Sep 13 2024
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Index
2D, 6.8.8, 10.3.24, 10.3.28, 10.14, 10.19.2, 10.19.4 | Chemical Cluster, 21.6.3 |
Chemical Label, 6.8.11 | Search, 21.6.2 |
Interaction Diagram, 16.3.7 | CisTransAmide Angle, 13.1.9.6 |
bioisostere, 10.9.1 | Clash Threshold, 4.7.10 |
chemical label, 6.8.11 | DNA, 4.3, 8, 8.3.3 |
from PDB, 10.1.1 | Decomposition, 10.35.3 |
screening, 15 | Display, 22.2.26 |
to 3D, 10.19, 10.19.3 | Distance, 13.1.9.6 |
depiction, 10.19.2 | Dock Directory, 4.7.2 |
3D, 6.6, 6.8.8, 10.1.3, 10.3.24, 10.3.28, 10.3.31, 10.19.2, 21.2 | Docking, 22.2.26 |
QSAR, 10.37.4, 11.4, 21.14 | Drug Bank, 4.2.8 |
chemical, 10.4.16, 10.19.1 | Editor, 4.7.2 |
interactive ligand editor, 3.7.5 | Eintl, 12.1.1.8 |
ligand editor, 16.3.4 | Error in saving configuration settings: You are not a license administrator, 22.1.10 |
object, 6.3.9 | FILTER.Z, 4.7.2 |
pharmacophore, 13.3, 16.3.11 | gz, 4.7.2 |
print, 6.7 | uue, 4.7.2 |
printing, 6.7 | FTP.createFile, 4.7.11 |
screening, 15 | keep File, 4.7.11 |
stereo, 6.6 | proxy, 4.7.11 |
3DQsar, 11.4 | Filter.zip, 4.7.2 |
3D_Similarity_PDB_Search, 5.7 | Force Auto Bond Typing, 4.7.11 |
3Dqsar tutorial, 21.14 | Formula, 22.8.7, 22.8.10 |
bioisostere, 10.9.2 | Free Wilson, 10.35.2 |
predict, 5.6 | Frequently Asked Questions, 22 |
helices strands, 5.6.1 | GAMESS, 9.20.16 |
local flexibility, 5.6.4 | GIF, 3.6.1.15, 6.16, 6.16.2 |
protein health, 5.6.3 | GINGER, 10.22 |
tools identify ligand binding pocket, 5.6.6 | GPCR Modeling Example, 21.5.1 |
oda, 5.6.5 | GRAPHIC.store Display, 4.7.3 |
4D, 12.2.2, 21.12.1 | NtoC Rainbow, 4.7.4 |
dock, 16.15 | alignment Rainbow, 4.7.4 |
docking, 4.2.2 | atomLabelShift, 4.7.7 |
64, 22.1.3 | ballStickRatio, 4.7.1 |
APF, 10.36.4, 10.36.7, 10.37.4, 11.4, 15, 15.6, 21.14 | center Follows Clipping, 4.7.3 |
template, 10.36.3 | clash Style, 4.7.3 |
ActiveICM, 3.6.1.12 | clashWidth, 4.7.3 |
Area, 22.2.26 | clip Grobs, 4.7.3 |
Atom Single Style, 4.7.3 | Skin, 4.7.3 |
Atomic Property Fields, 11.4, 21.14 | Static, 4.7.3 |
Bad Groups, 22.8.7, 22.8.10 | discrete Rainbow, 4.7.4 |
Baell, 10.4.9 | displayLineLabels, 4.7.7 |
Beep, 4.7.11 | displayMapBox, 4.7.3 |
Blast, 22.2.25 | distance Label Drag, 4.7.1 |
BlastDB Directory, 4.7.2 | dnaBallRadius, 4.7.9 |
alphas, 6.8.3 | dnaRibbonRatio, 4.7.9 |
CHEMRIYA, 13.5 | dnaRibbonWidth, 4.7.9 |
COLLADA, 3.6.1.7 | dnaRibbonWorm, 4.7.9 |
CPK, 3.7.1 | dnaStickRadius, 4.7.9 |
ChEMBL, 4.2.3, 10.1 | dnaWormRadius, 4.7.9 |
fontColor, 4.7.7 | autoSaveInterval, 22.2.33 |
fontLineSpacing, 4.7.7 | enumeration Memory Limit, 4.7.11 |
grobLineWidth, 4.7.3 | max Nof Recent Files, 4.7.11 |
hbond Ball Period, 4.7.1 | Sequence Length, 4.7.4 |
Style, 4.7.1 | splash Screen Delay, 4.7.11 |
hbondAngleSharpness, 4.7.1 | Image, 4.7.11 |
hbondMinStrength, 4.7.1 | table Row Mark Colors, 4.7.4 |
hbondStyle, 4.7.1 | workspace Folder Style, 4.7.4 |
hbondWidth, 4.7.1 | workspaceTabStyle, 4.7.4 |
hetatmZoom, 4.7.1 | HBA, 22.8.7, 22.8.10 |
hydrogenDisplay, 4.7.1 | HBD, 22.8.7, 22.8.10 |
light, 4.7.3 | HTTP.proxy, 4.7.11 |
lightPosition, 4.7.3 | support Cookies, 4.7.11 |
mapLineWidth, 4.7.3 | user Agent, 4.7.11 |
occupancy Radius Ratio, 4.7.3 | Hbond to selection, 13.1.9.6 |
occupancyDisplay, 4.7.3 | Hbonds, 16.3.4 |
quality, 4.7.3 | How To Guide, 3 |
rainbow Bar Style, 4.7.4 | Html, 4.2.1.6 |
resLabelDrag, 4.7.7 | Http Read Style, 4.7.11 |
resize Keep Scale, 4.7.3 | Hydrogen.bond, 4.7.5 |
ribbonRatio, 4.7.9 | ICM Browser How To, 3.1 |
ribbonWidth, 4.7.9 | Pro How To, 3.2 |
ribbonWorm, 4.7.9 | graphics crash, 22.1.11 |
rocking, 4.7.4 | start, 1 |
Range, 4.7.4 | IMAGE.bondLength2D, 4.7.6 |
Speed, 4.7.4 | color, 4.7.6 |
selectionStyle, 4.7.3 | compress, 4.7.6 |
site Label Drag, 4.7.7 | gammaCorrection, 4.7.6 |
Shift, 4.7.7 | generateAlpha, 4.7.6 |
siteArrow, 4.7.7 | lineWidth, 4.7.6 |
stereoMode, 4.7.3 | lineWidth2D, 4.7.6 |
stickRadius, 4.7.1 | orientation, 4.7.6 |
surfaceDotDensity, 4.7.3 | paper Size, 4.7.6 |
surfaceDotSize, 4.7.3 | previewResolution, 4.7.6 |
surfaceProbeRadius, 4.7.3 | previewer, 4.7.6 |
transparency, 4.7.3 | print, 4.7.6 |
wire Width, 4.7.1 | printerDPI, 4.7.6 |
wormRadius, 4.7.9 | scale, 4.7.6 |
xstick Backbone Ratio, 4.7.1 | stereoAngle, 4.7.6 |
Hydrogen Ratio, 4.7.1 | stereoBase, 4.7.6 |
Style, 4.7.1 | stereoText, 4.7.6 |
Vw Ratio, 4.7.1 | INCHI, 10.19.3 |
GROB.arrowRadius, 4.7.3 | IQR, 17.4.6 |
atomSphereRadius, 4.7.3 | ISIS, 22.8.3 |
contourSigmaIncrement, 4.7.3 | Icm Prompt, 4.7.10 |
relArrow Size, 4.7.3 | InChi, 10.3.20, 10.4.12, 10.19.3 |
relArrowHead, 4.7.3 | key, 10.3.20 |
GUI.auto Save, 4.7.4 | Interaction Diagram 2D, 16.3.7 |
Interval, 4.7.4 | Internal Coordinates Table, 9.20.13 |
autoSave, 22.2.33 | Directory, 4.7.2 |
KMZ, 3.6.1.7 | Directory, 4.7.2 |
LCC, 13.5 | Style, 4.7.2 |
Log Directory, 4.7.2 | link, 17.1.40 |
LogP, 11, 17.6 | Search, 3.6.2.12, 3.6.2.13, 3.6.2.14, 3.6.2.15, 3.6.2.16 |
LogS, 11, 17.6 | Field, 3.6.2.13 |
MD, 14 | Homology, 3.6.2.15 |
MOL, 10, 10.3.3, 10.3.24, 10.3.25, 10.3.26, 10.3.27, 13.1.3, 17.2 | Identity, 3.6.2.14 |
MOL2, 13.1.3 | Sequence, 3.6.2.16 |
MOLT, 18.1 | convert, 5.1.2 |
MOVIE.frame Grab Mode, 4.7.4 | PFAM, 3.6.1.7 |
MPO, 10.33 | PLOT.Yratio, 4.7.8 |
Mac, 22.1.15 | color, 4.7.8 |
Atom Margin, 4.7.10 | date, 4.7.8 |
Sigma Level, 4.7.10 | draw Tics, 4.7.8 |
Markush, 21.6.9 | font, 4.7.8 |
create, 21.6.7 | fontSize, 4.7.8 |
File Size Mb, 4.7.11 | labelFont, 4.7.8 |
Max_Fused_Rings, 10.11 | lineWidth, 4.7.8 |
Mnconf, 4.7.10 | logo, 4.7.8 |
Model, 11.4 | markSize, 4.7.8 |
MolCart, 22.9 | orientation, 4.7.8 |
MolIPSA, 22.8.7, 22.8.10 | paper Size, 4.7.8 |
MolLogP, 22.8.7, 22.8.10 | previewer, 4.7.8 |
MolLogS, 22.8.7, 22.8.10 | rainbowStyle, 4.7.8 |
MolPSA, 10.11 | seriesLabels, 4.7.8 |
MolScreen, 15 | PLS, 11.1 |
MolVol, 10.11 | PNG, 3.6.1.15, 4.1.14, 6.16, 6.16.2 |
Molcart, 10.5.3 | PROTAC, 12.8 |
MoldHf, 10.11, 22.8.7, 22.8.10 | PSA, 10.11.7 |
Movie.fade Nof Frames, 4.7.4 | Pharmacophore RMSD, 13.1.9.6 |
quality, 4.7.4 | PowerPoint, 21.2, 22.3 |
Auto, 4.7.4 | Projects Directory, 4.7.2 |
NCBI, 22.2.25 | Prosite Dat, 4.7.2 |
NVIDIA, 22.1 | Protein, 22.2.26 |
Nof_Atoms, 10.11 | Viewer, 4.7.2 |
Nof_Chirals, 10.11 | Pub Chem, 4.2.9 |
Nof_HBA, 10.11 | PubMed, 4.2.1.7 |
Nof_HBD, 10.11 | Reference, 17.1.40 |
Nof_Rings, 10.11 | Pubchem, 4.2.9 |
Nof_RotBonds, 10.11 | QSAR, 11, 11.1, 17.6, 21.14 |
Non-overlap, 13.1.9.6 | R, 10.8, 10.35.1 |
Nvidia GL failutre, 22.1.11 | and S, 22.5.21 |
ODA, 22.2.26 | R-Group, 10.35.3 |
Optimal, 22.2.26 | R-groups, 16.5.3 |
Output Directory, 4.7.2 | REAL, 10.5.5, 13.5 |
PAINS, 10.4.9, 10.11.3 | RIDGE - Rapid Docking GPU Engine, 13.5 |
chemicals, 10.4.9 | RMSD, 5.4.2 |
PCA, 11.1, 11.5, 21.6.4 | RNA, 4.3 |
analysis, 10.28 | RTCNN, 12.1.1.4, 12.1.13.1 |
PDB, 4.2.1.6, 5.1.2, 5.3.3, 5.7, 8.1, 10.1.1, 16.18 | Ramachandran Plot, 5.5.9 |
Label Shift, 4.7.7 | background images, 7.15 |
Style, 4.7.7 | control, 7.13 |
RotB, 22.8.7, 22.8.10 | activeicmjs, 7.16 |
SALI, 10.35.5, 21.6.11 | activity, 11, 17.6 |
SAR, 11, 15.6, 17.4.25, 17.6 | cliff, 10.35.5, 10.35.6, 21.6.11 |
table, 10.35.3, 21.6.9 | tutorial, 21.6.11 |
SCARE, 12.2.4 | add database, 10.10.3 |
SCORE, 22.5.6, 22.5.17 | new data, 10.3.7 |
SDF, 10, 10.3.24, 10.3.25, 10.3.26, 10.3.27, 13.1.3, 17.2 | to table, 16.5.7 |
SEQUENCE.site Colors, 4.7.4 | adding fragment, 10.4.8 |
SITE.label Style, 4.7.7 | in editor, 10.4.8 |
labelOffset, 4.7.7 | adjust row height, 22.2.39 |
wrap Comment, 4.7.7 | administration, 10.10.5 |
SLIDE.ignore Background Color, 4.7.4 | advanced alignment selection, 8.7.14 |
Fog, 4.7.4 | alanine, 12.2.4 |
SMILES, 10.1.2, 10.2.4, 10.4.12 | album, 6.15.3 |
Score, 12.1.1.4 | alias, 10.4.5 |
Select Min Grad, 4.7.10 | align, 4.1.11, 10.14 |
Show Res Code In Selection, 4.7.7 | color 2D scaffold, 10.14 |
Smiles, 22.8.7, 22.8.10, 22.8.11 | dna protein, 8.6.4 |
SureChEMBL, 4.2.4 | multiple, 8.6.5 |
Swissprot, 3.6.1.7 | sequence structure, 8.6.3 |
Dat, 4.7.2 | two sequences, 8.6.2 |
link, 17.1.40 | DNA to protein, 8.6.4 |
Temp Directory, 4.7.2 | sequence, 8.6, 8.6.6 |
USER.email, 4.7.11 | two sequences, 8.3.5, 8.6.2 |
friends, 4.7.11 | alignment, 8.3.8, 8.6.1, 8.7.7, 8.7.7.1, 8.7.16, 8.8, 10.36.5, 10.36.6, 21.4.4, 22.4.12, 22.6, 22.6.2 |
full Name, 4.7.11 | annotation tutorial, 21.4.4 |
organization, 4.7.11 | box shade font, 8.7.7 |
phone, 4.7.11 | editing, 8.7.1 |
Uniprot, 17.1.40 | editor, 8.7 |
VHL, 12.8 | example, 8.3.14 |
VLS, 13.1, 13.1.1, 13.1.2, 13.1.9.2 | font size, 22.2.1 |
preferences, 13.1.4 | format, 8.7.11 |
Van Drie, 10.35.5 | gaps, 8.7.11 |
Label Style, 4.7.7 | image, 8.7.2 |
Volume, 22.8.7, 22.8.10 | profile, 21.4.4 |
Change, 13.1.9.6 | reorder, 8.3.12 |
Water Radius, 4.7.10 | search, 8.7.12 |
Wilson, 10.35.2 | secondary, 21.4.4 |
Wire Style, 4.7.1 | structure, 8.7.16, 22.6.2 |
XPDB Directory, 4.7.2 | selection, 8.7.13 |
Xstick, 3.7.1 | strength, 8.3.8 |
a-bright, 3.7.2 | profile, 8.3.8 |
about model, 11.1.1 | view options, 8.7.10 |
acceptor, 10.4.9, 10.37.1 | color, 8.7.9 |
active, 7.7, 22.3.3 | comment, 8.7.6 |
activeICM, 7.8 | consensus, 8.7.9, 8.7.14 |
activeicm, 7.7, 7.12, 7.14, 7.14.1, 22.3 | cut, 8.3.11 |
advanced, 7.14 | display title, 8.7.10 |
extract, 8.3.10 | screen, 10.37.3 |
gaps, 8.7.11 | tutorial, 21.8 |
horizontal scroll, 8.7.10 | cluster, 21.8.5 |
image, 8.7.2 | consensus, 21.8.2 |
multiple, 8.3.7, 8.6.5 | score, 21.8.3 |
options, 8.7.10 | screen, 21.8.4 |
rename, 8.7.10 | superposition, 21.8.1 |
reorder, 8.3.12 | alignment, 10.36.7 |
ruler, 8.7.10 | apf3Dqsa, 22.8.12 |
save, 8.7.2 | append, 17.1.44 |
search, 8.7.12 | table, 17.1.44 |
selection, 8.7.13, 8.7.14 | rows, 3.6.10.7 |
sequence offset, 8.7.10 | applying prediction models, 11.2 |
table, 8.7.10 | area, 5.5.3, 5.6.5, 12.7, 12.7.2, 12.7.3, 21.3.5 |
view, 8.7.10 | aromatic, 10.3.28, 10.37.1 |
alignments, 8.6, 21.4 | arrange, 4.1.13.1 |
allosteric, 5.6.6 | window, 4.1.13.1 |
alpha, 3.7.2 | graph, 22.2.8 |
channel, 4.7.6 | as2_graph, 4.6.5 |
ambient, 3.7.2 | as_graph, 22.2.8 |
amidinium, 10.15 | asparagine, 9.20.2 |
amino acid, 4.3 | assign, 6.1.3 |
acids, 10.4.6 | 2D coordinates, 10.19.2 |
anaglyph, 6.6, 22.1, 22.1.8 | helices, 5.6.1 |
stereo faq, 22.1.8 | strands, 5.6.1 |
analysis, 3.6.4, 8.3 | atom, 4.7.5, 10.3.28, 22.2.4, 22.2.5, 22.2.8, 22.2.16, 22.2.17, 22.4.10 |
angle, 5.5.7, 5.5.8, 6.8.5, 6.9, 6.12.6, 10.16, 22.2.18, 22.4.16 | charge, 22.4.21 |
angstrom, 22.4.7 | atomLabelStyle, 4.7.7 |
animate, 3.6.3.15, 6.10.7 | atomic energy circles, 16.3.5 |
view, 6.10.7 | property field, 10.36.5, 10.36.6, 16.3.11 |
animation, 6.10.7.1, 6.10.7.2, 6.10.7.3, 6.10.7.4 | score, 10.37.2 |
store, 6.10.7.4 | fields, 5.4.6, 5.8, 10.37, 10.37.1, 10.37.3, 13, 21.8 |
animations, 7 | attachment, 10.4.3, 10.5.1 |
annotate, 4.6.21, 10.13 | point, 10.34.4 |
alignment, 8.7.6 | author, 4.2.1.3 |
by substructure, 10.13 | close tree, 10.27.5 |
plot, 17.4.24 | play slide, 7.13 |
annotation, 8.7.6 | autofit, 12.5 |
antialias, 3.6.1.15, 3.6.3.10 | autosave, 22.2.33 |
lines, 3.6.3.17 | available properties, 10.11.1 |
lines, 3.6.3.17 | ave, 17.7.1 |
apf, 5.4.6, 5.8, 10.36.5, 10.36.6, 10.37, 11, 12.3, 13, 13.1.9.7, 13.3, 13.4, 16.3.11, 16.17, 21.8, 21.8.1, 21.8.2, 21.8.3, 21.8.4, 21.8.5, 22.8.12 | avi, 6.16, 6.16.2 |
flexible template, 10.36.6 | axes, 17.4.15 |
pairwise, 10.36.5 | axis, 17.4.11 |
super, 10.36.3 | options, 17.4.10 |
template, 16.12.3 | grid, 17.4.10 |
tools, 10.37 | range, 17.4.10 |
3DQSAR, 10.37.4 | title, 17.4.10 |
consensus ph4, 10.37.1 | b-factor, 5.6.4, 21.3.10 |
pairwise score, 10.37.2 | coloring scale, 22.2.38 |
background, 6.4.2, 6.4.3 | size, 16.9.1 |
color shortcut, 22.2.2 | browse, 10.3.31, 12.1.12.1, 19.4 |
images activeicm, 7.15 | mode, 10.3.31 |
image, 6.4.3 | molt, 18.2 |
backup, 3.6.2.11 | stack, 9.20.15 |
bad, 10.11 | build, 6.10.7.1 |
groups, 10.4.9 | homology model, 9.1.2 |
ball, 4.7.5 | hydrogens, 9.20.5 |
and stick, 3.7.1 | buried molSurface, 13.1.9.6 |
balloon, 17.4.26 | buttons, 7.14 |
bases, 10.4.6 | bye, 3.6.1.19 |
basicsel, 4.6.2 | alpha, 6.1.10 |
batch, 12.1.10, 12.7.9 | trace, 6.1.10 |
file, 12.1.10.2 | ca-trace, 6.1.10 |
index, 12.1.10.4 | cache, 7.14.1 |
loaded icm object, 12.1.10.1 | calculate, 10.11, 22.5.2 |
mol mol2, 12.1.10.3 | properties, 10.11 |
molcart, 12.1.10.5 | sequence similarity, 8.7.15 |
run, 12.1.11 | startup, 22.10.2 |
bayesian classifier, 11 | carbon, 22.2.4, 22.2.5 |
bbb, 10.11.4 | carboxylic acid, 10.15 |
beep, 22.2.35 | cartesian, 10.22 |
begin docking simulation, 12.1.8 | cation, 5.2.5 |
best, 10.3.34 | cavities, 5.5 |
bicyclics, 10.4.6 | closed, 5.5.4 |
binding, 21.5.3, 22.2.14, 22.5.2, 22.5.10 | ccp4, 22.2.27, 22.2.28 |
properties, 6.3.1 | cell, 5.3.2 |
bioinfo align multiple, 8.3.7 | center, 3.6.3.20, 4.1.3, 6.12, 6.12.5, 16.3.13, 17.1.40, 22.4.22 |
two sequences, 8.3.5 | on ligand, 16.3.13 |
links, 8.3.9 | and representative members, 17.7.2 |
menu, 3.6.4 | cereblon, 12.8 |
secondary structure, 8.3.2 | chain.breaks, 22.2.34 |
translation, 8.3.3 | chair, 22.5.20 |
bioisoester, 10.9 | change box size, 16.9.1 |
bioisostere, 10.9, 10.9.1, 10.9.2, 16.8 | height of all rows, 17.1.7 |
biological, 5.3.3 | ligand, 16.5.1 |
biomolecule, 3.6.5, 5.3.3, 21.3.8, 21.3.12 | row height, 17.1.7 |
bit, 22.1.3 | selection, 4.6.7 |
blast, 4.2.5, 8.4 | speed range, 6.10.7.2 |
search, 4.2.5 | changing font in alignment editor, 8.7 |
blood brain barrier, 10.11.4 | charge, 3.6.3.21, 5.1.3, 5.1.3.1, 5.1.3.2, 6.8.2, 10.4.3, 10.5.1, 10.7.1, 10.7.2, 10.7.3, 10.37.1, 13.1.9.6, 22.4.1 |
blue lines, 8.2 | groups, 12.1.6, 22.5.22 |
boat, 22.5.20 | check box, 7.6.6 |
bond, 5.1.3, 5.2.3, 5.2.3.1, 5.2.3.2, 9.9, 10.4.10, 22.4.1, 22.8.7, 22.8.10 | convert, 22.8.5 |
covalent, 22.4.2 | export excel, 10.2.3 |
type, 5.1.3.1, 5.1.3.2, 10.7.1, 10.7.2, 10.7.3 | save, 10.2 |
bonding, 6.1.8 | 3D, 10.2.5 |
preferences, 4.7.1 | editor, 10.2.4 |
box, 4.7.7, 6.8.16, 8.7.7, 8.7.7.1, 22.5.9 | image, 10.2.6 |
alignment, 21.4.4 | table, 10.2.2 |
view, 10.3.28 | search, 10.4.3, 10.5, 10.5.1, 10.5.3 |
chembl, 4.2.3, 4.2.4 | similarity, 10.4.3, 10.5, 10.5.1, 10.5.3 |
chemical, 10, 10.3.28, 10.3.30, 10.3.31, 10.3.34, 10.3.35, 10.4.10, 10.8, 10.10.4, 10.11.3, 10.19.2, 10.23, 10.34.4, 10.34.5, 10.36, 10.36.5, 10.36.6, 17.7.1, 21.6.4, 22.8.4, 22.8.5, 22.8.7, 22.8.8, 22.8.9, 22.8.10 | spreadsheet, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6, 10.3 |
clustering, 10.27, 10.27.6 | structure, 10.4.13 |
descriptors, 22.8.15 | superposition, 10.36.3, 10.36.7 |
dictionary, 10.4.4, 10.4.5, 10.4.6 | table, 10.3, 17.2 |
draw, 21.6.1 | cheminformatics, 10, 10.3, 22.8 |
spreadsheet tutorial, 21.6.1 | tutorials, 21.6 |
edit buttons, 10.4.11 | chemistry, 10.23, 22.8 |
editor, 10.4, 10.4.8 | convert, 10.19 |
not starting, 22.1.13 | 2dto3d, 10.19.1 |
fingerprint, 15 | pca, 10.28 |
fingerprints, 22.8.15 | smiles, 10.19.3 |
fragments, 10.3.33 | duplicates, 10.32 |
group, 10.4.5 | remove.redundant, 10.32 |
groups, 10.4.5, 10.4.8 | chemlib.so, 22.1.3 |
modifiers, 10.34.2 | chemspace append, 21.6.4.4 |
properties, 21.6.4 | build visualize, 21.6.4.1 |
right click, 10.4.3 | compare, 21.6.4.8 |
search, 10.5, 13.4 | delete row, 21.6.4.3 |
filter, 10.5.2 | distinguish, 21.6.4.7 |
text, 10.5.4 | export, 21.6.4.5 |
sketch, 21.6.1 | project, 21.6.4.6 |
space, 10.29 | select, 21.6.4.2 |
spreadsheet, 4.2.3, 10.1.3, 10.3.1, 10.4.14, 21.6.1, 22.8.13 | chi, 6.8.5, 22.2.18 |
compare, 10.3.22 | chiral, 10.24, 12.1.1.5 |
template, 10.3.2 | chirality, 10.24, 12.1.1.5 |
spreadsheets, 10.3 | considerations, 12.1.1.5 |
substituent, 10.9 | chrome, 22.3 |
substructure, 4.2.1.1 | cis trans proline, 21.5.2 |
table, 16.10, 22.8.11 | clash, 4.7.5, 6.8.15 |
display, 10.3.3 | volumes, 13.1.10 |
tables, 17.2 | classes, 10.3.28 |
toxicity, 10.11.3 | classification model, 15.5 |
2D, 10.7 | clear display and planes, 3.6.3.2 |
3D, 10.7 | selection, 4.6.6 |
append, 10.4.13 | planes, 3.6.3.2 |
clustering, 10.27, 10.27.1 | click, 4.1.12, 6.11, 6.12 |
convert, 5.1.3, 5.1.3.1, 5.1.3.2, 9.20.1, 10.7, 10.7.1, 10.7.2, 10.7.3, 22.4.1 | clip, 6.3.10, 6.13.1, 22.2.11 |
display.fit, 22.8.13 | clipboard, 6.15.3, 17.7.3 |
draw, 10.4.1 | clipping, 22.2.19 |
duplicates, 10.3.21 | planes, 6 |
editor, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6 | tool, 6.13 |
load, 10.1 | tools, 6.13 |
merge, 10.31 | clone, 3.6.1.2 |
new, 10.4.1 | close, 6.3.3, 6.3.4, 16.20 |
properties, 10.3.19 | downstream cluster, 10.27.5 |
query, 10.4.3, 10.5.1, 10.5.3 | project, 16.20 |
read, 10.1 | cavities, 5.6.6 |
save, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6, 10.4.13 | cloud, 13.1.7, 13.1.7.2 |
representative.center, 10.27.2 | table view, 17.1.6 |
clustering, 17.7, 21.6.3 | conditions, 10.5.2 |
cns, 10.33 | gen, 10.22 |
collada, 3.7.6, 6.3.7 | configuration error, 22.1.19 |
color, 5.6.3, 6.3.2, 6.3.3, 6.3.4, 6.3.9.4, 6.4, 6.4.1, 6.8.2, 6.8.3, 8.8, 10.3.35, 10.14, 17.1.45, 17.7.4, 22.2.4, 22.2.5, 22.2.16, 22.2.20 | conformation, 9.20.18, 10.22, 12.2.2 |
alignment, 8.7.9 | conformational entropy, 10.26 |
background, 6.4.2 | conformations, 22.9.8 |
by, 6.4 | conformers, 10.22 |
alignment, 8.8 | connect, 6.3.9.1, 6.12, 6.12.7 |
chemical, 10.3.35 | object, 6.12.7 |
faq, 22.2.20 | connectivity, 10.4.3, 10.5.1 |
key, 22.2.38 | consensus, 10.37, 21.8.2 |
scale, 22.2.38 | pharmacophore, 10.37.1 |
surface by proximity, 6.3.3 | construct, 3.6.1.1, 6.10.7.1 |
selection, 6.3.4 | molecule, 3.6.1.1 |
table, 10.3.27 | object, 3.6.1.1 |
2D sketch, 10.5.6.5 | contact, 5.5, 5.5.3, 21.3.5 |
background, 3.6.3.18, 6.4.2 | surface, 6.3.2 |
distance, 6.8.10 | contacts, 6.3.3, 6.3.4, 10.6, 13.1.9.8, 16.3.12 |
mesh, 6.3.9.3 | contour, 5.3.6, 5.3.7 |
table, 10.3.27 | convert, 5.1.2, 10.19.1, 10.19.5, 22.8.5 |
coloring, 6.4.1 | chemical, 10.3.24 |
column, 17, 17.1.6, 17.1.22, 17.1.25, 17.1.39, 17.1.40, 17.4, 17.4.1, 22.8.7 | 2D 3D, 10.7 |
annotation, 17.1.41 | 3D molecular editor, 10.4.16 |
order, 17.1.29 | from pdb, 5.1.3 |
plot, 17.4.6 | local database, 3.6.1.6 |
row width, 17.1.22 | pdb, 21.3.2 |
statistics, 17.1.32 | chem, 10.7.1 |
visibility order, 17.1.28 | smiles to 2D, 22.8.11 |
color, 17.1.10 | local.database, 3.6.1.6 |
hide, 10.3.8 | smiles, 10.19, 10.19.3, 10.19.4 |
show, 10.3.8 | converting pdb, 5.1.2 |
combinatorial chemistry, 10.34 | coordinates, 10.1.3 |
library, 21.6.8 | copy, 10.3.25, 10.4.11, 10.4.18, 10.5.6.2, 17.1.35 |
combine, 3.6.10.5 | cell, 17.1.36 |
display style, 4.7.9 | chemical, 10.3.25 |
command, 22.5.16 | loop, 9.4 |
line, 22.2.32 | paste row, 17.1.35 |
commands, 22.10.1 | row, 17.1.36 |
common substructure, 10.36.1 | rows, 17.1.44 |
compact tree, 10.27.5 | selection to table, 17.1.37 |
compare, 10.3.29, 10.30, 10.31 | chemical, 10.3.16 |
table, 10.3.22 | covalent, 16.10.1 |
tables, 10.30 | bond, 5.6.2, 21.9.3 |
compatible, 3.6.1.10 | docking, 12.4, 12.4.1, 16.16, 21.9.3 |
complex, 10.6, 13.1.9.5 | tutorial, 21.9.3 |
compound, 4.2.1.3, 10.23, 17.2 | cpk, 6.1.5, 22.2.21 |
compounds, 22.9.3 | crash, 3.6.2.11 |
compress, 4.7.6 | creat, 7.6.1 |
compressed, 17.1.6 | create, 17.1.1 |
new objects, 4.3 | column, 17.1.38 |
cross, 22.2.10 | distance.label, 6.9.4 |
section, 6.13 | label, 6.8.9 |
cryptic, 5.6.6 | row, 17.1.38 |
crystal, 5.3.2 | selection, 3.6.2.1 |
crystallographic analysis, 5.3 | tether, 9.20.5 |
biomolecule, 5.3.3 | dendrogram, 10.29.1 |
contour map, 5.3.6 | density, 5.3.4, 5.3.6, 5.3.7, 22.2.27, 22.2.28 |
convert2grid, 5.3.7 | depth, 6.3.12, 6.10.5 |
crystallographic cell, 5.3.2 | deselect, 22.2.7 |
load eds, 5.3.4 | design loop, 9.3, 9.20.10 |
maps cell, 5.3.5 | deviation, 22.4.7 |
symmetry packing, 5.3.1 | dfa, 15.3.3 |
tools, 21.3.8 | dfz, 15.3.2 |
cell, 3.6.5 | dialog, 7.6.5 |
neigbor, 5.3.1 | diffuse, 3.7.2 |
neighbors, 3.6.5 | dihedral, 5.5.8, 6.8.5, 22.2.18 |
crystallography, 5.3.4, 5.3.6, 5.3.7, 22.2.27, 22.2.28 | angle, 5.5 |
csv, 10.2.3, 17.1.2, 17.1.3, 17.1.21, 19.2 | dimensional, 22.8.6 |
current, 22.2.22 | directories preferences, 4.7.2 |
slide, 7.13 | directory, 4.7 |
curves, 17.4.5 | disappearing labels, 22.1.12 |
custom, 6.12, 10.3.3, 10.36 | dislay ligand receptor interaction, 10.6 |
actions, 17.1.40 | display, 4.1.4, 4.1.13.1, 4.7, 5.2.3, 5.2.3.1, 5.2.3.2, 6.8.15, 6.14, 10.24, 12.1.6.3, 22.2.4, 22.2.5, 22.2.8, 22.2.10, 22.2.11, 22.2.17, 22.2.21, 22.2.30, 22.2.32, 22.4.10, 22.4.11, 22.4.20, 22.8.4 |
fragments, 10.13 | chemical, 6.8.11 |
label, 6.8.8 | delete distances, 6.9.4 |
rotation, 6.12.2 | dihedral, 6.9.3 |
customized MPO score, 10.33.1 | distance restraints, 6.8.14 |
cut, 17.1.35 | distance2, 6.9.1 |
vertical alignment block, 8.3.11 | angles, 6.9 |
cyclic peptide, 9.19 | formal charge, 6.1.9 |
cys, 5.6.2 | gradient, 6.8.17 |
cysteine reactivity, 5.6.2 | hbond, 13.1.9.5 |
damaged skin, 22.1.12 | hbonds, 13.1.9.6, 16.3.4 |
dash, 22.2.12 | hydrogen, 6.1.7 |
database, 8.4, 10.10, 10.34.4, 13.1.3, 13.1.6, 18.1, 19 | atoms ligand editor, 16.3.3 |
file format, 13.1.3 | mesh, 6.3.5 |
search and alignment, 8.4 | meshes, 6.3.8 |
databases, 22.9.3 | options, 16.3 |
decompose.library, 21.6.9 | planar angle, 6.9.2 |
decomposition, 10.34.4, 10.35.1, 17.4.25 | tab, 3.7.1, 22.2.16 |
default, 4.1.13 | tether, 6.8.13 |
delete, 3.6.2.1, 4.6.6, 7.6.8, 22.4.9 | toggle, 6.8.16 |
alignment, 8.7.5 | CPK, 6.1.5 |
all, 3.6.2.2 | angle, 6.9.2 |
column row, 17.1.38 | chemical, 10.3.3 |
label, 6.8.9 | dihedral.angle, 6.9.3 |
alignment, 8.7.5 | distance, 6.8.10, 6.8.14, 6.9.1 |
all, 3.6.2.2 | electrostatic, 3.6.3.21 |
angle.label, 6.9.4 | energy.gradient, 6.8.17 |
polar, 6.1.7 | setup, 22.5.13 |
macroshape, 6.3.6 | start, 12.1.3 |
meshes, 6.3.5 | steps, 12.1.2 |
and display.macroshape, 3.7.6 | template, 12.3 |
molecule, 10.3.24 | templates, 16.12.3 |
origin, 6.8.12 | tutorials, 21.9 |
potential, 3.6.3.21 | background, 22.5.19 |
representations, 3.7.1 | batch, 12.1.10 |
restraints, 6.8.14 | conformations, 22.5.20 |
ribbon, 6.1.3 | flexible.rings, 22.5.20 |
skin, 6.1.4 | hitlist, 12.1.13 |
status, 22.2.32 | interactive, 12.1.9 |
surface, 6.1.6, 6.3.1 | preparation, 12.1.3 |
surfaces, 3.7.6 | procedure, 12.1.8 |
table, 10.3.3 | rank, 12.1.13 |
tethers, 6.8.13 | results, 12.1.12, 12.1.12.1, 12.1.12.2, 12.1.13 |
wire, 6.1.1 | sampling, 22.5.20 |
xstick, 6.1.2 | score, 12.1.13 |
distance, 5.5, 5.5.6, 6.8.10, 6.9, 10.30, 22.2.12, 22.4.8, 22.4.10 | stack, 12.1.12.2 |
faq, 22.4.10 | template, 12.3 |
restraint, 12.1.7 | document, 7.6.4, 7.6.5 |
label, 4.7.7 | navigation, 7.6.7 |
distances, 3.7.3 | documents, 6.15.3 |
disulfide, 9.9, 9.16 | dollar, 22.10.3 |
bonds, 9.16 | donator, 10.4.9 |
diverse set, 17.7 | envelope, 3.7.1 |
dock, 12, 12.1, 12.5, 16.10, 16.10.1, 21.9.3, 21.11.1, 21.11.2, 21.12.1, 22.5.3, 22.5.4, 22.5.5, 22.5.7, 22.5.8, 22.5.10, 22.5.11, 22.5.12, 22.5.13, 22.5.14, 22.5.15, 22.5.16, 22.5.21 | surface, 4.7.5 |
apf, 16.17 | dotted line, 6.1.3 |
chemical table, 12.1.15 | lines, 22.2.34 |
command, 22.5.16 | double, 10.4.10 |
macrocylce, 22.5.20 | doublet, 10.4.7 |
table, 16.10 | download, 22.1.1, 22.9.3 |
covalent, 16.10.1 | dpc, 15.3.4 |
docked ligand strain, 12.1.1.8 | drag, 4.1.11, 4.7.7, 6.8.3, 7.6.4, 8.6.6, 22.4.5 |
docking, 5.6.5, 12, 12.1.1, 12.1.2, 12.1.3, 12.1.16, 12.2, 12.2.1, 12.2.2, 12.2.3, 12.7, 12.7.1, 12.7.2, 12.7.3, 12.7.4, 12.7.5, 12.7.6, 12.7.8, 12.7.9, 12.7.10, 13.1, 13.1.1, 13.1.2, 13.1.6, 13.2, 13.5, 16.10, 16.10.1, 16.11, 21.9, 21.9.1, 21.9.2, 21.11.3, 21.12, 21.12.2, 22.5, 22.5.1, 22.5.9, 22.5.17, 22.5.18 | and drop sequences, 8.6.6 |
batch index, 12.1.10.4 | residue label, 3.6.3.16 |
covalent, 12.4 | draganddrop, 4.1.11 |
display, 12.1.17 | draw, 10.4.18, 10.34.5, 22.8.2 |
explicit group, 21.12.2 | chemical, 10.4.1 |
from table, 12.1.9.1, 12.1.9.2 | drop, 4.1.11, 7.6.4, 8.6.6, 22.4.5 |
introduction, 12.1.1 | drug, 10.11, 22.8.7, 22.8.9 |
macrocycles, 12.1.6 | bank, 4.2, 4.2.8, 10.1 |
maps, 12.1.4, 12.1.5 | like, 10.11.4 |
preferences, 12.1.6 | drugbank, 10.1 |
database scan, 12.1.6.2 | druglikeness, 10.4.9 |
display, 12.1.6.3 | dsPocket, 4.1.8 |
general, 12.1.6.1 | dual alanine scanning, 12.2.4 |
project, 13.1.5 | easy rotate, 3.6.3.12 |
table, 13.1.5 | ecfp, 11.3 |
results display, 12.1.17 | edit, 5.2.3.1, 16.5.8, 22.8.3 |
add sequence, 10.4.17 | enantiomer, 22.5.21 |
alignment, 8.7.1 | enantiomers, 12.1.1.5 |
chemical moledit, 10.3.26 | energy, 5.6.3, 6.8.15, 10.26, 10.26.2, 12.1.12.2, 22.5.1, 22.5.2, 22.9.8 |
ligand, 16.5, 16.5.1 | circles, 13.1.10 |
2D, 16.5.1 | maps, 12.1.4, 12.1.5 |
editor preferences, 16.2 | terms, 9.20.19 |
multiple substituents, 16.5.2 | ensemble, 9.20.18, 12.2.2 |
tools, 3.6.2.17 | entropy, 10.26.1 |
menu, 3.6.2 | enumerate formal charge states, 10.17 |
molecular document, 7.6.1 | reaction, 21.6.10 |
molecule, 10.4 | enumeration, 10.34.4 |
molt, 18.3 | eps, 10.2.6 |
selection, 3.6.2.5 | epsilon, 22.4.15 |
slide, 7.4.1 | eraser, 10.4.11 |
table row, 17.1.24 | errno, 22.1.3 |
molecule, 10.3.26 | error, 22.1.3, 22.1.19, 22.2.35 |
structure, 10.3.26 | evaluate score strain, 16.4 |
editor, 22.4.12 | exact, 10.30 |
editpdbsearch, 3.6.2.12 | excel, 10.2.3 |
eds, 5.3.4, 5.3.6, 5.3.7 | exclude fragment, 10.5.2 |
effect of mutation, 9.14, 9.15 | volume, 16.3.11 |
on binding tutorial, 21.5.3 | exit, 3.6.1.19 |
example2, 21.5.3.1 | explicit, 10.3.28, 12.2.1 |
stability tutorial, 21.5.4 | flex, 12.2.1 |
effort, 10.22, 10.36, 22.5.12 | group, 12.2.3 |
electron, 5.3.4, 5.3.6, 5.3.7, 22.2.27, 22.2.28 | docking, 12.2.3 |
denisty map, 5.3.5 | groups, 21.12.2 |
density map, 3.6.1.7, 3.6.5, 5.3.4, 5.3.6, 12.5 | export, 5.5.10, 19.4 |
contour, 3.6.5 | dock project, 16.19 |
electrostatic coloring scale, 22.2.38 | pdb, 4.5 |
potential, 3.6.3.21 | extra windows, 6.2 |
surface, 6.3 | extract, 4.4.2, 8.1, 10.1.3, 22.4.12, 22.8.8 |
electrostatics, 6.3.1, 12.7.8 | 2D, 10.1.1 |
elegant sketch, 6.10.4 | 3d coordinates to spreadsheet, 10.1.3 |
element, 10.4.10 | icb, 3.6.1.5 |
eln, 19.7 | object icb, 4.4.2 |
embed browser, 7.11 | sub alignment, 8.3.10 |
powerpoint03, 7.8 | icb, 3.6.1.5 |
powerpoint07, 7.9 | pharmacophore, 10.5.6.4 |
powerpoint10, 7.10 | faq, 22, 22.2, 22.2.13, 22.4, 22.5, 22.7, 22.10, 22.10.2 |
activeicm, 7.13 | ISISdraw, 22.8.3 |
script, 7.13 | MolCart, 22.9 |
browser, 7.7, 7.11 | activeicm, 22.3 |
firefox, 7.7, 7.11 | path, 22.3.3 |
internet.explorer, 7.7, 7.11 | alignment secondary structure, 22.6.2 |
microsoft, 7.7 | apf model, 22.8.12 |
powerpoint, 7.7, 7.8, 7.9, 7.10 | atom charge, 22.4.21 |
empty hostid, 22.1.18 | display, 22.2.17 |
enamine, 10.5.5 | autosave, 22.2.33 |
real, 13.5 | backbone, 22.2.13 |
job, 22.5.19 | merge, 22.4.5 |
beep, 22.2.35 | modeling, 22.7 |
binding energy, 22.5.2 | molcart 64bit, 22.1.3 |
blend transition, 22.2.31 | query, 22.9.5 |
breaks, 22.2.34 | sdf, 22.9.4 |
change torsion, 22.4.16 | text search, 22.9.6 |
chem table display, 22.8.4 | molecule c, 22.2.5 |
chemical monitor, 22.8.10 | moledit, 22.8.2 |
query2, 22.8.1 | movie planes, 22.2.19 |
cheminformatics, 22.8 | newscript, 22.10.1 |
clipping plane, 22.2.11 | nmr, 22.4.18 |
closest, 22.4.22 | nvidia error, 22.1.2 |
color carbon, 22.2.4 | origin, 22.2.10 |
skin, 22.2.16 | plist, 22.1.9 |
command line display, 22.2.32 | pmf score, 22.5.6 |
convert chemical from pdb, 22.4.1 | pockets, 22.2.14 |
covalent bond, 22.4.2 | preserve coordinates, 22.8.6 |
delete, 22.4.9 | quad buffer, 22.1.7 |
descriptors, 22.8.15 | receptor selection, 22.5.14 |
deselect, 22.2.7 | reload dock, 22.5.4 |
dihedral, 22.2.18 | remove salt, 22.8.14 |
dock charge groups, 22.5.22 | select, 22.2.6 |
probe, 22.5.13 | renumber, 22.4.4 |
racemic, 22.5.21 | residue number selection, 22.2.36 |
repeat, 22.5.5 | rmsd, 22.4.7 |
working directory, 22.5.23 | rmsdtips, 22.4.8 |
docking, 22.5 | rocking active ppt, 22.3.1 |
docktime, 22.5.11 | speed, 22.3.2 |
dollar, 22.10.3 | rotate chemical, 22.8.13 |
download install, 22.1.1 | scale display, 22.2.38 |
druglikeness, 22.8.9 | scanScoreExternal, 22.5.17 |
energy, 22.5.1 | scanScoreExternal2, 22.5.18 |
error admin, 22.1.10 | score, 22.5.8 |
extract ligand, 22.8.8 | script, 22.10 |
flexible dock, 22.5.15 | sequence secondary structure, 22.6.1 |
ring docking, 22.5.20 | alignments, 22.6 |
font size, 22.2.1 | smiles, 22.8.11 |
foreground table, 22.10.4 | solvent accessible surface table, 22.4.19 |
gl failure, 22.1.11 | ss, 22.4.17 |
gui, 22.2 | structure, 22.4 |
guided dock, 22.5.3 | superimpose, 22.4.6 |
hitlist, 22.5.7 | surface display, 22.2.37 |
hydrogen bond acceptors, 22.8.17 | thoroughness, 22.5.12 |
iSee, 22.2.30 | transparent ribbon, 22.2.3 |
icmPocketFinder, 22.5.10 | truncate mesh, 22.2.15 |
insert column, 22.8.7 | view stack, 22.9.8 |
installation, 22.1 | weak hydrogen bonds, 22.4.20 |
interactions, 22.2.12 | write pdb, 22.4.3 |
ligandbox, 22.5.9 | faqcontour, 22.2.28 |
measure distance ring, 22.8.16 | faqhbondstrength, 22.2.29 |
faqoda, 22.2.26 | free energy, 9.12, 9.13 |
faqstereo, 22.1.14 | radical, 10.4.7 |
fasta, 8.1.5 | wilson regression analysis, 10.35.2 |
fbdd, 13.2 | freeze column, 17.1.30 |
fft, 12.7.1 | row, 17.1.31 |
protein protein docking, 12.7.1 | frequency, 10.3.35 |
file, 3.6.1.3 | front, 6.3.10, 6.13.1 |
close, 3.6.1.13 | full model, 9.1.3 |
compatible, 3.6.1.10 | builder, 9.1.3 |
export, 3.6.1.12 | multiple chain, 9.1.3.1 |
high quality image, 6.15.1 | refinement, 9.1.3 |
load, 3.6.1.7 | scene antialias, 3.6.3.10 |
menu, 3.6.1 | screen, 3.6.3.8 |
password, 3.6.1.11 | function, 17.1.26, 17.1.32 |
preferences, 3.6.1.16 | functional.groups, 10.13 |
quick image, 3.6.1.14 | fuzzy, 12.3 |
icb, 4.1.10 | gap, 9.3 |
recent, 3.6.1.17 | general preferences, 4.7.5 |
bak, 3.6.2.11 | generalselecttools, 4.6.1 |
filter, 18.2, 22.2.4 | generator, 5.3.3, 10.22 |
selection, 4.6.8 | getting started, 4 |
filters, 13.1.5 | giga search, 10.5.5 |
find chemical, 10.3.32 | enamine, 10.5.5 |
fingerprint, 11, 11.3, 21.13, 22.8.1, 22.9.5 | sized library, 13.5 |
method, 11.3 | ginger, 10.22 |
fingerprints, 22.8.15 | glasses, 6.6, 22.1.6, 22.1.14 |
firefox, 22.3 | glutamine proline, 9.20.2 |
fit, 10.3.34, 12.5, 22.5.15 | google, 3.6.1.7 |
fitting, 12.5, 17.4.16 | objects, 6.3.7 |
flexibility, 5.6.4, 12.2.3, 21.12 | 3D, 3.7.6, 6.3.7 |
flexible, 10.36, 12.2, 12.2.1, 12.2.2, 21.12.1, 22.5.15 | gpcr_model, 21.5.1 |
APF superposition to template, 10.36.4 | graft loop, 9.4 |
docking, 16.13 | graphical, 22.2.4 |
receptor groups, 16.13 | display, 5.1.3.1, 5.1.3.2, 10.7.2, 10.7.3 |
ring sampling level, 12.1.6 | tutorial, 21.1 |
flood, 9.20.17 | 2D3D labels, 21.1.4 |
fog, 3.6.3.5, 6, 6.10.1 | annotation, 21.1.2 |
font, 4.7, 4.7.7, 5.2.3.1, 6.8.2, 6.8.3, 8.7.7, 8.7.7.1, 10.3.28, 17.1.40, 17.7.4 | color representation, 21.1.1 |
preferences, 4.7.7 | labels, 21.1.3 |
size, 8.7, 22.1.16, 22.2.1 | user interface, 22.2 |
form view, 17.1.5 | graphics, 4.1 |
formal, 5.1.3, 22.4.21 | card, 22.1.2 |
charge, 6.1.9, 10.15, 10.17 | controls, 6 |
format, 17.1.2, 17.1.40 | defects, 22.1.12 |
formula, 10.4.9, 10.11 | effects, 6.10 |
fragment, 10.3.35, 10.35.1, 13, 13.2, 16.11 | panel, 6.2 |
linking, 16.11 | preferences, 4.7.3 |
screening, 13.2 | shadow, 3.6.3.13, 6.10.2 |
fragments, 10.8 | green arrows, 8.7.16, 22.6.2 |
frame, 8.3.3 | lines, 8.2, 22.6.1 |
grob, 4.7.5, 5.3.4, 5.3.6, 5.3.7, 6.3 | introduction, 9.1.1 |
group, 10.35.1, 16.6 | older versions, 9.1.1.3 |
column, 17.1.46 | hover, 17.4.26 |
groups, 10.8, 10.11, 10.12 | 3D editor, 21.7 |
guanidinium, 10.15 | add columns, 10.3.4 |
gui, 4.1.1, 4.7.4 | cluster center, 10.27.2 |
menus, 3.6 | color 2D by ph4, 10.5.6.5 |
preferences, 4.7.4 | copy 2D, 10.3.16 |
tabs, 3.7 | paste, 10.3.6 |
guided docking, 12.1.7, 22.5.3 | decompose, 21.6.9 |
h-bond, 5.2.3, 5.2.3.1, 5.2.3.2, 22.2.12 | duplicate chemicals, 10.3.21 |
halogen, 10.11.2 | edit table, 10.3.17 |
hardware stereo, 3.6.3.7, 22.1 | tree, 10.27.4 |
hbond, 5.2, 21.3.6, 22.2.29 | excel, 10.3.10 |
strength, 22.2.29 | extract 3D ph4, 10.5.6.4 |
header, 4.2.1.6, 17.4.9 | filter, 10.3.12 |
health, 5.6.3 | find replace, 10.3.13 |
heatmap, 17.4.7 | mark row, 10.3.14 |
example, 17.4.7.1 | markush, 21.6.8 |
helix, 22.2.20 | structure, 21.6.7 |
help, 2 | merge tables, 10.3.23 |
videos, 2 | properties, 10.3.19 |
hetero, 10.3.28 | reactions, 21.6.10 |
scan, 16.7 | reorder, 10.27.3 |
hidden block format, 8.7.11 | sdf, 10.3.9 |
width, 8.7.11 | show hide, 10.3.8 |
hide, 17.1.39 | sort column, 10.3.5 |
column, 17.1.28 | standardize, 10.3.18 |
high, 3.6.1.15 | table hyperlinks, 10.3.15 |
quality, 3.6.3.11 | print, 10.3.11 |
highlight new data, 10.3.7.1 | activeicm, 3.3 |
his, 22.4.15 | create molecular documents, 3.3.3 |
histidine, 9.20.2, 22.4.15 | slides, 3.3.2 |
tautomer, 22.4.15 | getting started, 3.3.1 |
histogram, 13.1.9.2, 13.1.9.3, 17.4, 17.4.1, 17.4.9, 17.4.11, 17.4.13, 17.4.14, 17.4.15, 17.4.16, 17.4.17, 17.4.18, 17.4.20, 17.4.22 | ppt, 3.3.4 |
bins, 17.4.3 | web, 3.3.5 |
options, 17.4.2 | chemical clusering, 10.27.1 |
bin.size, 17.4.2 | icm browser convert display pocket, 3.1.4 |
bins, 17.4.3 | distances angles, 3.1.9 |
color, 17.4.2 | get started, 3.1.1 |
source, 17.4.2 | graphical display, 3.1.2 |
style, 17.4.2 | effects, 3.1.5 |
title, 17.4.2 | images, 3.1.7 |
historeceptomics, 4.2.10 | labels annotation, 3.1.6 |
hitlist, 12.1.12, 12.1.13, 13.1.8, 13.1.9.1, 13.1.9.3, 13.1.9.7, 22.5.7 | pro crystallographic tools, 3.2.6 |
cluster apf, 13.1.9.7 | get started, 3.2.1 |
columns, 12.1.13.1 | graphics, 3.2.2 |
export, 12.1.14 | plots, 3.2.8 |
homology, 4.2.1.2, 4.2.5, 9, 9.1, 9.1.1, 9.1.1.1, 9.1.2.1, 9.1.2.2, 9.1.3.1, 9.2, 9.7, 21.5 | sequence analysis, 3.2.7 |
model, 9.1, 9.1.1.2 | structure analysis, 3.2.3 |
surfaces, 3.2.4 | identity, 4.2.1.2 |
selections, 3.1.3 | image, 4.1.14, 4.7, 4.7.5, 6.15.3, 7.6.3, 10.2, 10.2.6, 17.4.21, 22.1.20 |
superimpose, 3.1.8 | advanced, 6.15.3 |
search, 4.2 | distortion, 22.1.20 |
use gui, 4.1 | preferences, 4.7.6 |
hrydrogen.bond, 22.2.29 | problem, 22.1.20 |
html, 3.6.1.12, 4.3, 7.6.1, 7.6.7, 22.3 | multiple, 3.6.1.7 |
html-doc font size, 22.2.1 | quality, 3.6.3.11 |
hybridization, 10.4.3, 10.5.1 | quick, 3.6.1.14, 6.15.2 |
hydrogen, 5.2.3, 5.2.3.1, 5.2.3.2, 6.1.8, 10.4.3, 10.5.1, 21.3.6, 22.2.12, 22.8.7, 22.8.10 | images, 6.15 |
atom display, 16.3.3 | impose, 12.2.2 |
bond, 5.2, 6.1.8, 10.6, 13.1.9.5, 21.3.6 | improve model, 11.1.3 |
acceptors, 22.8.17 | in-a-window, 22.1.7 |
donor, 10.37.1 | inchi, 10.19.3 |
label edit, 5.2.3.1 | increment, 17.1.27 |
move, 5.2.3.2 | id, 17.1.27 |
bonds, 5.2.4, 12.1.1.7 | index, 22.9.6 |
bond, 10.4.9, 22.4.20 | models, 15.1.2 |
hydrogens, 10.3.28 | induced, 22.5.15 |
remove, 10.3.18 | fit, 12.2, 12.2.1, 12.2.3, 16.13, 21.12, 21.12.1 |
hyperlink, 7.6.1, 7.6.2, 17.1.40 | insert, 7.6.4 |
hyrophobic, 10.37.1 | column, 17.1.26 |
iSee, 3.6.1.5, 3.6.1.12, 4.1.10, 6.15.3, 21.2, 22.2.30, 22.2.31, 22.3.3 | image, 7.6.3, 17.1.34 |
icb, 4.4.2, 4.5, 22.2.30, 22.3.3 | table, 17.1.34 |
icm, 22.3.3 | row, 17.1.33 |
chemist howto chemical search, 3.4.3 | script, 7.6.4 |
cluster, 3.4.5 | install, 1, 10.10.1, 19.1, 22.1.3, 22.1.4 |
combi library, 3.4.7 | installation, 22.1 |
ph4, 3.4.4 | interaction, 5.5.3, 10.6, 22.2.12 |
plots, 3.4.8 | fingerprint, 13.1.9.8 |
sketch, 3.4.1 | fingerprints, 13.1.9.8 |
spreadsheets, 3.4.2 | restraint, 12.1.7 |
stereoisomers tautomers, 3.4.6 | restraints, 12.1.7 |
pro 3D ligand editor, 3.5.1 | interactions, 16.3.12, 22.5.2 |
chem3D, 3.5.2 | interactive, 12.1.9, 21.2 |
chemsuper, 3.5.4 | loaded ligand, 12.1.9.2 |
energy, 3.5.3 | loop, 9.1.4.2 |
qsar, 3.5.5 | modeling, 9.1.4 |
tutorials, 3.5 | table ligand, 12.1.9.1 |
tutorials, 3.4 | modeling, 9.1.4 |
hanging, 22.1.13 | interface prediction, 21.10 |
object, 5.1, 21.3.2 | internal hydrogen bonds, 12.1.1.7 |
script, 17.1.40 | internet explorer, 22.3 |
icm-crash, 22.1.13 | interrupt, 6.10.7.3 |
icmFastAlignment, 8.4 | animation, 6.10.7.3 |
icmPocketFinder, 5.6.6, 22.2.14, 22.5.10 | introduction, 1 |
icmdb, 19 | invert selection, 17.1.23 |
icmjs, 7.16 | invisible residue label, 22.1.12 |
icmpocketfinder, 21.3.7 | iqr, 17.4.23 |
id, 17.1.27 | isee, 7.6.5 |
isostere, 13.4 | learn, 10.20, 10.21, 11, 11.1, 17.6, 22.8.12 |
isotope, 10.4.3, 10.5.1 | learning, 11 |
iupac, 10.2.7, 10.3.20 | theory, 11.5 |
javascript, 7.16 | least.squares, 17.4.16 |
job, 22.5.19 | library, 10.34.4 |
join, 10.31 | reaction, 21.6.10 |
jpg, 6.15 | license, 22.1.4 |
means, 17.7.1 | ligand, 5.2.2, 10.6, 10.26, 10.26.1, 10.26.2, 12.1.1, 12.2, 12.7.6, 12.7.7, 16.3.12, 16.3.13, 16.5.8, 16.10, 16.11, 22.4.5, 22.4.11, 22.5.2, 22.5.9, 22.8.8 |
kcc, 15.3.1, 15.5 | based screen, 10.37.3, 13.3 |
keep carboxyls neutral, 12.1.6 | best replace, 16.6 |
kernel regression, 15.3.1 | binding, 9.15 |
chemical, 10.4.10 | code, 4.2.1.3, 4.2.7 |
keyboard mouse, 6.11 | considerations, 12.1.1.2 |
keystokes in chem-edit, 10.4.10 | editor, 16, 16.10, 16.10.1, 16.16, 16.17 |
kmz, 3.7.6, 6.3.7 | bioisostere, 16.8 |
knime, 20 | covalent docking, 16.16 |
label, 4.7.7, 17.7.4, 22.2.17 | mrc, 16.15 |
atoms, 6.8.2 | preferences, 3.6.2.18 |
color, 6.8.7 | energetics, 10.26 |
move, 6.8.4 | conformational entropy, 10.26.1 |
residues, 6.8.3 | strain, 10.26.2 |
sites, 6.8.6 | pocket, 5.2.4, 22.4.11 |
variables, 6.8.5 | surface, 16.3.2 |
2D, 3.7.3 | receptor contacts, 16.3.12 |
3D, 3.7.3, 6.8.1 | display, 5.2 |
atom, 6.8.1 | interaction, 10.6 |
atoms, 6.8.2 | strain, 16.3.10 |
color, 6.8.7 | surface, 5.2.2 |
custom, 6.8.8 | tether, 16.12 |
delete, 6.8.1, 6.8.9 | ligand-based, 13, 13.3 |
distance, 6.8.10 | convert, 9.20.1 |
drag, 3.6.3.16 | editor, 16, 16.1 |
move, 3.6.3.16, 6.8.4 | binding.re-dock ligand, 16.9 |
residue, 6.8.1 | display, 16.3 |
residues, 6.8.3 | edit, 16.5 |
site, 6.8.1 | energy, 16.3 |
sites, 6.8.6 | hydrogen.bond, 16.3 |
variable, 6.8.1 | pocket, 16.3 |
variables, 6.8.5, 22.2.18 | preferences, 16.2 |
labeling, 6.8.1 | restraint, 16.12 |
labels, 6.8, 10.3.28 | surface, 16.3 |
distances, 6.8.10 | tether, 16.12 |
tab, 3.7.3 | optimization, 21.11.3 |
landscape, 4.7.6 | pocket, 4.1.8 |
large chemical space, 21.6.4 | receptor.contact, 5.5.3 |
font, 22.1.16 | ligand_pocket_interactions, 5.2.4 |
size, 22.1.9 | ligedit distance restraint, 16.12.2 |
sdf, 10.1.2 | tab, 3.7.5 |
layer, 6.14 | tether, 16.12.1 |
layers, 6.14 | light, 3.7.2 |
lighting, 6.3.9.4, 6.5 | size, 22.1.16 |
likeness, 10.11, 22.8.9 | machine learning, 21.13 |
line, 4.7.5, 17.7.4, 22.2.12 | macrocycles, 9.19 |
lineWidth, 4.7.3 | macros, 7.14 |
link, 8.3.9 | macroshape, 3.6.3.22, 6.3, 6.3.6 |
structure to alignment, 21.4 | make, 6.10.7.1, 17.1.1 |
linker, 12.8 | alignment, 8.6.1 |
links, 4.6.20 | animation, 6.10.7.1 |
linux, 10.10.1 | apf docking sar model, 15.6 |
lipinski rule, 10.33 | complex, 13.1.9.6, 16.20 |
list, 4.6.18 | flat, 22.8.13 |
lmhostid, 22.1.18 | molecular document, 7.6 |
load, 3.6.1.3, 3.6.1.17, 5.3.4, 5.3.6, 5.3.7, 8.1 | molt, 18.1 |
example alignment, 8.3.14 | receptor maps, 12.1.5 |
nmr model, 4.2.1.4 | selection, 4.6 |
protein structure, 5.1.1 | bond, 22.4.2 |
sequence, 8.1 | disulfide, 9.9, 22.4.17 |
extract pdb, 8.1.3 | molecule, 3.6.1.1 |
from file, 8.1.4 | object, 3.6.1.1 |
paste, 8.1.2 | making molecular slides, 7.1 |
swissprot, 8.1.1 | html, 7.6 |
libraries, 9.20.6 | manual change torsion, 16.5.4 |
local, 22.2.24, 22.2.25 | map, 4.7.7, 5.3.4, 5.3.6, 5.3.7 |
databases, 18 | cel, 5.3.5 |
database.browse, 18.2 | maps, 12.1.4, 12.1.5, 12.7.8, 21.12.1, 22.2.27, 22.2.28, 22.5.9 |
edit, 18.3 | mark, 17.1.45 |
query, 18.4 | row, 17.1.45 |
row, 18.3 | color, 17.4.14 |
localpdb, 22.2.24 | shape, 17.4.13 |
localseq, 22.2.25 | size, 17.4.13 |
lock, 6.3.10, 6.13.1, 10.3.31 | markush, 10.27.7, 10.34.1, 10.34.3, 10.35.1, 21.11.3 |
log, 17.4.6, 17.4.11 | docking, 21.11.3 |
logD, 10.11.6 | library, 21.6.8 |
logP, 10.4.9, 10.11 | mass, 22.4.22 |
logS, 10.4.9, 10.11 | matched pair, 10.35.6, 21.6.11 |
logarithmic, 17.4.11 | analysis, 10.35.6 |
logout, 3.6.1.19 | materials, 3.7.6 |
loop, 9.2, 9.4, 22.2.20 | max, 17.7.1 |
analysis, 9.6 | maxColorPotential, 4.7.10 |
design, 9.3 | maximum common substructure, 10.27.6, 10.29, 10.29.1 |
find pdb segments, 9.6 | dendrogram, 10.29.1 |
model, 9.2, 9.3, 21.5.2 | mcs, 10.27.6, 10.29.1 |
tutorial, 21.5.2 | rgroup decomposition, 10.27.7 |
modeling, 9.1.4.2, 9.5, 9.6, 9.20.10 | mean, 17.4.6, 17.4.23, 22.4.7 |
preferred residues, 9.5 | measure distance, 22.8.16 |
model, 9.20.9 | to ring, 22.8.16 |
sample, 9.20.9 | median, 17.4.6, 17.4.23 |
energy water, 9.20.17 | memory, 10.1.2 |
mac, 10.10.1, 22.1.9, 22.1.16 | menu, 7.6.5 |
font, 22.1.16 | chemistry, 3.6.14 |
homology, 3.6.13 | license, 22.1.4 |
molmechanics, 3.6.16 | search, 10.10.4 |
tools chemical search, 3.6.11 | start, 10.10.2 |
molecular editor, 3.6.12 | connect, 22.9.2 |
windows, 3.6.17 | hostid, 22.9.1 |
merge, 10.31, 22.4.5 | license, 22.9.1 |
two sets, 10.31 | molclart, 22.1.4 |
mesh, 5.2.1, 5.2.2, 5.3.4, 5.3.6, 5.3.7, 6.3, 6.3.9.1, 6.3.9.2, 6.3.9.4, 6.3.10, 6.3.11, 6.3.12, 6.13.1 | molecular, 10.3.30, 10.3.31, 10.3.34, 10.3.35, 10.22, 22.8.7, 22.8.10 |
clip, 6.3.10 | animations slides, 7 |
color lighting, 6.3.9.4 | documents, 21.2 |
options, 6.3.9 | dynamics, 14 |
representation, 6.3.9.3 | editor, 22.8.2 |
save, 6.3.11 | graphics, 6 |
options, 6.3.9 | matched pairs, 21.6.11 |
meshes, 6.3.2, 6.10.5 | mechanics, 9.20 |
surfaces grobs, 6.3 | convert, 9.20.1 |
tab, 3.7.6 | design loop, 9.20.10 |
metabolic oxidation, 15.7 | edit structure, 9.20.5 |
min, 17.7.1 | gamess, 9.20.16 |
minimization, 9.17 | generate normal mode stack, 9.20.14 |
cartesian, 9.20.8 | his asn, 9.20.2 |
global, 9.20.8 | ic table, 9.20.13 |
local, 9.20.8 | impose conformation, 9.20.4 |
minimum specifications, 1 | minimize, 9.20.8 |
mmff, 9.20.6, 10.4.16, 22.2.17, 22.8.5 | mmff, 9.20.6 |
type, 6.8.2 | regularization, 9.20.3 |
mmp, 21.6.11 | sample loop, 9.20.9 |
mnSolutions, 4.7.10 | peptide, 9.20.12 |
model, 9, 9.1, 9.1.1, 9.1.1.1, 9.1.2, 9.1.2.1, 9.1.2.2, 9.1.3.1, 9.2, 9.7, 9.17, 21.5 | protein, 9.20.11 |
domain interaction, 9.17 | terms, 9.20.19 |
start, 9.1.1.2 | view stack, 9.20.15 |
weight, 11.1.2 | modeling, 9 |
modelers view, 9.1.4.1 | table, 10.19.2 |
view, 9.1.4.1 | weight, 10.4.9 |
modeling, 9.20.3 | molecule, 22.2.8, 22.8.3 |
options, 9.1.1.1 | editor, 10.4 |
modeller view, 9.1.4 | moledit, 10.4.8 |
modification history, 16.5.6 | molmechanics, 22.9.8 |
modify, 9.11 | minimize, 9.20.8 |
amino acid, 9.11 | mmff, 9.20.6 |
group, 9.10 | molscreen, 13, 15 |
mol, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6, 10.4.13, 21.11.2 | custom model panel, 15.4 |
mol2, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6 | load models, 15.1.1 |
molcart, 10.10, 10.10.1, 10.10.2, 10.10.3, 10.10.4, 10.10.5, 18, 19, 22.1.3, 22.8, 22.8.1, 22.9.3, 22.9.4, 22.9.5, 22.9.6 | run, 15.1 |
add database, 10.10.3 | model type, 15.3 |
administration, 10.10.5 | results, 15.2 |
connect, 22.9.2 | molskin, 6.3.2 |
download dbs, 22.9.3 | molsynth, 10.11.5 |
hostid, 22.9.1 | molt, 18, 18.4 |
installation, 10.10.1 | monitor, 22.8.10 |
montecarlo, 22.9.7 | new, 8.1 |
mouse, 4.1.3, 6.11, 6.12 | icm session, 3.6.1.2 |
mov, 6.16, 6.16.2 | table, 17.1.1 |
move, 3.6.3.19, 4.1.11, 4.1.13, 5.2.3.2, 6.3.9.1, 6.3.9.2, 6.12, 6.12.7, 9.17, 22.4.5 | table, 17.1.1 |
column, 17.1.28 | nmr, 22.4.18 |
mesh, 6.3.9.2 | model, 4.2.1.4 |
slide, 7.4.2 | nntorsion, 6.12.6.1 |
structure, 6.12 | nof, 10.11.2 |
tools, 6 | chemical, 10.11.2 |
rotate, 6.11 | non-contiguous selection, 4.6.18 |
slab, 6.11 | normal modes, 9.20.14 |
translate, 6.11 | number of sp3, 10.11.2 |
z-rotation, 6.11 | numbers, 10.3.28 |
zoom, 6.11 | nvidia, 22.1.2 |
movie, 6.16.1, 22.2.19, 22.9.7 | obj, 6.7 |
montecarlo, 22.9.7 | object, 4.1.11, 4.5, 21.3, 22.2.8 |
making, 6.16, 6.16.2 | objects, 5.1.2 |
open, 6.16, 6.16.2 | in table, 17.3 |
mpa, 21.6.11 | in.table, 17.3 |
mpeg, 6.16, 6.16.1, 6.16.2 | occlusion, 6.3.12, 6.10.5 |
mpg, 6.16, 6.16.2 | shading, 6.3.12 |
mpo, 10.33 | effect, 6.10.5 |
customized, 10.33.1 | occupancy, 6.1.3, 21.3.10 |
mtl, 6.7 | display, 4.2.1.5 |
multi apf super, 10.36.7 | oda, 5.6.5, 12.7, 12.7.2, 12.7.3 |
panel, 6.2 | older version, 3.6.1.10 |
parameter optimization, 10.33 | omega, 6.8.5, 22.2.18 |
template, 9.1.4.3 | online databases, 10.5.5 |
windows, 6.2 | open, 3.6.1.3, 4.4, 17.1.2 |
multiple, 12.2.2, 21.12.1 | file, 4.4 |
chain, 9.1.2.2, 9.1.3.1 | password, 4.4.1 |
position group scan, 16.7 | with password, 3.6.1.4 |
rec, 12.2.2 | movie, 6.16, 6.16.2 |
receptor, 4.2.2, 21.12 | password, 3.6.1.4, 4.4.1 |
docking, 16.15 | optimal, 5.6.5, 12.7, 12.7.2, 12.7.3 |
protein, 22.2.5 | optimize, 9.20.2 |
mutant, 9.10, 22.4.13, 22.4.14 | oracle, 19 |
mutate, 9.12, 9.13, 22.4.15 | orange, 4.6.5 |
residue, 22.4.13 | selection, 4.6.5 |
N C, 22.4.14 | origin, 6.8.12, 22.2.10 |
mutation, 9.10, 9.12, 9.13, 9.15, 21.5.3, 21.5.4, 22.4.13, 22.4.14 | orthosteric, 5.6.6 |
protein binding, 9.12 | other selection, 4.6.19 |
ligand, 9.15 | outside, 22.5.9 |
peptide, 9.14 | overlay, 21.3.3, 22.2.5, 22.4.6 |
stability, 9.13 | pH, 10.18, 12.1.1.3 |
mysql, 19 | package.activeicm, 7.13 |
navigate workspace, 4.6.10 | packing, 5.3.1 |
nearest, 22.4.22 | pages, 19.7 |
neural network, 12.1.13.1 | pairwise, 10.36.5, 10.36.6 |
Torsion Profile Neural Network Prediction Engine, 6.12.6.1 | apf score, 10.37 |
password, 10.10.5 | angle, 5.5 |
paste, 10.4.11, 10.4.18, 17.1.35 | angle, 6.9.2 |
pca, 17.5 | plane, 6.3.10, 6.13, 6.13.1, 6.14, 22.2.11, 22.2.19, 22.2.21 |
pdb, 3.6.1.7, 4.2, 4.2.1.1, 4.2.7, 4.5, 5.1.3, 10.7.1, 21.3, 22.2.24, 22.2.25, 22.4.4 | faq, 22.2.21 |
chem gl, 10.7.3 | plot, 4.7, 4.7.8, 13.1.9.2, 17.4, 17.4.1, 17.4.4, 17.4.9, 17.4.11, 17.4.13, 17.4.14, 17.4.15, 17.4.16, 17.4.17, 17.4.18, 17.4.20, 17.4.21, 17.4.22, 17.4.23 |
iw, 10.7.2 | R group sar, 10.35.4 |
dormat, 4.5 | axis, 17.4.11 |
file, 22.4.3 | color, 17.4.14 |
html, 4.2.1.6 | columns, 17.4.6 |
preparation, 21.3.11 | function, 3.6.9, 3.6.9.1 |
search, 4.2.1, 4.2.1.2, 4.2.1.3, 21.3.1 | grid, 17.4.15 |
convert, 9.20.1 | header, 17.4.9 |
recent, 3.6.1.18 | inline, 17.4.22 |
search, 3.7.4, 4.1.2 | logarithmic, 17.4.12 |
pdbsearchfield, 3.6.2.13 | mark, 17.4.13 |
pdbsearchhomology, 3.6.2.15 | mean median iqr, 17.4.23 |
pdbsearchidentity, 3.6.2.14 | point label, 17.4.19 |
pdbsearcsequence, 3.6.2.16 | preferences, 4.7.8 |
peptide, 4.3, 9.14, 9.19, 12.6 | groups, 17.4.25 |
docking, 12.6 | regression, 17.4.16 |
modeling, 9.19 | selection, 17.4.18 |
percentage similarity, 8.7.15, 21.4.4 | zoom translate, 17.4.17 |
perspective, 3.6.3.9, 6.10.6 | axis, 17.4.15 |
ph4, 10.5.6 | display, 17.4.15 |
draw 2d, 10.5.6.1 | grid, 17.4.15 |
3d, 10.5.6.2 | inline, 17.4.22 |
search, 10.5.6.3 | logarithmic, 17.4.12 |
pharmacophore, 10.3.35, 10.5.6.5, 21.8.2 | pls, 10.20, 10.21, 11, 17.6, 21.13 |
2D, 21.6.6 | pmf, 22.5.6 |
3D, 21.6.5 | png, 3.6.1.14, 6.15, 6.15.2, 7.6.3, 10.2, 10.2.6 |
clone, 10.5.6.2 | pocket, 4.1.8, 5.2, 5.2.1, 5.2.2, 5.6.6, 12.1, 21.3.7, 22.2.14, 22.4.11, 22.5.10 |
draw2D, 10.5.6.1 | conservation, 22.4.12 |
draw3D, 10.5.6.2 | properties, 5.8 |
edit, 10.5.6.1, 10.5.6.2 | surface, 5.2.1, 13.1.10 |
move, 10.5.6.2 | peptide, 4.1.8 |
new, 10.5.6.2 | properties, 4.1.8 |
search, 10.5.6, 10.5.6.3, 21.6.5, 21.6.6 | pocketome, 4.2, 4.2.2, 5.8 |
phi, 6.8.5, 22.2.18 | pockets, 5.6.6 |
phylogenetic, 8.7.8 | point label, 17.4.19 |
phylogeny, 8.7.8 | portait, 4.7.6 |
pi, 5.2.5 | post edit ligand, 16.5.8 |
cation, 5.2.5 | screen, 13.1.9 |
pi, 5.2.5 | postscript, 4.7.6 |
picking, 6 | potential mean force, 13.1.4 |
picture, 3.6.1.14, 4.1.14, 6.15.2, 7.6.3 | ppbatch, 12.7.9 |
tips, 4.1.14 | ppepitope, 12.7.7 |
chart, 17.4.8 | ppmaps, 12.7.8 |
pipi, 5.2.5 | pprefine, 12.7.11 |
pka, 10.15 | ppresults, 12.7.10 |
planar, 5.5.7, 6.8.5, 22.2.18 | pproc, 12.7.3 |
ppsetproject, 12.7.4 | closed cavities, 5.5.4 |
ppsetreceptor, 12.7.5 | contact areas, 5.5.3 |
ppt, 7.12, 7.14, 22.3.3 | distance, 5.5.6 |
predict, 8.3.2, 10.20, 10.21, 11, 11.2, 17.6, 22.8.9, 22.8.12 | find related chains, 5.5.1 |
disulfide, 9.16 | finding dihedral angle, 5.5.8 |
metabolic oxidation, 15.7 | planar angle, 5.5.7 |
predicting bioassays, 11.2 | rama export, 5.5.10 |
compound properties, 11.2 | ramachandran plot, 5.5.9 |
prediction binding, 9.12 | rmsd, 5.5.2 |
preferences, 4.7, 13.1.5, 22.2.24, 22.2.25 | surface area, 5.5.5 |
preferred residues, 9.5 | similarity, 5.7 |
presentation, 7.6.5, 7.7, 7.12 | tutorials, 21.3 |
presentations, 7 | analysis, 21.3.4 |
preserve, 22.8.6 | contact area, 21.3.5 |
press-and-hold to rotate, 10.4.8 | convert, 21.3.2 |
pretty view, 16.3.6 | hydrogen bond, 21.3.6 |
primary aliphatic amines, 10.15 | icmpocketfinder, 21.3.7 |
principal component analysis, 17.5 | search, 21.3.1 |
regression, 11 | superimpose, 21.3.3 |
components, 11.5 | superposition, 5.4 |
print, 6.7, 17.4.20, 17.7.3 | select, 5.4.1 |
alignment, 8.7.4 | sites by apf, 5.4.6 |
plot, 17.4.20 | superimpose 3D, 5.4.3 |
alignment, 8.7.4 | grid, 5.4.5 |
printer.resolution, 4.7.6 | multiple proteins, 5.4.4 |
pro-drug, 10.25 | protein-protein, 5.6.5, 12.7, 12.7.1, 12.7.2, 12.7.3, 12.7.4, 12.7.5, 12.7.6, 12.7.8, 12.7.9, 12.7.10, 21.10 |
probe, 12.1.4, 22.5.13 | docking refinement, 12.7.11 |
problem, 22.1.14 | protein-proteindocking, 12.7.7 |
with selection, 22.1.12 | convert, 9.20.1 |
prodrug, 10.25 | protonated, 22.4.15 |
profile, 4.2.10, 8.3.8 | protonation, 10.18, 12.1.1.6 |
project, 3.6.1.5, 12.7.4, 19.6, 21.6.4.6 | state, 12.1.1.6 |
close, 3.6.1.13 | protonation_ph, 10.18 |
rename, 3.6.1.9 | protonation_ph_charge, 10.18.2 |
properties, 6.8.2, 10.11, 10.11.1, 22.8.7 | protonation_ph_concentration, 10.18.1 |
property, 10.4.9, 22.8.7, 22.8.8, 22.8.9, 22.8.10 | protprot, 12.7 |
expression, 13.1.9.6 | proximity, 6.3.3, 6.3.4 |
monitor, 10.4.9 | psa, 10.4.9, 10.11.7 |
protac, 12.8 | psi, 6.8.5, 22.2.18 |
protect, 7.6.8 | pubchem, 10.1 |
protein, 5.4.6, 8, 9.14, 22.4.5 | publication quality images, 6.3.2 |
chain, 9.3 | pubmed, 4.2.1.7 |
health, 5.6.3 | purple box, 3.6.3.23, 12.1.4, 16.9.1 |
model, 9.18 | qs hydrogen bond, 5.2.3 |
protein docking, 21.10 | pdb chem gl, 5.1.3.2 |
tutorial, 21.10 | iw, 5.1.3.1 |
sculpting, 9.17 | qsar, 10.20, 10.21, 11.1, 21.13 |
sequence, 10.4.17 | learn predict, 10.20 |
structure, 5 | predict, 10.21 |
analysis, 5.5 | quad buffer stereo, 22.1 |
quality, 3.6.1.15, 4.7.5 | pocket, 16.3.1 |
query, 9.1.2, 19, 19.3, 22.8.1, 22.9.5, 22.9.6 | surface, 16.3.1, 16.3.2 |
molt, 18.4 | flexibility, 21.12.2 |
processing, 10.5.3 | recover, 3.6.2.11 |
setup, 10.5.1 | cylinders, 8.7.16, 22.6.2 |
quick, 4.1.14 | lines, 8.2, 22.6.1 |
image, 6.15.2 | redo, 3.6.2.10, 10.4.11, 16.5.5 |
model multiple chain, 9.1.2.2 | refine, 9.7, 9.8 |
single chain, 9.1.2.1 | loops, 9.1.3 |
start move structure, 4.1.3 | side chain, 9.8 |
read pdb, 4.1.2 | sidechains, 9.1.3 |
representation, 4.1.6 | refinement, 12.2.4 |
selection, 4.1.5 | region, 12.7.7 |
level, 4.6.3 | regression, 10.35.2, 11.1, 11.5, 17.4.16, 21.13 |
what is selected, 4.6.4 | regul, 9.7 |
display.distance, 6.9.1 | regularization, 9.7, 9.20.3 |
start color, 4.1.7 | relationship, 11, 17.6 |
quit, 3.6.1.19 | covalent geometry, 12.1.6 |
group, 10.27.7, 10.34.4 | relaxed ligand, 16.3.9 |
table, 10.34.2 | reload, 12.1.16, 22.5.4 |
groups, 10.34.2 | dock results, 12.1.16 |
r-group, 10.27.7, 10.34.2 | remove, 22.2.6, 22.2.7, 22.2.10 |
decomposition, 10.27.7 | salt, 22.8.14 |
enumeration, 10.27.7 | explixit.hydrogens, 10.12 |
r-groups, 17.4.25 | salt, 10.12 |
racemic, 10.3.28, 10.19.5, 22.5.21 | rename, 17.1.25 |
radar, 17.4.6 | column, 17.1.25 |
rainbow, 4.7.5, 6.8.16, 10.3.35, 22.2.38 | project, 3.6.1.9 |
ramachandran plot, 5.5, 5.5.10 | renumber, 22.4.4 |
random forest, 11, 21.13 | reorder column, 17.1.29 |
range, 6.10.7.2 | replace chemical, 10.3.32 |
rapid isostere replacement, 13.4 | replacement, 16.6 |
ratio.selection, 4.7.5 | group, 16.8 |
dock ligand, 16.9 | report, 19.3 |
reactions, 10.8, 10.34.5 | representation, 3.6.3.19 |
reactive cysteine, 5.6.2 | residue, 4.7.7, 22.2.8, 22.4.15, 22.4.22 |
reactivity, 10.11.3 | alternative orientation, 21.3.11 |
read, 3.6.1.3, 3.6.1.17, 4.4, 8.1, 10.3.1 | content, 8.3.1 |
chemical, 10.1 | number selection, 22.2.36 |
spreadsheet, 10.3.1 | range, 4.6.18 |
table, 17.1.2 | content, 3.6.4, 8.3, 8.3.1 |
pdb, 4.1.2 | mutate, 22.4.13, 22.4.14 |
table, 17 | residues, 5.2.1, 5.2.2, 22.2.14 |
reagent, 10.34.5 | resize, 6.3.9.1, 6.15.3 |
rear, 6.3.10, 6.13.1 | mesh, 6.3.9.1 |
recent files, 3.6.1.17 | resolution, 4.2.1.3 |
pdb codes, 3.6.1.18 | restore, 3.6.2.11, 6.3.10, 6.13.1 |
receptor, 5.2.1, 5.2.2, 10.6, 12.1.1, 12.2.2, 12.7.5, 12.7.7, 16.3.12, 21.12.1, 22.5.2, 22.5.14, 22.5.15 | default, 22.1.9 |
considerations, 12.1.1.1 | recent backup, 3.6.2.11 |
flexibility, 16.15 | restrained docking, 12.1.7 |
results, 12.7.10 | rxn, 10.4.13 |
stack, 12.1.12.2 | safari, 22.3 |
retrieve columns, 22.5.24 | sali, 10.35.5 |
from original database, 22.5.24 | bridge, 21.3.6 |
review and adjust binding site, 12.1.4 | salts, 10.3.18 |
rgroup, 10.34.4 | sample, 9.18, 10.36 |
ribbon, 3.7.1, 4.7.9, 6.1.3, 22.2.23, 22.2.34 | double bond cis trans, 12.1.6 |
as a mesh object, 22.2.3 | peptide, 9.19, 9.20.12 |
faq, 22.2.23 | protein, 9.18, 9.20.11 |
preferences, 4.7.9 | racemic centers, 12.1.6 |
style, 4.7.9 | sar, 10.27.7, 10.35, 17.4.25 |
breaks, 6.1.3 | analysis, 10.35 |
cylinders, 6.1.3 | table, 10.35.3 |
smooth, 6.1.3 | save, 4.5, 6.3.11, 6.10.7.4, 8.1.5, 10.2.3, 17.4.21, 17.7.3, 22.2.33 |
worm, 6.1.3 | SMILES, 10.4.15 |
ribbonColorStyle, 4.7.9 | alignment, 8.7.3 |
ride, 13.4 | PDB, 4.5 |
gpu benchmark, 13.4.1.2 | pdb, 4.5 |
server setup, 13.4.1.1 | chemical mol, 10.4.13 |
setup, 13.4.1 | spreadsheet workspace, 10.2.1 |
ridge, 13.5 | to chemical spreadsheet, 10.4.14 |
right, 4.1.12 | docked ligand, 16.18 |
click, 4.1.12 | file, 4.5 |
rigid, 10.36 | hits, 16.5.7 |
substructure superposition to template, 10.36.2 | image plot, 17.4.21 |
ring, 5.2.5, 10.4.3, 10.4.6, 10.5.1 | ligand receptor complex, 16.18 |
stacking, 5.2.5 | object, 4.1.9 |
rings, 10.3.28, 10.22, 10.36 | pdb, 4.5 |
rmsd, 5.5, 5.5.2, 22.4.7, 22.4.8 | project icb, 4.1.10 |
rock, 3.6.3.15, 6.10.7, 6.10.7.1, 7 | sequence, 8.1.5 |
speed, 6.10.7.2 | slide, 7.4 |
root, 22.4.7 | smiles string, 10.4.15 |
mean square deviation, 5.5.2 | table, 17.1.21 |
rotate, 3.6.3.15, 4.1.3, 6, 6.10.7, 6.10.7.1, 6.12, 6.12.1, 6.12.2, 7, 10.3.34, 22.8.13 | spreadsheet, 16.5.7 |
chemical, 10.3.34 | tree, 17.7.3 |
when pasting, 10.4.8 | sdf, 10.4.14 |
easy, 3.6.3.12 | image, 3.6.1.15, 4.1.14 |
speed, 6.10.7.2 | object, 4.1.9 |
rotating fragment in editor, 10.4.8 | password, 3.6.1.11 |
rotation, 6.12.1 | picture, 3.6.1.15 |
rough surface, 22.2.37 | project, 3.6.1.8, 3.6.1.9, 3.6.1.10, 4.1.10 |
row, 17, 17.1.22, 17.1.35, 17.1.45 | table.view, 17.1.8 |
flag, 17.1.13 | saving, 3.6.1.8 |
height, 17.1.7, 22.2.39 | project, 3.6.1.8 |
mark, 17.1.13 | scaffold, 10.14 |
hide, 10.3.8 | hopping, 16.8 |
show, 10.3.8 | scale, 4.7.5, 22.2.38 |
ruler, 6.8.16 | scan, 9.20.7, 12.1.12.1 |
molscreen, 15.1.3 | hits, 12.1.12.1 |
rundock, 22.5.16 | group, 16.7 |
scarab, 19 | by number, 4.6.18 |
add user, 19.5 | number, 4.6.18 |
browse export data, 19.4 | tree, 17.7.2 |
installation, 19.1 | atom, 4.1.5, 4.6.3 |
new project, 19.6 | graphical, 4.1.5, 4.6.3 |
pages, 19.7 | object, 4.1.5, 4.6.3 |
query, 19.3 | purple.box, 3.6.3.23 |
upload data, 19.2 | residue, 4.1.5, 4.6.3 |
scare, 12.2.4 | workspace, 4.1.5, 4.6.3 |
scatter, 13.1.9.2 | selectall, 3.6.2.3 |
scatterplot, 13.1.9.4 | selecting.neighbors, 4.6.16 |
score, 12.1.13.1, 13.1.8, 16.4, 21.8.3, 21.8.5, 22.5.7, 22.5.8, 22.5.18 | selection, 4.6.4, 4.6.5, 4.6.21, 6.3.4, 10.4.11, 17.4.18, 17.7.2, 17.7.4, 22.2.4, 22.2.6, 22.2.7, 22.2.8, 22.2.13, 22.2.32, 22.4.9, 22.4.10, 22.4.22, 22.5.14 |
threshold, 13.1.4 | clear, 3.6.2.7 |
screen, 10.37, 21.8.4, 21.9, 21.11.1 | neighbors, 3.6.2.8 |
screening, 13.1, 13.1.1, 13.1.2, 13.5, 21.12 | alignment, 4.6.19 |
screenshot, 6.16, 6.16.2 | all, 3.6.2.3 |
movie, 6.16.2 | alter, 4.6.7 |
script, 4.3, 7.6.4, 7.6.5, 22.4.19, 22.10, 22.10.1, 22.10.2, 22.10.3 | atom, 3.6.2.5 |
sculpting, 9.17 | basic, 4.6.2 |
sdf, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6, 10.3.35, 10.10, 10.10.3, 10.19.1, 16.10, 18.1, 19.2, 21.11.2, 22.9.3, 22.9.4 | change, 4.6.7 |
search, 5.7, 10.10, 10.10.4, 18.2, 19.3, 22.9.6 | clear, 3.6.2.7 |
chembl, 4.2.3 | column, 17.1.23 |
drugbank, 4.2.8 | filter, 3.6.2.5, 4.6.8 |
filter, 10.5.2 | graphical, 4.6.16 |
in workspace, 3.6.2.4 | invert, 3.6.2.6, 17.1.23 |
pdb, 4.2.1 | level, 3.6.3.3 |
chemical, 4.2.1 | mode, 3.6.3.4 |
ligand code, 4.2.7 | near atoms, 3.6.2.8 |
pocketome, 4.2.2 | neighbors, 3.6.2.5, 3.6.2.8, 4.6.15, 4.6.17 |
pubchem, 4.2.9 | object, 4.6.11 |
surechembl, 4.2.4 | other, 4.6.19 |
tab field, 4.2.1.3 | properties, 3.6.2.5 |
pdb chemical, 4.2.1.1 | range, 17.1.23 |
sequence, 4.2.1.2 | residue, 3.6.2.5 |
tautomer, 10.5.3 | row, 17.1.23 |
uniprot, 4.2.6 | sphere, 4.6.15 |
in.workspace, 3.6.2.4 | spherical, 3.6.2.8 |
secondary aliphatic amines, 10.15 | superposition, 5.4.1 |
structure, 5.6.1, 22.2.20 | table, 4.6.19, 17.1.23 |
structure, 3.6.4, 6.1.3, 8.3, 8.3.2 | elements, 17.1.23 |
select, 4.6.12, 4.6.13, 17, 17.1.45, 22.4.22 | tools, 4.6.1, 4.6.2, 4.6.7, 4.6.8 |
a tree branch, 17.7.2 | whole, 4.6.11 |
all, 4.6.14 | workspace, 4.6.9, 4.6.17 |
amino acid, 4.6.13 | selectioninvert, 3.6.2.6 |
duplicates, 10.32 | selections, 4.6 |
molecule, 4.6.12 | links, 8.3.9 |
neighbors, 4.6.15 | selectneighbors workspace, 4.6.17 |
graphic, 4.6.16 | organized network, 10.29 |
object, 4.6.11 | sequence, 3.6.4, 4.2, 4.2.1.2, 4.2.5, 4.2.6, 4.3, 8, 8.1, 8.1.5, 8.2, 8.3, 8.3.7, 8.6.1, 8.6.5, 9.1.2, 10.4.17, 21.3, 21.4, 21.4.4, 22.4.12, 22.6, 22.6.1 |
residue, 4.6.13, 4.6.18 | analysis, 8.3 |
identity, 8.7.15 | stereo, 3.6.3.6 |
pattern, 4.2.1.2 | chain refinement, 16.14 |
reordering, 8.7.8 | chains, 9.8 |
secondary structure, 8.2, 22.6.1 | side-by-side, 22.1.19 |
similarity, 8.7.15 | side-chain sampling, 12.7.11 |
sites, 8.5 | side-chains, 12.2.1 |
structure, 8.3.6 | sigmaLevel, 5.3.6, 5.3.7 |
type, 8.3.4 | similarity, 10.30 |
DNA, 8.3.4 | simulation, 14, 22.9.8 |
alignment, 8.3.5, 8.6.2, 8.6.6 | length, 22.5.12 |
amino acid, 8.3.4 | simulations, 22.7 |
nucleotide, 8.3.4 | single, 10.4.10 |
protein, 8.3.4 | chain, 9.1.2.1 |
search, 8.4 | singlet, 10.4.7 |
structure.alignment, 8.3.6, 8.6.3 | sites, 5.4.6 |
sequences, 8, 22.2.25 | size, 5.2.3.1 |
unique, 8.3.13 | sketch accents, 6.10.3 |
extract, 8.3.13 | markush, 10.34.1 |
unique, 8.3.13 | reaction, 12.4.1 |
server, 13.1.7.2 | smiles, 10.4.12 |
error, 22.1.17 | accents, 3.6.3.14, 6.10.3 |
set, 10.3.31, 22.4.21 | skin, 3.7.1, 6.1.4, 22.2.16 |
formal charges, 10.15 | slab, 6.3.10, 6.13.1 |
server, 22.1.17 | slice, 6.13 |
bond type, 9.20.5 | slide, 6.10.7.4, 7.2, 7.3.1, 7.6.1, 22.2.31 |
charges, 9.20.6 | effects, 7.5 |
chirality, 9.20.5 | movie, 6.16.1 |
disulfide, 9.9, 22.4.17 | file, 7.2 |
bond, 9.20.5 | navigation, 7.3.2 |
formal charge, 9.20.5 | show, 7.3 |
tether, 9.20.5 | blend, 7.5 |
types, 9.20.6 | edit, 7.4.1 |
setAPFparams, 22.8.12 | effect, 7.5 |
setup, 12.7.6 | smooth, 7.5 |
ligand receptor, 16.1 | transition, 7.5 |
shade, 8.7.7, 8.7.7.1 | slides, 6.16.1, 7, 7.1, 7.3, 22.2.30 |
alignment, 21.4.4 | smiles, 10.4.9, 10.11, 10.19, 10.19.3, 10.19.4 |
shading, 6.3.12 | smooth, 6.3.9.3 |
shadow, 6.10.2 | surface, 22.2.37 |
share model, 11.1.4 | solid, 6.3.9.3 |
sheet, 22.2.20 | solvent.accessible.area, 22.4.19 |
shell preferences, 4.7.10 | sort hitlist, 13.1.9.1 |
shift, 6.8.3 | table, 3.6.10.4 |
shine, 3.7.2, 4.7.5 | sorting, 13.1.9.1 |
shineStyle, 4.7.3 | compounds, 17.7 |
show, 7.3.1, 17.1.39 | sp3, 10.11.2 |
hide column, 17.1.39 | spec, 3.7.2 |
side, 10.3.29 | specifications, 22.1.5 |
by side, 10.3.29 | specs, 1 |
error, 22.1.19 | faq, 22.1.5 |
sphere, 22.4.11 | heavy atoms, 5.4.3 |
spherical, 22.4.9, 22.4.12 | multiple, 5.4.4 |
split, 10.35.1 | superposition, 10.36, 10.36.1, 10.36.2, 10.36.5, 10.36.6, 21.3.3, 21.8.1 |
spreadsheet, 10.19.2 | surface, 3.7.1, 4.7.5, 5.2.1, 5.2.2, 6.1.6, 6.3, 6.3.3, 6.3.4, 22.2.16, 22.2.37, 22.4.19 |
square, 22.4.7 | area, 5.5 |
stability, 9.13, 21.5.3, 21.5.4 | area, 5.5.5 |
stack, 9.18, 9.20.18, 12.1.12, 12.7.10, 22.9.8 | surfaces, 5.2, 6.3.1, 6.3.2, 6.10.5 |
stacking, 5.2.5 | surrounding, 22.4.11 |
stacks, 9.20.18 | swissprot, 8.1, 8.5 |
standalone hitlist, 12.1.14 | sxstrace, 22.1.19 |
standard table, 17.1 | symmetric oligomer, 9.1.3 |
standardize, 10.12 | symmetry, 5.3.1, 5.3.3, 21.3.8, 21.3.9 |
table, 10.12 | synthesize, 10.11.5 |
start, 10.10.2 | synthetic feasibility, 10.11.5 |
dock, 12.1 | system preferences, 4.7.11 |
startup, 22.10.2 | tab, 17.1.2, 17.1.21 |
static, 22.4.8 | pdb, 3.7.4 |
stereo, 4.7.6, 6.6, 10.3.28, 10.4.2, 22.1, 22.1.6, 22.1.7, 22.1.14 | table, 4.3, 10.1.3, 10.3.24, 10.3.25, 10.3.28, 10.3.30, 10.3.31, 10.3.34, 10.3.35, 10.19.2, 10.22, 16.10, 17, 17.1.6, 17.1.35, 17.1.40, 17.1.45, 17.4, 17.4.1, 17.4.4, 17.4.9, 17.4.11, 17.4.13, 17.4.14, 17.4.15, 17.4.16, 17.4.17, 17.4.18, 17.4.20, 17.7.1, 22.4.19, 22.8.4, 22.8.5, 22.8.7, 22.8.8 |
bond, 10.4.2 | alignment, 17.1.12 |
hardware, 3.6.3.7 | clone, 17.1.16 |
side-by-side, 3.6.3.6 | color, 17.1.10 |
stereohard faq, 22.1.6 | column format, 17.1.40 |
stereoisomer, 10.19.5 | copy, 17.1.36, 17.1.37 |
stereoisomers, 10.24 | delete, 17.1.17 |
stick, 4.7.5 | edit, 17.1.24 |
stl, 6.7 | filter, 17.1.43 |
stop, 6.10.7.3 | find, 17.1.9 |
store, 3.6.3.19, 6.10.7.4, 22.2.22 | replace, 10.3.32 |
current view, 3.6.3.19 | font, 17.1.11 |
faq, 22.2.22 | size, 22.2.1 |
strain, 5.6.3, 10.26, 10.26.2, 12.1.1.8, 16.4 | grid, 17.1.5 |
strip, 22.4.9 | histogram, 17.4.1 |
structure, 5.3.3, 11, 17.6, 21.3, 22.4 | insert, 17.1.26 |
analysis, 21.3.4 | layout, 17.1.5 |
ensemble, 9.20.14 | learning, 17.6 |
representation, 6.1 | mark, 17.1.13 |
smiles, 10.19.4 | row, 17.1.13 |
structure-based, 13 | mouse, 17.1.47 |
structures, 10, 10.1 | navigation, 17.1.4 |
style, 4.7.5 | new column, 17.1.26 |
substituent, 10.9.1, 10.9.2, 10.34.2, 16.5.2 | plot, 17.4 |
substructure, 10.10.4, 10.13, 10.36.1, 10.36.2, 12.3, 22.8.1, 22.9.5 | print, 17.1.19 |
template, 16.12.3 | rename, 17.1.15 |
alerts, 10.13 | rightclick, 17.1.14 |
sulfur, 9.9 | row height, 22.2.39 |
superimpose, 3.6.8, 5.4.2, 5.4.6, 10.36.4, 21.3.3, 22.2.5, 22.4.6, 22.4.7, 22.4.8 | save, 17.1.3 |
3D, 5.4.3 | selection, 17.1.3 |
Calpha, 5.4.3 | search, 17.1.9 |
arrange.grid, 5.4.5 | select, 17.1.23 |
backbone, 5.4.3 | setup, 17.1.18 |
split fragments, 10.3.33 | setup, 17.1.18 |
view, 17.1.5 | sort, 3.6.10.4, 10.3.5, 17.1.42 |
save, 17.1.8 | standard, 17.1 |
zoom translate, 10.3.30 | view, 10.3.29 |
action, 17.1.47 | width, 17.1.4 |
alignment, 17.1.12 | tables, 10.30, 17 |
append, 17.1.43 | tag, 4.6.21, 16.5.7, 17.1.46 |
clone, 17.1.16 | tags, 4.6.21 |
color, 17.1.10 | tautomer, 10.23, 22.4.15 |
column, 10.3.4, 17.1.26, 17.1.32, 17.1.39 | tautomers, 10.23 |
columns, 10.3.8 | temperature, 5.6.4 |
compare, 10.3.22 | template, 9.1.2, 10.4.6, 10.36 |
copy, 10.3.6 | docking, 22.5.3 |
cursor, 17.1.47 | templates, 10.4.6 |
delete, 17.1.14, 17.1.17 | terminal, 10.3.28 |
display, 22.10.4 | font size, 22.2.1 |
double.click, 17.1.47 | tether, 12.1.7, 16.12.1, 16.12.2 |
edit, 10.3.17 | text, 4.7.7, 7.6, 7.6.1, 7.6.7, 10.3.28, 10.10.4, 17.4.24, 22.9.6 |
excel, 10.3.10, 17.1.20 | search, 10.5.4 |
filter, 10.3.12, 17.1.43 | texture, 3.7.6 |
find-replace, 10.3.13 | thoroughness, 10.22, 10.36, 22.5.12 |
to screen, 17.1.4 | three, 10.3.24, 22.8.6 |
font, 17.1.11 | threshold, 4.7.5 |
foreground, 22.10.4 | tier, 4.1.13 |
grid lines, 17.1.4 | time, 22.5.11 |
hide, 17.1.39 | machine, 22.1.15 |
hyperlink, 10.3.15 | tissue, 4.2.10 |
insert, 17.1.33 | racemic, 10.19 |
join, 3.6.10.5 | tools 3D, 3.6.6 |
label, 10.3.14 | analysis, 3.6.7 |
landscape, 17.1.18 | append rows, 3.6.10.7 |
mark, 10.3.14 | extras, 3.6.9 |
merge, 3.6.10.5, 10.3.23, 10.31 | plot function, 3.6.9.1 |
mouse, 17.1.47 | superimpose, 3.6.8 |
name, 17.1.15 | table, 3.6.10 |
new, 17.1.1 | Learn, 3.6.10.1 |
options, 17.1.14 | clustering, 3.6.10.3 |
orientation, 17.1.18 | merge, 3.6.10.5 |
portrait, 17.1.18 | predict, 3.6.10.2 |
print, 10.3.11, 17.1.4, 17.1.19 | tooltip, 17.4.26 |
read, 17.1.2 | balloons, 17.4.26 |
rename, 17.1.15 | torsion, 6.12.6, 9.20.7, 16.5.4, 22.4.16 |
right click, 17.1.14 | analysis, 10.16 |
row, 17.1.33 | angles, 6.12, 6.12.6 |
rows, 3.6.10.7 | scan, 9.20.7 |
save, 10.3.9, 17.1.3, 17.1.4, 17.1.21 | toxscore, 10.11.3 |
scale, 17.1.18 | trace, 6.1.10 |
scroll, 17.1.4 | transition.blend, 22.2.31 |
sdf, 10.3.9 | transitions, 7, 22.2.30 |
select, 17.1.23 | translate, 4.1.3, 6, 6.12, 10.3.30 |
transparent, 6.3.9.3 | unsatisfied hydrogen bonds, 16.3.8 |
background, 6.15.3 | unusual peptide, 4.3 |
ribbon, 22.2.3 | upload, 19.2 |
surface, 22.2.37 | use activeicm, 7.12 |
tree, 8.7.8, 10.27.7, 17.7.2, 17.7.3, 17.7.4 | user, 10.10.5, 19.5 |
branch swapping, 8.7.8 | defined groups, 16.5.3 |
distance, 10.27.3 | modifiers, 16.5.3 |
edit, 10.27.4 | user-defined groups, 10.4.5 |
reorder, 10.27.3 | van der waal, 6.8.15 |
triplet, 10.4.7 | variable, 4.7.7, 22.2.8 |
trouble shooting, 22.1.11 | verbose, 10.22 |
trouble-shooting, 22.1.12 | large sdf files, 10.1.2 |
truncating a mesh object, 22.2.15 | vicinity, 10.22 |
crash qlock, 22.1.13 | video, 2, 6.16, 6.16.1, 6.16.2 |
tsv, 17.1.21 | view, 3.6.3.19, 7.3.1, 10.3.28, 22.2.22, 22.9.8 |
tut analyze alternative orientations, 21.3.11 | animate view, 3.6.3.15 |
occupancy, 21.3.10 | center, 3.6.3.20 |
symmetry, 21.3.9 | color background, 3.6.3.18 |
multiple receptor, 21.12.1 | dock results, 12.1.12 |
tut3, 21.5 | fog, 3.6.3.5 |
tut3e, 21.3.12 | macroshape, 3.6.3.22 |
tut5a, 21.9.1 | menu, 3.6.3 |
tut5b, 21.9.2 | mesh clip, 6.13.1 |
tut5c, 21.11.1 | perspective, 3.6.3.9 |
tut5e, 21.11.2 | selection level, 3.6.3.3 |
tutorial 2D pharmacophore, 21.6.6 | mode, 3.6.3.4 |
3D pharmacophore, 21.6.5 | shadow, 3.6.3.13 |
chemical clustering, 21.6.3 | sketch accents, 3.6.3.14 |
search, 21.6.2 | slide show, 7.3.1 |
molecular documents, 21.2 | tools, 3.6.3 |
sequence alignment, 21.4 | tree, 17.7.4 |
link, 21.4.2 | undisplay all, 3.6.3.1 |
load sequence, 21.4.1 | stach, 9.20.15 |
sequence conservation, 21.4.3 | virtual, 13.1, 13.1.1, 13.1.2, 21.9, 21.11.1 |
tutorials, 21 | ligand screening, 15 |
two, 10.3.24, 22.8.6 | screen, 13.3, 13.4 |
ubuntu, 22.1.18 | screening, 13, 13.2 |
ultra large library, 13.5 | examples, 21.11 |
unclip, 6.3.10, 6.13.1 | virus, 5.3.3 |
undisplay, 4.1.4, 6.1.7, 22.2.10, 22.2.32 | visualize, 10.29 |
box shade font, 8.7.7.1 | apf fields, 16.3.11 |
undisplay-all, 3.6.3.1 | chemical space, 10.29 |
origin, 6.8.12 | ligand strain, 16.3.10 |
undo, 3.6.2.9, 4.7, 10.4.11, 16.5.5 | vls, 12.2, 12.2.3, 13, 13.1, 13.1.6, 13.1.7.2, 13.1.9.6, 13.3, 21.11.2, 22.5.7, 22.5.8, 22.5.24 |
redo, 16.5.5 | analysis, 13.1.9.6 |
uniprot, 4.2.6, 8.5 | display, 13.1.9.5 |
unique, 10.3.28, 10.32 | command line, 13.1.7.2 |
unit, 5.3.3 | getting started, 13.1.2 |
units, 22.5.1 | histogram, 13.1.9.3 |
unix, 22.10.2 | scatter plot, 13.1.9.2 |
preferences, 13.1.4 | |
results, 13.1.8 | |
run, 13.1.6 | |
scatterplot, 13.1.9.4 | |
score, 12.1.1.4 | |
visualization, 13.1.10 | |
results, 13.1.8 | |
volume, 10.4.9 | |
water, 9.20.17 | |
waters, 9.20.17 | |
wavefront, 3.7.6, 6.3.11, 6.7 | |
weak, 22.4.20 | |
web, 21.2 | |
browser, 3.6.1.12 | |
weight, 10.11, 22.8.7, 22.8.10 | |
weighted, 17.7.1 | |
width, 17.1.22 | |
window, 4.1.13 | |
windows, 4.1.13.1, 10.10.1 | |
wire, 3.7.1, 4.7.5, 6.1.1, 22.2.4, 22.2.21 | |
wireBondSeparation, 4.7.1 | |
working directory, 22.5.23 | |
workspace, 4.1.4, 5.1.3.1, 10.7.2 | |
panel, 4.1.4 | |
selection, 4.6.9 | |
navigation, 4.6.10 | |
write, 4.1.14, 4.5, 17.4.21, 22.9.4, 22.9.7 | |
alignment, 8.7.3 | |
excel, 10.2.3 | |
image, 3.6.1.15, 22.1.20 | |
images, 6.15 | |
pdb, 4.5 | |
image, 3.6.1.15 | |
object, 4.1.9 | |
picture, 3.6.1.15 | |
project, 3.6.1.8, 4.1.10 | |
table, 17.1.3 | |
writing a pdb file, 22.4.3 | |
ray, 3.6.5 | |
xi, 6.8.5, 22.2.18 | |
xls, 10.2.3 | |
xlsx, 10.2.3 | |
xml, 19.2 | |
xstick, 6.1.2, 22.2.21 | |
xyz, 22.2.10 | |
youtube, 2 | |
zoom, 4.1.3, 6, 6.12, 6.12.4, 10.3.30, 17.4.17 | |
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