininess, 2.19.40 |
| stack, 2.33.87.61 | show, 2.33.88, 2.33.88.39 |
| energy, 2.33.87.61, 2.33.92.1 | alias, 2.33.88.7 |
| stereo, 2.33.87.58 | aliases, 2.33.88.7 |
| swiss, 2.33.87.62 | alignment, 2.33.88.8 |
| name, 2.33.87.62 | area, 2.33.88.9 |
| symmetry, 2.33.87.65 | atom, 2.33.88.10 |
| bio, 2.33.87.64 | type, 2.33.88.11 |
| crystal, 2.33.87.63 | atoms, 2.33.88.10 |
| group, 2.33.87.63 | bond, 2.33.88.12 |
| to a torsion, 2.33.87.65 | clash, 2.33.88.13 |
| column, 2.33.88.15 | vrestraints, 2.33.88.49 |
| comp_matrix, 2.33.88.16 | showcomp_matrix, 2.33.88.16 |
| database, 2.33.88.17 | showing weak hydrogen bonds, 2.23.5.25 |
| drestraint, 2.33.88.18 | side chain, 2.36.90 |
| type, 2.33.88.19 | flexibility, 2.36.90 |
| energy, 2.33.88.20 | sigma function, 2.34.44.8, 2.34.136.2 |
| atom, 2.33.88.21 | level, 2.23.7.5 |
| gradient, 2.33.88.22 | signal recognition measure, 2.36.21 |
| hbond, 2.33.88.23 | similar chains, 2.34.137.13 |
| exact, 2.33.88.24 | similarity, 2.33.35.9, 2.33.35.10 |
| hbondexact, 2.33.88.24 | simple expressions, 2.10.1.1 |
| html, 2.33.88.25 | string substitution, 2.34.126.2 |
| iarray, 2.33.88.26 | simplified representation, 2.23.5.16 |
| integer, 2.33.88.27 | compound, 2.34.179 |
| key, 2.33.88.4 | mesh structure, 2.33.15.2 |
| label, 2.33.88.28 | simulation duration, 2.19.47 |
| library, 2.33.88.29 | temperature, 2.19.46 |
| link, 2.33.88.30 | intro, 1.4.2 |
| logical, 2.33.88.31 | sinking number, 2.19.35 |
| map, 2.33.88.5 | site, 2.33.11.2, 5.8.6 |
| mol, 2.33.88.32 | arrows, 2.33.87.26 |
| mol2, 2.33.88.33 | table, 5.8.6.1 |
| molecule, 2.33.88.34 | sites, 2.33.22.26 |
| molecules, 2.33.88.6 | by residue selection, 2.33.22.24 |
| object, 2.33.88.35 | sequences, 5.8.6.1 |
| pdb, 2.33.88.36 | sixthe power, 2.22.6 |
| pharmacophore type, 2.33.88.53 | skin, 2.19.35, 5.8.7 |
| pmf, 2.33.88.37 | intro, 1.4.1.2 |
| preferences, 2.33.88.38 | slide, 2.33.1.3, 2.34.144, 5.8.14 |
| profile, 2.33.88.39 | transition time, 2.33.23.21 |
| residue, 2.33.88.40 | slides, 2.34.190 |
| type, 2.33.88.41 | slideshow, 2.33.1.3, 2.33.23.21, 2.34.144 |
| residuetype, 2.33.88.41 | sln, 5.8.8 |
| segment, 2.33.88.42 | smallest set of smallest rings, 2.34.130 |
| selftether, 2.33.88.1 | smart, 2.23.14.7 |
| sequence, 2.33.88.43 | smarts, 2.34.70.2 |
| shell variable, 2.33.88.3 | smiles, 2.23.14.7, 2.26 |
| site, 2.33.88.2 | to chem-table element, 2.34.109 |
| stack, 2.33.88.44 | smooth alignment, 2.34.146.4 |
| svariable, 2.33.88.3 | interpolation, 2.33.92.3 |
| table, 2.33.88.45 | map, 2.34.146.5 |
| as database, 2.33.88.17 | rarray, 2.34.146.1 |
| term, 2.33.88.46 | surface, 2.36.88 |
| tethers, 2.33.88.47 | soap, 2.31 |
| version, 2.33.88.48 | soft trim, 2.34.178 |
| volume, 2.33.88.51 | solid sphere, 2.23.5.11 |
| map, 2.33.88.52 | solubility, 2.34.114 |
| volumemap, 2.33.88.52 | solvation, 2.22.25, 2.23.14.2 |
| vrestraint, 2.33.88.49 | energy, 2.19.39, 2.22.25 |
| type, 2.33.88.50 | solvent accessible area, 2.18.23 |
| sort, 2.33.89, 2.33.89.4 | chemical, 2.33.68 |
| array, 2.33.89.1 | startup, 3.1.2.3 |
| arrays, 2.33.89.1 | static RMSD, 2.34.155 |
| column, 2.33.89.3 | and dynamic hbonds, 2.23.5.24 |
| table, 2.33.89.3 | statistical thermodynamics, 2.34.47 |
| molecules, 2.33.89.5 | stereo, 2.23.5.52, 2.33.30, 2.33.87.58 |
| object, 2.33.89.4 | reconstruction, 3.8.9 |
| stack, 2.33.89.6 | stereo-specific hydrogens, 2.33.22.11 |
| table, 2.33.89.2 | stereoisomer, 2.33.30 |
| sortSeqByLength, 2.36.81 | stereoisomers, 2.20.16 |
| space group, 2.33.67 | stick, 5.8.10 |
| transformations, 2.34.176 | store, 2.33.92 |
| sparse atoms, 2.23.14.3 | conf, 2.33.92, 2.33.92.1 |
| spawn background job, 2.33.63.1 | frame, 2.33.92.3 |
| special values, 2.34.168 | image, 2.33.63.20 |
| specificity, 2.34.136.4 | stack object, 2.33.92.2 |
| spectral decomposition, 2.34.45 | torsion type, 2.33.92 |
| split, 2.33.90 | strength of hydrogen bond, 2.33.23.14 |
| column values, 2.33.90.5 | string, 5.8.11 |
| grob, 2.33.90.1 | array, 2.34.135, 5.8.1 |
| group, 2.33.90.2 | filtering, 2.34.178 |
| array, 2.33.90.3 | inversion, 2.34.156.1 |
| molsar, 2.33.63.28 | label, 2.33.23.12 |
| object, 2.33.90.6 | matching, 2.10, 2.34.89 |
| to molecules, 2.33.90.6 | variables, 2.21 |
| sequence, 2.33.90.4 | strings, 2.21 |
| table cell, 2.33.90.5 | strip, 2.33.94 |
| tree, 2.33.90.7 | struct, 2.34.99.2 |
| splitting selection, 2.8.11 | structural alignment, 2.33.3.5, 2.34.5.2 |
| spreadsheet, 2.33.82.44 | optimization, 2.33.35.1 |
| sprintf, 2.33.91 | superposition, 2.33.3.5 |
| sql, 2.33.79, 2.33.87.46, 2.34.50.1, 2.34.99.12, 2.34.102.5, 2.34.182.2 | analysis, 3.3 |
| sqlite, 3.5.1 | comparison, 2.34.23.2 |
| sqrt, 2.34.37 | factors, 3.11.1 |
| square matrix to element pairs, 2.34.160.5 | structure, 3.11.1 |
| ssThreshold, 2.19.41 | sub-alignment to selection, 2.34.128 |
| ssWeight, 2.19.42 | sub-matrix, 2.34.90.2 |
| ssbond, 5.4.5 | subalignment, 2.34.5.3, 5.1.1 |
| ssearch, 2.18.17, 2.33.93 | submap, 2.34.86 |
| ssearchStep, 2.19.43 | subroutine, 2.33.62 |
| ssign sstructure segment, 2.33.5.2 | subset, 2.6 |
| stack, 2.18.12, 2.18.13, 2.18.15, 2.22.7, 2.33.87.61, 2.33.92, 2.33.92.1, 2.34.66.6, 2.34.160.6, 5.3.12, 5.8.9 | substring, 2.34.89, 2.34.156, 2.34.156.1 |
| bin size, 2.33.14 | substructure, 2.33.35.9, 2.33.35.10 |
| cleaning, 2.33.22.17 | search, 2.33.35.4 |
| extension, 2.33.4.2 | superimpose, 2.23.14, 2.33.95 |
| multiplication, 2.33.4.2 | faq, 3.3.1 |
| merge, 3.7.7 | how to, 3.3.1 |
| standard chemical form, 2.33.68.4 | minimize, 2.33.96 |
| deviation, 2.34.133 | support, 1.3 |
| standardization, 2.33.22.11 | suppressing view changes, 2.33.23.21 |
| accessibility, 2.33.88.9 | selected row numbers, 2.34.70 |
| area, 2.36.2, 5.8.15 | subset, 5.9.2.2 |
| charge, 5.7.13 | show html, 2.33.106.1 |
| color, 2.33.87.16 | targa, 5.9.3 |
| dot density, 2.23.5.55 | target coordinates, 5.9.4 |
| energy, 2.22.25, 2.33.87.72 | tautomer, 2.33.31 |
| mesh, 2.34.192.3 | tempCycle, 2.19.46 |
| point selection, 2.34.192 | tempLocal, 2.19.45 |
| term, 2.19.39 | temperature, 2.19.46 |
| surfaceAccuracy, 2.18.23 | variations in optimizer, 2.19.46 |
| surfaceMethod, 2.22.25 | template docking, 3.13.2.6 |
| surfaceTension, 2.19.44 | tensor product of two vectors, 2.34.90 |
| svariable, 5.8.12 | terminal font, 2.37.14 |
| map, 2.34.160.7 | window, 2.33.44 |
| swapping protein fragments, 3.8.7 | terms, 2.17 |
| swiss, 2.33.87.62 | hydrogen bonding, 2.19.21 |
| swissFields, 2.24.10 | test, 2.33.98 |
| swissprot, 2.33.87.26 | binary, 2.33.98.1 |
| symmetrization of a matrix, 2.34.90.3 | testing if argument exists, 2.34.59 |
| symmetry, 2.34.176 | tether, 2.23.14.12, 2.33.108.9, 5.9.4, 5.9.5 |
| faq, 3.10 | text, 2.34.89 |
| group, 2.18.2 | search in tables, 2.34.56.2 |
| problem, 2.33.67 | to script, 5.8.2 |
| syntax highlighting, 5.8.2 | texture, 5.5.3 |
| sys, 2.33.97 | tga, 5.9.3 |
| system, 5.10.2 | then, 2.33.99 |
| command, 2.33.97 | thickness, 2.23.9.14 |
| copy, 2.21.26 | thread to template, 2.33.64.4 |
| file move, 2.21.28 | threading, 2.34.5.1 |
| list file, 2.21.27 | letter code, 2.34.172, 2.34.173 |
| remove, 2.21.29 | thumbnails, 2.34.68 |
| table, 2.33.22.4, 2.33.87.52, 2.33.87.53, 2.33.87.54, 2.33.89.3, 5.9.1 | tif, 5.9.6 |
| actions, 5.9.2.4 | time, 2.34.38, 2.34.156.2 |
| column, 2.34.99 | timeLimit, 2.19.47 |
| format, 2.33.87.41 | tolFunc, 2.19.49 |
| plot, 2.33.63.32 | tolGrad, 2.19.48 |
| transformations, 2.34.104 | topological psa, 5.7.12 |
| creation, 2.33.43.3 | torScan, 2.36.84 |
| display style, 5.9.1 | torsion rmsd comparison, 2.33.14.2 |
| expression, 5.9.2 | scan, 2.36.84 |
| from matrix, 2.34.160.4 | torsions, 2.34.102.3 |
| grid view, 5.9.1 | score, 2.35.2 |
| of atoms and distances, 2.34.160.10 | tpsa, 5.7.12 |
| operations, 5.9.2.1 | trajectory, 2.33.61.2, 2.33.92, 2.33.92.3, 5.6.14 |
| plot, 5.9.2.3 | file, 2.37.17 |
| principal component analysis, 2.33.63.29 | frame writing, 2.33.23.17 |
| print, 2.33.88.45 | smoothing, 2.33.23.17 |
| row, 2.33.70.4 | transform, 2.33.100, 2.33.100.2 |
| label mark, 2.33.87.44.2 | general, 2.33.100 |
| mark, 2.34.79 | grob coordinates, 2.33.100.2 |
| sarray, 2.33.100.1 | update database, 2.33.68.5 |
| transformation, 2.34.122, 5.9.7 | speadsheet, 2.33.1.1.1 |
| vector, 5.9.7 | updates, 1.1 |
| and symmetry, 3.10 | updating atom pairs, 2.20.27 |
| transforming points, 2.34.192.5 | upper case, 2.34.171 |
| translate, 2.33.101 | url string parsing, 2.34.160 |
| transparency, 2.33.87.42, 5.5.3 | user atom display, 2.23.5.3 |
| background, 2.33.108.36 | commands, 2.33.82.3 |
| grob, 2.33.23.11 | defaults, 2.33.108.42 |
| grobs, 2.23.5.57 | environment, 3.1.2.2 |
| tree, 2.33.63.37, 2.34.99.5 | menu, 2.23.10.1 |
| cluster, 2.13 | menus, 2.32 |
| delete, 2.33.22.36 | user-defined properties, 2.33.87.34 |
| label format, 2.34.99.5 | solvation parameters, 2.34.7 |
| representatives, 2.13.1 | user_startup, 3.1.2.4 |
| trim string array, 2.33.100.1 | icm, 3.1.2 |
| trimming grid map values, 2.34.178 | guide, 3 |
| true positives, 2.34.136.4 | v_, 2.8.1 |
| truncate alignment, 2.33.63.34 | van der Waals surface, 2.23.5.56 |
| values, 2.34.178 | varLabelStyle, 2.22.27 |
| grob, 2.23.5.9, 2.23.5.10 | variable restraint, 2.33.87.81 |
| tsShapeData, 2.23.14.12 | selection, 2.8.9 |
| table format, 2.33.82.44 | vdW gap, 2.34.151 |
| two alignments, 2.34.44.13 | vector, 2.34.102.6 |
| dimensional plot, 2.34.146.2 | dot product, 2.34.187.1 |
| set comparison, 2.34.44.8, 2.34.136.2 | length, 2.34.103 |
| sets, 2.34.70.10 | product, 2.34.187.1 |
| txdoc browser, 2.33.82.4 | transformation, 2.34.104 |
| type, 2.34.182.1 | vertex, 2.33.13.4.2 |
| tzMethod, 2.22.26 | connectivity, 2.34.90.13 |
| tzWeight, 2.19.50 | vertexes, 2.33.13.4.2 |
| uncharge functional groups, 2.33.68.2 | vertical alignment block, 2.33.63.34 |
| unclip, 2.33.23.2 | workspace, 2.23.8.6 |
| underline, 2.33.87.38.1 | vertices, 2.33.13.4.2 |
| undisplay, 2.33.102 | vicinity, 2.19.51 |
| graphics, 2.33.103 | video, 2.33.108.31 |
| window, 2.33.103 | view, 2.23.5.9, 2.23.5.10, 2.33.87.55 |
| unfix, 2.33.104 | point, 2.34.190 |
| union, 2.34.70.10 | restoration, 2.34.73 |
| unique, 2.33.13.1, 5.10.1 | transition, 2.33.87.80 |
| atomic order, 2.33.63.39 | views, 5.8.14 |
| column values, 2.33.43.4 | virtual, 5.10.3 |
| names, 2.34.99 | arrays, 2.33.1.1.1 |
| new object name, 2.34.99 | chemistry, 2.33.68, 2.34.102.4 |
| smiles, 2.33.63.39 | field, 2.33.7.2 |
| unix, 2.33.97, 5.10.2 | ligand screening, 3.13, 3.13.1, 3.13.2, 3.13.3 |
| grep, 2.33.82.1 | intro, 1.4.2.7 |
| unlink alignments, 2.33.22.21 | visitsAction, 2.22.28 |
| sequences, 2.33.22.21 | vls, 3.13, 3.13.1, 3.13.2, 3.13.3 |
| variables, 2.33.22.21 | cluster, 3.13.3.6 |
| intro, 1.4.2.7 | database, 2.33.108.13 |
| job queueing, 3.13.3.6 | drestraint, 2.33.108.14 |
| overview, 3.13.1 | type, 2.33.108.15 |
| parallelization, 3.13.3.5 | factor, 2.33.108.16 |
| results, 3.13.3.8 | gamess, 2.33.108.17 |
| scores storage, 3.13.3.7 | grob, 2.33.108.18 |
| threshold, 3.13.3.2 | html, 2.33.108.19 |
| vls_intro, 3.13.3.1 | iarray, 2.33.108.3 |
| volume, 5.10.4 | image, 2.33.108.20 |
| vrestraint, 5.10.5 | alignment, 2.33.108.23 |
| file, 2.37.23 | chemical, 2.33.108.22 |
| type, 5.10.6 | parray, 2.33.108.21 |
| file, 2.37.22 | index, 2.33.82.24, 2.33.108.24 |
| vs_, 2.8.9 | blast, 2.33.108.25 |
| vs_out, 2.24.15 | fasta, 2.33.108.24 |
| vwCutoff, 2.19.52 | library, 2.33.108.26 |
| vwExpand, 2.19.53 | map, 2.33.108.27 |
| vwExpandDisplay, 2.19.54 | matrix, 2.33.108.6 |
| vwMethod, 2.22.29 | model, 2.33.108.28 |
| vwSoftMaxEnergy, 2.19.55 | mol, 2.33.108.29 |
| wait, 2.33.105 | mol2, 2.33.108.30 |
| warning, 2.23.14.3 | molcart, 2.33.108.7 |
| message, 2.34.191 | movie, 2.33.108.31 |
| suppression, 2.20.28 | object, 2.33.108.32 |
| water.dielectric constant, 2.19.15 | parray, 2.33.108.34 |
| waterRadius, 2.19.56 | simple, 2.33.108.33 |
| wavefront format, 2.33.63.11 | pdb, 2.23.14.14, 2.33.108.35 |
| web, 2.11, 2.33.106 | png, 2.33.108.36 |
| table, 2.33.106.1 | postscript, 2.33.108.37 |
| webEntrezOption, 2.22.30 | pov, 2.33.108.38 |
| weighted rmsd, 2.23.14 | povray, 2.33.108.38 |
| while, 2.33.107 | project, 2.33.108.2 |
| whole string, 2.34.126.1 | rarray, 2.33.108.4 |
| window averaging, 2.34.146.1 | sarray, 2.33.108.5 |
| layout, 2.34.156.9 | sequence, 2.33.108.39 |
| width and height, 2.34.190 | session, 2.33.108.40 |
| windowSize, 2.18.24 | several array, 2.33.108.8 |
| movie, 2.33.108.31 | simple object, 2.33.108.33 |
| wire, 5.10.7 | stack, 2.33.108.41 |
| wireBondSeparation, 2.19.57 | system preference, 2.33.108.42 |
| wireStyle, 2.22.31 | table, 2.33.108.10 |
| workspace, 2.33.103 | mol, 2.33.108.11 |
| write, 2.33.108 | with links, 2.33.108.19 |
| album, 2.33.108.21 | tether, 2.33.108.9 |
| alignment, 2.33.108.1 | tethers, 2.33.108.9 |
| array, 2.33.108.8 | trajectory, 2.33.23.17 |
| table, 2.33.108.8 | vs_var, 2.33.108.43 |
| binary, 2.33.108.2 | writevs_var, 2.33.108.43 |
| blast, 2.33.108.25 | x-ray crystallography, 2.33.88.21 |
| column, 2.33.108.12 | xml, 2.33.82.56, 2.34.89, 5.1.6 |
| xpdb, 2.33.82.2 | |
| xplor format, 2.33.82.27 | |
| xrMethod, 2.22.32 | |
| xrWeight, 2.19.58 | |
| xray density to rectangular energy map, 2.33.63.31 | |
| xstick, 5.10.8 | |
| radii, 2.33.87.2 | |
| xyz morphing, 3.8.8 | |
| zega, 5.10.9 | |
| intro, 1.4.3.6 | |
| |, 2.14.3 | |
|