Index

2D to 3D conversion, 80Vertex, 4
2d, 80.2abagyan, 1
2dto3d, 80.2about, 1
     chemicals, 75abstractsub, 5.3
3d, 80.2activeicm, 71, 71.1
ADME, 58, 67, 74     release notes, 71.1
AI, 52.8     user guide, 120
Abagyan, 2.3.9activeicmjs, 70
ActiveICM, 137activeicmjstech, 69
Bristol Myers Squibb, 4address, 2
DNA, 52alignments, 49, 52
E3 Ligase, 105amino acids, 54
Enamine, 52.6, 103andrew orry, 1
Estrogen Receptor, 80.6android, 72
Excel, 53animations, 2.3
Fullerton, 2.3.2annotation, 73
GINGER, 52.7apf, 52.2, 71.4, 71.5, 80.4, 80.5, 101, 104
GPU, 52.4.1apfmodels, 71.4
Giga Screen, 52.6arman, 1
GigaScreen, 52.6asia, 2.3.7
Green Chemistry, 80.6atomic property field, 52.2
GreenChem, 80.6          fields, 71.3, 71.4, 101
HTML5, 80.8.2automatic, 2.3
Herg, 58beehive, 17
IUPAC, 54bicyclics, 54
Java Script, 80.8.2bind, 52
MD, 42bioinformatics, 3
ML, 52.8blocks, 78.5
Merck, 4browser, 17, 22, 40
Molecular Editor, 80.8.2     pro license, 40.1.1
     weight, 54          platforms, 40.1.2
Molsoft News, 2.2browser-pro, 40
Monsanto, 4     pro, 88
Novartis, 4building, 78.5
PBS for lunix cluster, 52.1.1burnham, 2.2
PK, 67cancer, 5.21
PLoS ONE, 137careers, 5
PROTAC, 105carriers, 9
REAL, 52.6, 103case studies, 98
RIDE, 104cereblon, 105
RIDGE, 52.4.1charity, 3.2
RNA, 52chembl, 5.10
RTCNN, 52.6, 52.8chembl_workshop, 5.10
Scripps, 2.3.9chemical, 74, 80, 80.7
Structural Genomics Consortium, 2.3.1     cartridge, 78.2, 80.7
TSRI, 2.3.9     clustering, 61
UK, 5.9     collections, 78.3
University of Oxford, 2.3.1     database, 64
V-Synthes, 52.4     editor, 54
VHL, 105     file type, 53

     library, 62documentary, 5.21
     plots, 66documents, 2.3
     property, 58download, 12
          prediction, 58draw, 74
     search, 56     compounds, 54
          pharmacophore, 57drug, 52, 52.2, 80
     spreadsheet, 55, 67     design, 3, 52.2.1, 79, 100
     substructure, 67     likeness, 43
     superposition, 76, 101drugability, 80.8
     table, 67druglikeness, 80.8
     vendors, 78.3eBioinformatics, 2.3.10
     clustering, 61ebio, 2.3.10
     file, 53edit ligand, 100
     property.monitor, 54editor, 74
     search, 56effect of mutation, 47
chemicals, 78.4, 78.5, 78.5.1electrostatics, 52, 71.2.1
cheminformatics, 3, 67, 79eln, 71.6
chemistry, 17, 80.2email, 2
chemistry_tools, 50embed, 70, 71
children, 3.2embedppt, 97
chirality, 74emperor of all maladies, 5.21
chrome, 70enumeration, 62
cloud, 106eugene, 1
     computing, 106european workshop, 5.9
cluster, 74evaluate, 21
comp, 15evaluation, 134
competition, 140     feedback, 117
compound, 80.2, 80.7eventreg, 5.16
compounds, 78.4, 78.5, 78.5.1fakesec, 135
consulting, 79feature comparison, 138
contacts, 2fingerprint, 71.3.1, 71.5
converter, 80.2     models, 71.3.1
crystallographic_analysis_tools, 44firefox, 70, 71, 71.1
csv, 53first place, 140
customer, 79flexibility, 99
customers, 4flexible, 52.2, 52.2.1
d3r, 140focus, 5.21
d3r_success, 140forum, 5.7
database, 52.2, 52.2.1, 78.2, 78.3free, 22
dec08, 142.2full, 52
decomposition, 62full073004, 2.3.2
degradation, 105genesoft, 2.3.4
demo, 131getbrowser, 86
demo1107, 133giga search, 103, 104
design, 52.2gingerdemo, 80.5
dfaModels, 71.5glues, 105
directions, 2gnf, 2.3.8
dlid, 43grants, 2.2
dock, 100graphics, 5.22, 5.23, 5.24
docking, 3, 52, 52.2, 52.2.1, 79, 99, 106, 132, 140     gallery, 5.22

hitachi, 2.3.7icm_browser_search_pdb, 24
hitachipr, 2.3.7icm_browser_superimpose, 27
homology, 3, 17, 52, 78.1icm_browser_views, 33
hotels, 5.2.3icm_docking_comp, 5.6
howto, 132icm_pro, 52
html, 2.3icmpocketfinder, 43
hybrid, 71.5icmugm12, 5.1
hyperlinked text, 2.3imdp, 2.3
iMolview, 72     silico, 80.8
icb file, 40induced fit, 99
          writer, 40          docking, 99
icm, 6, 17, 22, 52, 52.2.1install acticm linux, 84
     browser, 22          mac, 85
          pro tutorials, 121          win, 83
          screenshots, 29     browser linux, 20
          tutorials, 120.1          mac, 19
     chemist, 67          win, 18
          cluster, 94installing icm for cluster, 52.1
          pro, 74interaction diagram, 63
               qsar, 78internet explorer, 71
               webinar, 5.12.1ipad, 72, 91
          spreadsheet, 93iphone, 72
          tutorials, 121.1isostere, 104
          webinar, 5.12jan11, 142.1
     cloud, 106japan, 2.3.7
     command language, 14job, 5
     objects, 23     opportunites, 9
     pocket finder, 43     queues, 52.1.1
     scarab, 71.6jobs, 9
     user group meeting, 5.1, 5.2july08, 142.4
icm-browser, 22knime, 71.7
icm-pro, 17     nodes, 71.7
icmPocketFinder, 3knowledge base, 5.7
icm_bioinformatics, 49la, 5.19
icm_browser, 22learn, 74
icm_browser_alignments, 26legal, 10.1, 10.2
icm_browser_distance, 32ligand editor, 100
icm_browser_file, 23likeness, 80
icm_browser_graphics, 34linker, 105
icm_browser_molecular_graphics, 25linux cluster, 52.1
icm_browser_pro, 40location, 2
icm_browser_pro_alignments, 39logP, 74, 80.8.1
icm_browser_pro_crystallography, 37logS, 80.8.1
icm_browser_pro_mesh, 28logo, 71.2
icm_browser_pro_molecular_documents, 40.1logos, 92
icm_browser_pro_movies, 35logp, 80.8
icm_browser_pro_plots, 31logs, 80.8
icm_browser_pro_spreadsheets, 38logsw, 80.8
icm_browser_pro_structure_analysis, 36london, 5.9
icm_browser_pro_superimpose, 30london_workshop 2015, 5.9

main, 121.2openings, 9
manual, 13papers, 10
markush, 62, 67pbs, 5.21, 52.1.1
max, 1     documentary, 5.21
meet09, 5.2pc, 2.1
meetmap, 5.2.1pdb, 23, 73, 80.1
microsoft, 71pdbv, 80.1
minimize, 100pharmacophore, 101
missing, 81     search, 57, 60
model, 78.1phone, 2
modeling, 3, 52, 79, 105plexus, 2.3.5
mol, 23, 52.2, 78.3plexusvaccine, 2.3.5
mol2, 23plosone, 137
molcart, 17, 78.2, 78.3, 78.4, 78.5, 78.5.1, 80.7pocket, 3, 52
     compounds, 78.3pockets, 43
molecular, 2.3, 80.7polar surface area, 80.8.1
     dynamics, 42     lam, 1
     viewer, 22position, 9
molecular_graphics, 51powerpoint, 71
moledit, 80.8.2predict, 74
molgnfpressrapril12, 2.3.8prediction, 78.1, 79, 80.8, 80.8.1
molscreen, 71.3, 71.4, 71.5presentations, 2.3, 40
molsoft, 1, 5.21, 80.7, 80.8price, 88
mpex, 2.3.3privacy policy, 10.2
mpex061803, 2.3.3pro, 52
mpo, 59product gallery, 5.24
mprop, 80.8     galleryold, 11
mpropdesc, 80.8.1     prices, 88
msearch, 80.7products, 17
multi parameter optimization, 59properties, 80.8.1
multiple slides, 40protac, 105
     views, 40protein, 22, 52, 73
mutation, 47     structure, 40
     prediction, 47protein-protein interactions, 80
mysql, 78.2protein_protein_docking, 46
neural network, 52.8, 80.3protein_structure_analysis, 41
     features, 139protein_structure_prediction, 48
     icm browser, 68publications, 6, 10
     version, 139published, 10
news, 2.2qsar, 71.3.1, 74
newsletter, 142queuing program, 52.1.1
non-commercial, 88rapf, 80.4
nonredundant chemical database, 78.3raush, 1
notebook, 71.6rebel, 71.2.1
notes, 71.1receptor, 52, 52.2, 52.2.1, 99
novartis, 2.3.8, 5.21, 106references, 6
nra, 92refinement, 3
oct08, 142.3release, 71.1
oda, 82results, 10
openMM, 42rgroup, 62

rings, 54          kinases, 112
rita, 1          nuclear receptor, 113
rna, 107          protein docking, 116
     drug design, 107          virtual ligand screening, 115
rotation, 2.3superimpose, 80.4, 80.5
ruben, 1support, 2, 13
sandiegofire, 3.2swissprot, 73
     analysis, 60switch_to_icm, 5.5
scaffold hopping, 101syrrx, 2.3.6
scarab, 71.6teaching, 2.2
score, 52.8technology, 3
scoring, 52.8templates, 54
screen, 79terms of use, 10.1
screening, 52.2, 78.4, 78.5.1, 99, 140test, 95
screenshot gallery, 5.23testimonials, 96
scripting, 14tl, 5.20
scripting_tutorials, 14tortool, 80.3
scriptreg, 5.13tosion, 80.3
sdf, 52.2, 53, 78.2, 78.3totrov, 1, 101
search, 74, 80.7, 90tox, 74
sequence, 49, 78.1toxicity, 58
servers, 80training, 3.1, 5.8, 5.12.2, 5.13, 5.16, 5.18
service, 130trainingreg, 5.18
services, 71.3, 79transaction void, 89
sgc, 2.3.1transitions, 2.3
similarity search, 80.7trial, 21, 134
simulation, 52     license, 21
sitemap, 141tsri, 2.3.9
sketch.compounds, 54tutorials, 119
slides, 2.3, 40     feedback, 118
small.molecule.drug, 54ugm2016, 5.17
small_molecule_docking, 45ugmArchives, 5.14
smooth view transitions, 40ultra large libraries, 52.4.1
software development, 3, 79          screening, 52.3
solubility, 80.8.1unsubscribe, 7
speak09, 5.2.4update, 139
speakermap, 5.2.2upgrade, 87
stereoisomers tautomers, 77     synthes, 52.4
structure, 73, 78.1vaccine, 2.3.5
     prediction, 3vendors, 78.5.1
structure-based, 3version372, 136
student, 88video activeicm1, 127
subscribe, 8     activeicm2, 128
substructure, 103     dock1, 129
     search, 80.7     ligand editor1, 124
success stories, 108          editor2, 125
          gpcr competition, 109          editor3, 126
               familyA, 110     pdb1, 122
               familyB, 111     pdb2, 123
          induced fit, 114view PDB, 80

viewer, 80.1, 80.2, 80.3 
virtual, 52.2, 78.5.1, 79 
     screening, 3, 52.2.1, 71.3, 80.8, 104, 106 
vls, 3, 17, 52.2, 99 
     on cluster, 52.1 
water solubility, 80.8 
web demos, 5.12.2 
webinar, 5.11, 5.12.2, 5.15 
     archives, 5.15 
     free chemist training learn cheminformatics, 5.12, 5.12.1 
webinar_registration, 5.12.2 
webinar_signup, 5.11 
whats new, 139 
which_product, 16 
workshop, 3.1, 5.1, 5.4, 5.8, 5.9, 5.13, 5.16, 5.18 
workshops, 2.2 
ws0905, 3.1 
xpdb, 17, 73