|
Sep 4 2023
Feedback.
|
Index
| 2D, 6.8.8, 10.3.24, 10.3.28, 10.14, 10.18.2, 10.18.4 | Clash Threshold, 4.7.10 |
| Interaction Diagram, 16.3.7 | DNA, 4.3, 8, 8.3.3 |
| bioisostere, 10.9.1 | Decomposition, 10.34.3 |
| from PDB, 10.1.1 | Display, 22.2.26 |
| screening, 15 | Distance, 13.1.9.6 |
| to 3D, 10.18, 10.18.3 | Dock Directory, 4.7.2 |
| depiction, 10.18.2 | Docking, 22.2.26 |
| 3D, 6.6, 6.8.8, 10.1.3, 10.3.24, 10.3.28, 10.3.31, 10.18.2, 21.2 | Drug Bank, 4.2.8 |
| QSAR, 10.37.4, 11.4, 21.14 | Editor, 4.7.2 |
| chemical, 10.4.16, 10.18.1 | Eintl, 12.1.1.8 |
| interactive ligand editor, 3.7.5 | Error in saving configuration settings: You are not a license administrator, 22.1.10 |
| ligand editor, 16.3.4 | FILTER.Z, 4.7.2 |
| object, 6.3.9 | gz, 4.7.2 |
| pharmacophore, 13.3, 16.3.11 | uue, 4.7.2 |
| print, 6.7 | FTP.createFile, 4.7.11 |
| printing, 6.7 | keep File, 4.7.11 |
| screening, 15 | proxy, 4.7.11 |
| stereo, 6.6 | Filter.zip, 4.7.2 |
| 3DQsar, 11.4 | Force Auto Bond Typing, 4.7.11 |
| 3D_Similarity_PDB_Search, 5.7 | Formula, 22.8.7, 22.8.10 |
| 3Dqsar tutorial, 21.14 | Free Wilson, 10.34.2 |
| bioisostere, 10.9.2 | Frequently Asked Questions, 22 |
| predict, 5.6 | GAMESS, 9.20.16 |
| helices strands, 5.6.1 | GIF, 3.6.1.15, 6.16, 6.16.2 |
| local flexibility, 5.6.4 | GPCR Modeling Example, 21.5.1 |
| protein health, 5.6.3 | GRAPHIC.store Display, 4.7.3 |
| tools identify ligand binding pocket, 5.6.6 | NtoC Rainbow, 4.7.4 |
| oda, 5.6.5 | alignment Rainbow, 4.7.4 |
| 4D, 12.2.2, 21.12.1 | atomLabelShift, 4.7.7 |
| dock, 16.15 | ballStickRatio, 4.7.1 |
| docking, 4.2.2 | center Follows Clipping, 4.7.3 |
| 64, 22.1.3 | clash Style, 4.7.3 |
| APF, 10.36.3, 10.37.4, 11.4, 15, 15.6, 21.14 | clashWidth, 4.7.3 |
| template, 10.36 | clip Grobs, 4.7.3 |
| ActiveICM, 3.6.1.12 | Skin, 4.7.3 |
| Area, 22.2.26 | Static, 4.7.3 |
| Atom Single Style, 4.7.3 | discrete Rainbow, 4.7.4 |
| Atomic Property Fields, 11.4, 21.14 | displayLineLabels, 4.7.7 |
| Bad Groups, 22.8.7, 22.8.10 | displayMapBox, 4.7.3 |
| Baell, 10.4.9 | distance Label Drag, 4.7.1 |
| Beep, 4.7.11 | dnaBallRadius, 4.7.9 |
| Blast, 22.2.25 | dnaRibbonRatio, 4.7.9 |
| BlastDB Directory, 4.7.2 | dnaRibbonWidth, 4.7.9 |
| alphas, 6.8.3 | dnaRibbonWorm, 4.7.9 |
| COLLADA, 3.6.1.7 | dnaStickRadius, 4.7.9 |
| CPK, 3.7.1 | dnaWormRadius, 4.7.9 |
| ChEMBL, 4.2.3, 10.1 | font Scale, 4.7.7 |
| Chemical Cluster, 21.6.3 | fontColor, 4.7.7 |
| Search, 21.6.2 | fontLineSpacing, 4.7.7 |
| CisTransAmide Angle, 13.1.9.6 | grobLineWidth, 4.7.3 |
| Style, 4.7.1 | splash Screen Delay, 4.7.11 |
| hbondAngleSharpness, 4.7.1 | Image, 4.7.11 |
| hbondMinStrength, 4.7.1 | table Row Mark Colors, 4.7.4 |
| hbondStyle, 4.7.1 | workspace Folder Style, 4.7.4 |
| hbondWidth, 4.7.1 | workspaceTabStyle, 4.7.4 |
| hetatmZoom, 4.7.1 | HBA, 22.8.7, 22.8.10 |
| hydrogenDisplay, 4.7.1 | HBD, 22.8.7, 22.8.10 |
| light, 4.7.3 | HTTP.proxy, 4.7.11 |
| lightPosition, 4.7.3 | support Cookies, 4.7.11 |
| mapLineWidth, 4.7.3 | user Agent, 4.7.11 |
| occupancy Radius Ratio, 4.7.3 | Hbond to selection, 13.1.9.6 |
| occupancyDisplay, 4.7.3 | Hbonds, 16.3.4 |
| quality, 4.7.3 | How To Guide, 3 |
| rainbow Bar Style, 4.7.4 | Html, 4.2.1.6 |
| resLabelDrag, 4.7.7 | Http Read Style, 4.7.11 |
| resize Keep Scale, 4.7.3 | Hydrogen.bond, 4.7.5 |
| ribbonRatio, 4.7.9 | ICM Browser How To, 3.1 |
| ribbonWidth, 4.7.9 | Pro How To, 3.2 |
| ribbonWorm, 4.7.9 | graphics crash, 22.1.11 |
| rocking, 4.7.4 | start, 1 |
| Range, 4.7.4 | IMAGE.bondLength2D, 4.7.6 |
| Speed, 4.7.4 | color, 4.7.6 |
| selectionStyle, 4.7.3 | compress, 4.7.6 |
| site Label Drag, 4.7.7 | gammaCorrection, 4.7.6 |
| Shift, 4.7.7 | generateAlpha, 4.7.6 |
| siteArrow, 4.7.7 | lineWidth, 4.7.6 |
| stereoMode, 4.7.3 | lineWidth2D, 4.7.6 |
| stickRadius, 4.7.1 | orientation, 4.7.6 |
| surfaceDotDensity, 4.7.3 | paper Size, 4.7.6 |
| surfaceDotSize, 4.7.3 | previewResolution, 4.7.6 |
| surfaceProbeRadius, 4.7.3 | previewer, 4.7.6 |
| transparency, 4.7.3 | print, 4.7.6 |
| wire Width, 4.7.1 | printerDPI, 4.7.6 |
| wormRadius, 4.7.9 | scale, 4.7.6 |
| xstick Backbone Ratio, 4.7.1 | stereoAngle, 4.7.6 |
| Hydrogen Ratio, 4.7.1 | stereoBase, 4.7.6 |
| Style, 4.7.1 | stereoText, 4.7.6 |
| Vw Ratio, 4.7.1 | INCHI, 10.18.3 |
| GROB.arrowRadius, 4.7.3 | IQR, 17.4.6 |
| atomSphereRadius, 4.7.3 | ISIS, 22.8.3 |
| contourSigmaIncrement, 4.7.3 | Icm Prompt, 4.7.10 |
| relArrow Size, 4.7.3 | InChi, 10.3.20, 10.4.12, 10.18.3 |
| relArrowHead, 4.7.3 | key, 10.3.20 |
| GUI.auto Save, 4.7.4 | Interaction Diagram 2D, 16.3.7 |
| Interval, 4.7.4 | Internal Coordinates Table, 9.20.13 |
| autoSave, 22.2.33 | Directory, 4.7.2 |
| autoSaveInterval, 22.2.33 | JPEG, 3.6.1.15 |
| enumeration Memory Limit, 4.7.11 | KMZ, 3.6.1.7 |
| max Nof Recent Files, 4.7.11 | Log Directory, 4.7.2 |
| Sequence Length, 4.7.4 | LogP, 11, 17.6 |
| MD, 14 | Homology, 3.6.2.15 |
| MOL, 10, 10.3.3, 10.3.24, 10.3.25, 10.3.26, 10.3.27, 13.1.3, 17.2 | Identity, 3.6.2.14 |
| MOL2, 13.1.3 | Sequence, 3.6.2.16 |
| MOLT, 18.1 | convert, 5.1.2 |
| MOVIE.frame Grab Mode, 4.7.4 | PFAM, 3.6.1.7 |
| MPO, 10.32 | PLOT.Yratio, 4.7.8 |
| Mac, 22.1.15 | color, 4.7.8 |
| Atom Margin, 4.7.10 | date, 4.7.8 |
| Sigma Level, 4.7.10 | draw Tics, 4.7.8 |
| Markush, 21.6.9 | font, 4.7.8 |
| create, 21.6.7 | fontSize, 4.7.8 |
| File Size Mb, 4.7.11 | labelFont, 4.7.8 |
| Max_Fused_Rings, 10.11 | lineWidth, 4.7.8 |
| Mnconf, 4.7.10 | logo, 4.7.8 |
| Model, 11.4 | markSize, 4.7.8 |
| MolCart, 22.9 | orientation, 4.7.8 |
| MolIPSA, 22.8.7, 22.8.10 | paper Size, 4.7.8 |
| MolLogP, 22.8.7, 22.8.10 | previewer, 4.7.8 |
| MolLogS, 22.8.7, 22.8.10 | rainbowStyle, 4.7.8 |
| MolPSA, 10.11 | seriesLabels, 4.7.8 |
| MolScreen, 15 | PLS, 11.1 |
| MolVol, 10.11 | PNG, 3.6.1.15, 4.1.14, 6.16, 6.16.2 |
| Molcart, 10.5.3 | PROTAC, 12.8 |
| MoldHf, 10.11, 22.8.7, 22.8.10 | Pharmacophore RMSD, 13.1.9.6 |
| Movie.fade Nof Frames, 4.7.4 | PowerPoint, 21.2, 22.3 |
| quality, 4.7.4 | Projects Directory, 4.7.2 |
| Auto, 4.7.4 | Prosite Dat, 4.7.2 |
| NCBI, 22.2.25 | Protein, 22.2.26 |
| NVIDIA, 22.1 | Viewer, 4.7.2 |
| Nof_Atoms, 10.11 | Pub Chem, 4.2.9 |
| Nof_Chirals, 10.11 | PubMed, 4.2.1.7 |
| Nof_HBA, 10.11 | Reference, 17.1.40 |
| Nof_HBD, 10.11 | Pubchem, 4.2.9 |
| Nof_Rings, 10.11 | QSAR, 11, 11.1, 17.6, 21.14 |
| Nof_RotBonds, 10.11 | R, 10.8, 10.34.1 |
| Non-overlap, 13.1.9.6 | and S, 22.5.21 |
| Nvidia GL failutre, 22.1.11 | R-Group, 10.34.3 |
| ODA, 22.2.26 | R-groups, 16.5.3 |
| Optimal, 22.2.26 | REAL, 10.5.5 |
| Output Directory, 4.7.2 | RMSD, 5.4.2 |
| PAINS, 10.4.9, 10.11.3 | RNA, 4.3 |
| chemicals, 10.4.9 | RTCNN, 12.1.1.4, 12.1.13.1 |
| PCA, 11.1, 11.5, 21.6.4 | Ramachandran Plot, 5.5.9 |
| analysis, 10.27 | Real Format, 4.7.10 |
| PDB, 4.2.1.6, 5.1.2, 5.3.3, 5.7, 8.1, 10.1.1, 16.18 | Label Shift, 4.7.7 |
| Directory, 4.7.2 | Style, 4.7.7 |
| Style, 4.7.2 | RotB, 22.8.7, 22.8.10 |
| link, 17.1.40 | SALI, 10.34.5, 21.6.11 |
| Search, 3.6.2.12, 3.6.2.13, 3.6.2.14, 3.6.2.15, 3.6.2.16 | SAR, 11, 15.6, 17.4.25, 17.6 |
| Field, 3.6.2.13 | table, 10.34.3, 21.6.9 |
| SCORE, 22.5.6, 22.5.17 | new data, 10.3.7 |
| SDF, 10, 10.3.24, 10.3.25, 10.3.26, 10.3.27, 13.1.3, 17.2 | to table, 16.5.7 |
| SEQUENCE.site Colors, 4.7.4 | adding fragment, 10.4.8 |
| SITE.label Style, 4.7.7 | in editor, 10.4.8 |
| labelOffset, 4.7.7 | adjust row height, 22.2.39 |
| wrap Comment, 4.7.7 | administration, 10.10.5 |
| SLIDE.ignore Background Color, 4.7.4 | advanced alignment selection, 8.7.14 |
| Fog, 4.7.4 | alanine, 12.2.4 |
| SMILES, 10.1.2, 10.2.4, 10.4.12 | album, 6.15.3 |
| Score, 12.1.1.4 | alias, 10.4.5 |
| Select Min Grad, 4.7.10 | align, 4.1.11, 10.14 |
| Show Res Code In Selection, 4.7.7 | color 2D scaffold, 10.14 |
| Smiles, 22.8.7, 22.8.10, 22.8.11 | dna protein, 8.6.4 |
| SureChEMBL, 4.2.4 | multiple, 8.6.5 |
| Swissprot, 3.6.1.7 | sequence structure, 8.6.3 |
| Dat, 4.7.2 | two sequences, 8.6.2 |
| link, 17.1.40 | DNA to protein, 8.6.4 |
| Temp Directory, 4.7.2 | sequence, 8.6, 8.6.6 |
| USER.email, 4.7.11 | two sequences, 8.3.5, 8.6.2 |
| friends, 4.7.11 | alignment, 8.3.8, 8.6.1, 8.7.7, 8.7.7.1, 8.7.16, 8.8, 10.36.1, 10.36.2, 21.4.4, 22.4.12, 22.6, 22.6.2 |
| full Name, 4.7.11 | annotation tutorial, 21.4.4 |
| organization, 4.7.11 | box shade font, 8.7.7 |
| phone, 4.7.11 | editing, 8.7.1 |
| Uniprot, 17.1.40 | editor, 8.7 |
| VHL, 12.8 | example, 8.3.14 |
| VLS, 13.1, 13.1.1, 13.1.2, 13.1.9.2 | font size, 22.2.1 |
| preferences, 13.1.4 | format, 8.7.11 |
| Van Drie, 10.34.5 | gaps, 8.7.11 |
| Label Style, 4.7.7 | image, 8.7.2 |
| Volume, 22.8.7, 22.8.10 | profile, 21.4.4 |
| Change, 13.1.9.6 | reorder, 8.3.12 |
| Water Radius, 4.7.10 | search, 8.7.12 |
| Wilson, 10.34.2 | secondary, 21.4.4 |
| Wire Style, 4.7.1 | structure, 8.7.16, 22.6.2 |
| XPDB Directory, 4.7.2 | selection, 8.7.13 |
| Xstick, 3.7.1 | strength, 8.3.8 |
| a-bright, 3.7.2 | profile, 8.3.8 |
| about model, 11.1.1 | view options, 8.7.10 |
| acceptor, 10.4.9, 10.37.1 | color, 8.7.9 |
| active, 7.7, 22.3.3 | comment, 8.7.6 |
| activeICM, 7.8 | consensus, 8.7.9, 8.7.14 |
| activeicm, 7.7, 7.12, 7.14, 7.14.1, 22.3 | cut, 8.3.11 |
| advanced, 7.14 | display title, 8.7.10 |
| background images, 7.15 | editor, 8.7 |
| control, 7.13 | extract, 8.3.10 |
| activeicmjs, 7.16 | gaps, 8.7.11 |
| activity, 11, 17.6 | horizontal scroll, 8.7.10 |
| cliff, 10.34.5, 10.34.6, 21.6.11 | image, 8.7.2 |
| tutorial, 21.6.11 | multiple, 8.3.7, 8.6.5 |
| add database, 10.10.3 | options, 8.7.10 |
| reorder, 8.3.12 | alignment, 10.36.3 |
| ruler, 8.7.10 | apf3Dqsa, 22.8.12 |
| save, 8.7.2 | append, 17.1.44 |
| search, 8.7.12 | table, 17.1.44 |
| selection, 8.7.13, 8.7.14 | rows, 3.6.10.7 |
| sequence offset, 8.7.10 | applying prediction models, 11.2 |
| table, 8.7.10 | area, 5.5.3, 5.6.5, 12.7, 12.7.2, 12.7.3, 21.3.5 |
| view, 8.7.10 | aromatic, 10.3.28, 10.37.1 |
| alignments, 8.6, 21.4 | arrange, 4.1.13.1 |
| allosteric, 5.6.6 | window, 4.1.13.1 |
| alpha, 3.7.2 | graph, 22.2.8 |
| channel, 4.7.6 | as2_graph, 4.6.5 |
| ambient, 3.7.2 | as_graph, 22.2.8 |
| amidinium, 10.15 | asparagine, 9.20.2 |
| amino acid, 4.3 | assign, 6.1.3 |
| acids, 10.4.6 | 2D coordinates, 10.18.2 |
| anaglyph, 6.6, 22.1, 22.1.8 | helices, 5.6.1 |
| stereo faq, 22.1.8 | strands, 5.6.1 |
| analysis, 3.6.4, 8.3 | atom, 4.7.5, 10.3.28, 22.2.4, 22.2.5, 22.2.8, 22.2.16, 22.2.17, 22.4.10 |
| angle, 5.5.7, 5.5.8, 6.8.5, 6.9, 6.12.6, 22.2.18, 22.4.16 | charge, 22.4.21 |
| angstrom, 22.4.7 | atomLabelStyle, 4.7.7 |
| animate, 3.6.3.15, 6.10.7 | atomic energy circles, 16.3.5 |
| view, 6.10.7 | property field, 10.36.1, 10.36.2, 16.3.11 |
| animation, 6.10.7.1, 6.10.7.2, 6.10.7.3, 6.10.7.4 | score, 10.37.2 |
| store, 6.10.7.4 | fields, 5.4.6, 10.37, 10.37.1, 10.37.3, 13, 21.8 |
| animations, 7 | attachment, 10.4.3, 10.5.1 |
| annotate, 4.6.21, 10.13 | point, 10.33.4 |
| alignment, 8.7.6 | author, 4.2.1.3 |
| by substructure, 10.13 | close tree, 10.26.5 |
| plot, 17.4.24 | play slide, 7.13 |
| annotation, 8.7.6 | autofit, 12.5 |
| antialias, 3.6.1.15, 3.6.3.10 | autosave, 22.2.33 |
| lines, 3.6.3.17 | available properties, 10.11.1 |
| lines, 3.6.3.17 | ave, 17.7.1 |
| apf, 5.4.6, 10.36.1, 10.36.2, 10.37, 11, 12.3, 13, 13.1.9.7, 13.3, 13.4, 16.3.11, 16.17, 21.8, 21.8.1, 21.8.2, 21.8.3, 21.8.4, 21.8.5, 22.8.12 | avi, 6.16, 6.16.2 |
| flexible template, 10.36.2 | axes, 17.4.15 |
| pairwise, 10.36.1 | axis, 17.4.11 |
| super, 10.36 | options, 17.4.10 |
| template, 16.12.3 | grid, 17.4.10 |
| tools, 10.37 | range, 17.4.10 |
| 3DQSAR, 10.37.4 | title, 17.4.10 |
| consensus ph4, 10.37.1 | b-factor, 5.6.4, 21.3.10 |
| pairwise score, 10.37.2 | coloring scale, 22.2.38 |
| screen, 10.37.3 | backbone, 6.1.10, 22.2.13 |
| tutorial, 21.8 | background, 6.4.2, 6.4.3 |
| cluster, 21.8.5 | color shortcut, 22.2.2 |
| consensus, 21.8.2 | images activeicm, 7.15 |
| score, 21.8.3 | image, 6.4.3 |
| screen, 21.8.4 | backup, 3.6.2.11 |
| superposition, 21.8.1 | bad, 10.11 |
| ball, 4.7.5 | hydrogens, 9.20.5 |
| and stick, 3.7.1 | buried molSurface, 13.1.9.6 |
| balloon, 17.4.26 | buttons, 7.14 |
| bases, 10.4.6 | bye, 3.6.1.19 |
| basicsel, 4.6.2 | alpha, 6.1.10 |
| batch, 12.1.10, 12.7.9 | trace, 6.1.10 |
| file, 12.1.10.2 | ca-trace, 6.1.10 |
| index, 12.1.10.4 | cache, 7.14.1 |
| loaded icm object, 12.1.10.1 | calculate, 10.11, 22.5.2 |
| mol mol2, 12.1.10.3 | properties, 10.11 |
| molcart, 12.1.10.5 | sequence similarity, 8.7.15 |
| run, 12.1.11 | startup, 22.10.2 |
| bayesian classifier, 11 | carbon, 22.2.4, 22.2.5 |
| bbb, 10.11.4 | carboxylic acid, 10.15 |
| beep, 22.2.35 | cartesian, 10.21 |
| begin docking simulation, 12.1.8 | cavities, 5.5 |
| best, 10.3.34 | closed, 5.5.4 |
| bicyclics, 10.4.6 | ccp4, 22.2.27, 22.2.28 |
| binding, 21.5.3, 22.2.14, 22.5.2, 22.5.10 | cell, 5.3.2 |
| properties, 6.3.1 | center, 3.6.3.20, 4.1.3, 6.12, 6.12.5, 16.3.13, 17.1.40, 22.4.22 |
| bioinfo align multiple, 8.3.7 | on ligand, 16.3.13 |
| two sequences, 8.3.5 | and representative members, 17.7.2 |
| links, 8.3.9 | cereblon, 12.8 |
| menu, 3.6.4 | chain.breaks, 22.2.34 |
| secondary structure, 8.3.2 | chair, 22.5.20 |
| translation, 8.3.3 | change box size, 16.9.1 |
| bioisoester, 10.9 | height of all rows, 17.1.7 |
| bioisostere, 10.9, 10.9.1, 10.9.2, 16.8 | ligand, 16.5.1 |
| biological, 5.3.3 | row height, 17.1.7 |
| biomolecule, 3.6.5, 5.3.3, 21.3.8, 21.3.12 | selection, 4.6.7 |
| bit, 22.1.3 | speed range, 6.10.7.2 |
| blast, 4.2.5, 8.4 | changing font in alignment editor, 8.7 |
| search, 4.2.5 | charge, 3.6.3.21, 5.1.3, 5.1.3.1, 5.1.3.2, 6.8.2, 10.4.3, 10.5.1, 10.7.1, 10.7.2, 10.7.3, 10.37.1, 13.1.9.6, 22.4.1 |
| blood brain barrier, 10.11.4 | groups, 12.1.6, 22.5.22 |
| blue lines, 8.2 | check box, 7.6.6 |
| boat, 22.5.20 | convert, 22.8.5 |
| bond, 5.1.3, 5.2.3, 5.2.3.1, 5.2.3.2, 9.9, 10.4.10, 22.4.1, 22.8.7, 22.8.10 | export excel, 10.2.3 |
| covalent, 22.4.2 | save, 10.2 |
| type, 5.1.3.1, 5.1.3.2, 10.7.1, 10.7.2, 10.7.3 | 3D, 10.2.5 |
| bonding, 6.1.8 | editor, 10.2.4 |
| preferences, 4.7.1 | image, 10.2.6 |
| box, 4.7.7, 6.8.15, 8.7.7, 8.7.7.1, 22.5.9 | table, 10.2.2 |
| alignment, 21.4.4 | super, 10.35 |
| size, 16.9.1 | view, 10.3.28 |
| browse, 10.3.31, 12.1.12.1, 19.4 | chembl, 4.2.3, 4.2.4 |
| mode, 10.3.31 | chemical, 10, 10.3.28, 10.3.30, 10.3.31, 10.3.34, 10.3.35, 10.4.10, 10.8, 10.10.4, 10.11.3, 10.18.2, 10.22, 10.33.4, 10.33.5, 10.35, 10.36.1, 10.36.2, 17.7.1, 21.6.4, 22.8.4, 22.8.5, 22.8.7, 22.8.8, 22.8.9, 22.8.10 |
| molt, 18.2 | clustering, 10.26, 10.26.6 |
| stack, 9.20.15 | descriptors, 22.8.15 |
| build, 6.10.7.1 | dictionary, 10.4.4, 10.4.5, 10.4.6 |
| homology model, 9.1.2 | draw, 21.6.1 |
| edit buttons, 10.4.11 | tutorials, 21.6 |
| editor, 10.4, 10.4.8 | chemistry, 10.22, 22.8 |
| not starting, 22.1.13 | convert, 10.18 |
| fingerprint, 15 | 2dto3d, 10.18.1 |
| fingerprints, 22.8.15 | pca, 10.27 |
| fragments, 10.3.33 | smiles, 10.18.3 |
| group, 10.4.5 | duplicates, 10.31 |
| groups, 10.4.5, 10.4.8 | remove.redundant, 10.31 |
| modifiers, 10.33.2 | chemlib.so, 22.1.3 |
| properties, 21.6.4 | chemspace append, 21.6.4.4 |
| right click, 10.4.3 | build visualize, 21.6.4.1 |
| search, 10.5, 13.4 | compare, 21.6.4.8 |
| filter, 10.5.2 | delete row, 21.6.4.3 |
| text, 10.5.4 | distinguish, 21.6.4.7 |
| sketch, 21.6.1 | export, 21.6.4.5 |
| space, 10.28 | project, 21.6.4.6 |
| spreadsheet, 4.2.3, 10.1.3, 10.3.1, 10.4.14, 21.6.1, 22.8.13 | select, 21.6.4.2 |
| compare, 10.3.22 | chi, 6.8.5, 22.2.18 |
| template, 10.3.2 | chiral, 10.23, 12.1.1.5 |
| spreadsheets, 10.3 | chirality, 10.23, 12.1.1.5 |
| substituent, 10.9 | considerations, 12.1.1.5 |
| substructure, 4.2.1.1 | chrome, 22.3 |
| table, 16.10, 22.8.11 | cis trans proline, 21.5.2 |
| display, 10.3.3 | clash, 4.7.5, 6.8.14 |
| tables, 17.2 | volumes, 13.1.10 |
| toxicity, 10.11.3 | classes, 10.3.28 |
| 2D, 10.7 | classification model, 15.5 |
| 3D, 10.7 | clear display and planes, 3.6.3.2 |
| append, 10.4.13 | selection, 4.6.6 |
| clustering, 10.26, 10.26.1 | planes, 3.6.3.2 |
| convert, 5.1.3, 5.1.3.1, 5.1.3.2, 9.20.1, 10.7, 10.7.1, 10.7.2, 10.7.3, 22.4.1 | click, 4.1.12, 6.11, 6.12 |
| display.fit, 22.8.13 | clip, 6.3.10, 6.13.1, 22.2.11 |
| draw, 10.4.1 | clipboard, 6.15.3, 17.7.3 |
| duplicates, 10.3.21 | clipping, 22.2.19 |
| editor, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6 | planes, 6 |
| load, 10.1 | tool, 6.13 |
| merge, 10.30 | tools, 6.13 |
| new, 10.4.1 | clone, 3.6.1.2 |
| properties, 10.3.19 | close, 6.3.3, 6.3.4, 16.20 |
| query, 10.4.3, 10.5.1, 10.5.3 | downstream cluster, 10.26.5 |
| read, 10.1 | project, 16.20 |
| save, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6, 10.4.13 | cavities, 5.6.6 |
| search, 10.4.3, 10.5, 10.5.1, 10.5.3 | cloud, 13.1.7, 13.1.7.2 |
| similarity, 10.4.3, 10.5, 10.5.1, 10.5.3 | cluster, 13.1.7, 13.1.9.7, 17.7.1 |
| spreadsheet, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6, 10.3 | representative.center, 10.26.2 |
| structure, 10.4.13 | clustering, 17.7, 21.6.3 |
| superimpose, 10.35.1, 10.35.2, 10.35.3 | cns, 10.32 |
| superposition, 10.36, 10.36.3 | collada, 3.7.6, 6.3.7 |
| table, 10.3, 17.2 | color, 5.6.3, 6.3.2, 6.3.3, 6.3.4, 6.3.9.4, 6.4, 6.4.1, 6.8.2, 6.8.3, 8.8, 10.3.35, 10.14, 17.1.45, 17.7.4, 22.2.4, 22.2.5, 22.2.16, 22.2.20 |
| cheminformatics, 10, 10.3, 22.8 | alignment, 8.7.9 |
| by, 6.4 | connect, 6.3.9.1, 6.12, 6.12.7 |
| alignment, 8.8 | object, 6.12.7 |
| chemical, 10.3.35 | connectivity, 10.4.3, 10.5.1 |
| faq, 22.2.20 | consensus, 10.37, 21.8.2 |
| key, 22.2.38 | pharmacophore, 10.37.1 |
| scale, 22.2.38 | construct, 3.6.1.1, 6.10.7.1 |
| surface by proximity, 6.3.3 | molecule, 3.6.1.1 |
| selection, 6.3.4 | object, 3.6.1.1 |
| table, 10.3.27 | contact, 5.5, 5.5.3, 21.3.5 |
| 2D sketch, 10.5.6.5 | surface, 6.3.2 |
| background, 3.6.3.18, 6.4.2 | contacts, 6.3.3, 6.3.4, 10.6, 13.1.9.8, 16.3.12 |
| distance, 6.8.10 | contour, 5.3.6, 5.3.7 |
| mesh, 6.3.9.3 | convert, 5.1.2, 10.18.1, 10.18.5, 22.8.5 |
| table, 10.3.27 | chemical, 10.3.24 |
| coloring, 6.4.1 | 2D 3D, 10.7 |
| column, 17, 17.1.6, 17.1.22, 17.1.25, 17.1.39, 17.1.40, 17.4, 17.4.1, 22.8.7 | 3D molecular editor, 10.4.16 |
| annotation, 17.1.41 | from pdb, 5.1.3 |
| order, 17.1.29 | local database, 3.6.1.6 |
| plot, 17.4.6 | pdb, 21.3.2 |
| row width, 17.1.22 | chem, 10.7.1 |
| statistics, 17.1.32 | smiles to 2D, 22.8.11 |
| visibility order, 17.1.28 | local.database, 3.6.1.6 |
| color, 17.1.10 | smiles, 10.18, 10.18.3, 10.18.4 |
| hide, 10.3.8 | converting pdb, 5.1.2 |
| show, 10.3.8 | coordinates, 10.1.3 |
| combinatorial chemistry, 10.33 | copy, 10.3.25, 10.4.11, 10.4.18, 10.5.6.2, 17.1.35 |
| library, 21.6.8 | cell, 17.1.36 |
| combine, 3.6.10.5 | chemical, 10.3.25 |
| display style, 4.7.9 | loop, 9.4 |
| command, 22.5.16 | paste row, 17.1.35 |
| line, 22.2.32 | row, 17.1.36 |
| commands, 22.10.1 | rows, 17.1.44 |
| compact tree, 10.26.5 | selection to table, 17.1.37 |
| compare, 10.3.29, 10.29, 10.30 | chemical, 10.3.16 |
| table, 10.3.22 | covalent, 16.10.1 |
| tables, 10.29 | bond, 5.6.2, 21.9.3 |
| compatible, 3.6.1.10 | docking, 12.4, 12.4.1, 16.16, 21.9.3 |
| complex, 10.6, 13.1.9.5 | tutorial, 21.9.3 |
| compound, 4.2.1.3, 10.22, 17.2 | cpk, 6.1.5, 22.2.21 |
| compounds, 22.9.3 | crash, 3.6.2.11 |
| compress, 4.7.6 | creat, 7.6.1 |
| compressed, 17.1.6 | create, 17.1.1 |
| table view, 17.1.6 | markush, 10.33.3 |
| conditions, 10.5.2 | new objects, 4.3 |
| gen, 10.21 | cross, 22.2.10 |
| configuration error, 22.1.19 | section, 6.13 |
| conformation, 10.21, 12.2.2 | cryptic, 5.6.6 |
| conformational entropy, 10.25 | crystal, 5.3.2 |
| conformations, 22.9.8 | crystallographic analysis, 5.3 |
| conformers, 10.21 | biomolecule, 5.3.3 |
| convert2grid, 5.3.7 | depth, 6.3.12, 6.10.5 |
| crystallographic cell, 5.3.2 | deselect, 22.2.7 |
| load eds, 5.3.4 | design loop, 9.3, 9.20.10 |
| maps cell, 5.3.5 | deviation, 22.4.7 |
| symmetry packing, 5.3.1 | dfa, 15.3.3 |
| tools, 21.3.8 | dfz, 15.3.2 |
| cell, 3.6.5 | dialog, 7.6.5 |
| neigbor, 5.3.1 | diffuse, 3.7.2 |
| neighbors, 3.6.5 | dihedral, 5.5.8, 6.8.5, 22.2.18 |
| crystallography, 5.3.4, 5.3.6, 5.3.7, 22.2.27, 22.2.28 | angle, 5.5 |
| csv, 10.2.3, 17.1.2, 17.1.3, 17.1.21, 19.2 | dimensional, 22.8.6 |
| current, 22.2.22 | directories preferences, 4.7.2 |
| slide, 7.13 | directory, 4.7 |
| curves, 17.4.5 | disappearing labels, 22.1.12 |
| custom, 6.12, 10.3.3, 10.35 | dislay ligand receptor interaction, 10.6 |
| actions, 17.1.40 | display, 4.1.4, 4.1.13.1, 4.7, 5.2.3, 5.2.3.1, 5.2.3.2, 6.8.14, 6.14, 10.23, 12.1.6.3, 22.2.4, 22.2.5, 22.2.8, 22.2.10, 22.2.11, 22.2.17, 22.2.21, 22.2.30, 22.2.32, 22.4.10, 22.4.11, 22.4.20, 22.8.4 |
| fragments, 10.13 | delete distances, 6.9.4 |
| label, 6.8.8 | dihedral, 6.9.3 |
| rotation, 6.12.2 | distance restraints, 6.8.13 |
| customized MPO score, 10.32.1 | distance2, 6.9.1 |
| cut, 17.1.35 | angles, 6.9 |
| vertical alignment block, 8.3.11 | formal charge, 6.1.9 |
| cyclic peptide, 9.19 | gradient, 6.8.16 |
| cys, 5.6.2 | hbond, 13.1.9.5 |
| cysteine reactivity, 5.6.2 | hbonds, 13.1.9.6, 16.3.4 |
| damaged skin, 22.1.12 | hydrogen, 6.1.7 |
| dash, 22.2.12 | atoms ligand editor, 16.3.3 |
| database, 8.4, 10.10, 10.33.4, 13.1.3, 13.1.6, 18.1, 19 | mesh, 6.3.5 |
| file format, 13.1.3 | meshes, 6.3.8 |
| search and alignment, 8.4 | options, 16.3 |
| databases, 22.9.3 | planar angle, 6.9.2 |
| decompose.library, 21.6.9 | tab, 3.7.1, 22.2.16 |
| decomposition, 10.33.4, 10.34.1, 17.4.25 | tether, 6.8.12 |
| default, 4.1.13 | toggle, 6.8.15 |
| delete, 3.6.2.1, 4.6.6, 7.6.8, 22.4.9 | CPK, 6.1.5 |
| alignment, 8.7.5 | angle, 6.9.2 |
| all, 3.6.2.2 | chemical, 10.3.3 |
| column row, 17.1.38 | dihedral.angle, 6.9.3 |
| label, 6.8.9 | distance, 6.8.10, 6.8.13, 6.9.1 |
| alignment, 8.7.5 | electrostatic, 3.6.3.21 |
| all, 3.6.2.2 | energy.gradient, 6.8.16 |
| angle.label, 6.9.4 | hydrogen, 6.1.7 |
| column, 17.1.38 | polar, 6.1.7 |
| distance.label, 6.9.4 | macroshape, 6.3.6 |
| label, 6.8.9 | meshes, 6.3.5 |
| row, 17.1.38 | and display.macroshape, 3.7.6 |
| selection, 3.6.2.1 | molecule, 10.3.24 |
| tether, 9.20.5 | origin, 6.8.11 |
| dendrogram, 10.28.1 | potential, 3.6.3.21 |
| density, 5.3.4, 5.3.6, 5.3.7, 22.2.27, 22.2.28 | representations, 3.7.1 |
| ribbon, 6.1.3 | flexible.rings, 22.5.20 |
| skin, 6.1.4 | hitlist, 12.1.13 |
| status, 22.2.32 | interactive, 12.1.9 |
| surface, 6.1.6, 6.3.1 | preparation, 12.1.3 |
| surfaces, 3.7.6 | procedure, 12.1.8 |
| table, 10.3.3 | rank, 12.1.13 |
| tethers, 6.8.12 | results, 12.1.12, 12.1.12.1, 12.1.12.2, 12.1.13 |
| wire, 6.1.1 | sampling, 22.5.20 |
| xstick, 6.1.2 | score, 12.1.13 |
| distance, 5.5, 5.5.6, 6.8.10, 6.9, 10.29, 22.2.12, 22.4.8, 22.4.10 | stack, 12.1.12.2 |
| faq, 22.4.10 | template, 12.3 |
| restraint, 12.1.7 | document, 7.6.4, 7.6.5 |
| label, 4.7.7 | navigation, 7.6.7 |
| distances, 3.7.3 | documents, 6.15.3 |
| disulfide, 9.9, 9.16 | dollar, 22.10.3 |
| bonds, 9.16 | donator, 10.4.9 |
| diverse set, 17.7 | envelope, 3.7.1 |
| dock, 12, 12.1, 12.5, 16.10, 16.10.1, 21.9.3, 21.11.1, 21.11.2, 21.12.1, 22.5.3, 22.5.4, 22.5.5, 22.5.7, 22.5.8, 22.5.10, 22.5.11, 22.5.12, 22.5.13, 22.5.14, 22.5.15, 22.5.16, 22.5.21 | surface, 4.7.5 |
| apf, 16.17 | dotted line, 6.1.3 |
| chemical table, 12.1.15 | lines, 22.2.34 |
| command, 22.5.16 | double, 10.4.10 |
| macrocylce, 22.5.20 | doublet, 10.4.7 |
| table, 16.10 | download, 22.1.1, 22.9.3 |
| covalent, 16.10.1 | dpc, 15.3.4 |
| docked ligand strain, 12.1.1.8 | drag, 4.1.11, 4.7.7, 6.8.3, 7.6.4, 8.6.6, 22.4.5 |
| docking, 5.6.5, 12, 12.1.1, 12.1.2, 12.1.3, 12.1.16, 12.2, 12.2.1, 12.2.2, 12.2.3, 12.7, 12.7.1, 12.7.2, 12.7.3, 12.7.4, 12.7.5, 12.7.6, 12.7.8, 12.7.9, 12.7.10, 13.1, 13.1.1, 13.1.2, 13.1.6, 13.2, 16.10, 16.10.1, 16.11, 21.9, 21.9.1, 21.9.2, 21.11.3, 21.12, 21.12.2, 22.5, 22.5.1, 22.5.9, 22.5.17, 22.5.18 | and drop sequences, 8.6.6 |
| batch index, 12.1.10.4 | residue label, 3.6.3.16 |
| covalent, 12.4 | draganddrop, 4.1.11 |
| display, 12.1.17 | draw, 10.4.18, 10.33.5, 22.8.2 |
| explicit group, 21.12.2 | chemical, 10.4.1 |
| from table, 12.1.9.1, 12.1.9.2 | drop, 4.1.11, 7.6.4, 8.6.6, 22.4.5 |
| introduction, 12.1.1 | drug, 10.11, 22.8.7, 22.8.9 |
| macrocycles, 12.1.6 | bank, 4.2, 4.2.8, 10.1 |
| maps, 12.1.4, 12.1.5 | like, 10.11.4 |
| preferences, 12.1.6 | drugbank, 10.1 |
| database scan, 12.1.6.2 | druglikeness, 10.4.9 |
| display, 12.1.6.3 | dsPocket, 4.1.8 |
| general, 12.1.6.1 | dual alanine scanning, 12.2.4 |
| project, 13.1.5 | easy rotate, 3.6.3.12 |
| table, 13.1.5 | ecfp, 11.3 |
| results display, 12.1.17 | edit, 5.2.3.1, 16.5.8, 22.8.3 |
| setup, 22.5.13 | 2D, 16.5.1 |
| start, 12.1.3 | add sequence, 10.4.17 |
| steps, 12.1.2 | alignment, 8.7.1 |
| template, 12.3 | chemical moledit, 10.3.26 |
| templates, 16.12.3 | ligand, 16.5, 16.5.1 |
| tutorials, 21.9 | 2D, 16.5.1 |
| background, 22.5.19 | editor preferences, 16.2 |
| batch, 12.1.10 | multiple substituents, 16.5.2 |
| conformations, 22.5.20 | tools, 3.6.2.17 |
| molecular document, 7.6.1 | enumeration, 10.33.4 |
| molecule, 10.4 | eps, 10.2.6 |
| molt, 18.3 | epsilon, 22.4.15 |
| selection, 3.6.2.5 | eraser, 10.4.11 |
| slide, 7.4.1 | errno, 22.1.3 |
| table row, 17.1.24 | error, 22.1.3, 22.1.19, 22.2.35 |
| molecule, 10.3.26 | evaluate score strain, 16.4 |
| structure, 10.3.26 | exact, 10.29 |
| editor, 22.4.12 | excel, 10.2.3 |
| editpdbsearch, 3.6.2.12 | exclude fragment, 10.5.2 |
| eds, 5.3.4, 5.3.6, 5.3.7 | volume, 16.3.11 |
| effect of mutation, 9.14, 9.15 | exit, 3.6.1.19 |
| on binding tutorial, 21.5.3 | explicit, 10.3.28, 12.2.1 |
| example2, 21.5.3.1 | flex, 12.2.1 |
| stability tutorial, 21.5.4 | group, 12.2.3 |
| effort, 10.21, 10.35, 22.5.12 | docking, 12.2.3 |
| electron, 5.3.4, 5.3.6, 5.3.7, 22.2.27, 22.2.28 | groups, 21.12.2 |
| denisty map, 5.3.5 | export, 5.5.10, 19.4 |
| density map, 3.6.1.7, 3.6.5, 5.3.4, 5.3.6, 12.5 | dock project, 16.19 |
| contour, 3.6.5 | pdb, 4.5 |
| electrostatic coloring scale, 22.2.38 | extra windows, 6.2 |
| potential, 3.6.3.21 | extract, 4.4.2, 8.1, 10.1.3, 22.4.12, 22.8.8 |
| surface, 6.3 | 2D, 10.1.1 |
| electrostatics, 6.3.1, 12.7.8 | 3d coordinates to spreadsheet, 10.1.3 |
| elegant sketch, 6.10.4 | icb, 3.6.1.5 |
| element, 10.4.10 | object icb, 4.4.2 |
| eln, 19.7 | sub alignment, 8.3.10 |
| embed browser, 7.11 | icb, 3.6.1.5 |
| powerpoint03, 7.8 | pharmacophore, 10.5.6.4 |
| powerpoint07, 7.9 | faq, 22, 22.2, 22.2.13, 22.4, 22.5, 22.7, 22.10, 22.10.2 |
| powerpoint10, 7.10 | ISISdraw, 22.8.3 |
| activeicm, 7.13 | MolCart, 22.9 |
| script, 7.13 | activeicm, 22.3 |
| browser, 7.7, 7.11 | path, 22.3.3 |
| firefox, 7.7, 7.11 | alignment secondary structure, 22.6.2 |
| internet.explorer, 7.7, 7.11 | apf model, 22.8.12 |
| microsoft, 7.7 | atom charge, 22.4.21 |
| powerpoint, 7.7, 7.8, 7.9, 7.10 | display, 22.2.17 |
| empty hostid, 22.1.18 | autosave, 22.2.33 |
| enamine, 10.5.5 | backbone, 22.2.13 |
| enantiomer, 22.5.21 | background color, 22.2.2 |
| enantiomers, 12.1.1.5 | job, 22.5.19 |
| energy, 5.6.3, 6.8.14, 10.25, 10.25.2, 12.1.12.2, 22.5.1, 22.5.2, 22.9.8 | beep, 22.2.35 |
| circles, 13.1.10 | binding energy, 22.5.2 |
| maps, 12.1.4, 12.1.5 | blend transition, 22.2.31 |
| terms, 9.20.18 | breaks, 22.2.34 |
| ensemble, 12.2.2 | change torsion, 22.4.16 |
| entropy, 10.25.1 | chem table display, 22.8.4 |
| enumerate formal charge states, 10.16 | chemical monitor, 22.8.10 |
| reaction, 21.6.10 | query2, 22.8.1 |
| clipping plane, 22.2.11 | nmr, 22.4.18 |
| closest, 22.4.22 | nvidia error, 22.1.2 |
| color carbon, 22.2.4 | origin, 22.2.10 |
| skin, 22.2.16 | plist, 22.1.9 |
| command line display, 22.2.32 | pmf score, 22.5.6 |
| convert chemical from pdb, 22.4.1 | pockets, 22.2.14 |
| covalent bond, 22.4.2 | preserve coordinates, 22.8.6 |
| delete, 22.4.9 | quad buffer, 22.1.7 |
| descriptors, 22.8.15 | receptor selection, 22.5.14 |
| deselect, 22.2.7 | reload dock, 22.5.4 |
| dihedral, 22.2.18 | remove salt, 22.8.14 |
| dock charge groups, 22.5.22 | select, 22.2.6 |
| probe, 22.5.13 | renumber, 22.4.4 |
| racemic, 22.5.21 | residue number selection, 22.2.36 |
| repeat, 22.5.5 | rmsd, 22.4.7 |
| working directory, 22.5.23 | rmsdtips, 22.4.8 |
| docking, 22.5 | rocking active ppt, 22.3.1 |
| docktime, 22.5.11 | speed, 22.3.2 |
| dollar, 22.10.3 | rotate chemical, 22.8.13 |
| download install, 22.1.1 | scale display, 22.2.38 |
| druglikeness, 22.8.9 | scanScoreExternal, 22.5.17 |
| energy, 22.5.1 | scanScoreExternal2, 22.5.18 |
| error admin, 22.1.10 | score, 22.5.8 |
| extract ligand, 22.8.8 | script, 22.10 |
| flexible dock, 22.5.15 | sequence secondary structure, 22.6.1 |
| ring docking, 22.5.20 | alignments, 22.6 |
| font size, 22.2.1 | smiles, 22.8.11 |
| foreground table, 22.10.4 | solvent accessible surface table, 22.4.19 |
| gl failure, 22.1.11 | ss, 22.4.17 |
| gui, 22.2 | structure, 22.4 |
| guided dock, 22.5.3 | superimpose, 22.4.6 |
| hitlist, 22.5.7 | surface display, 22.2.37 |
| hydrogen bond acceptors, 22.8.17 | thoroughness, 22.5.12 |
| iSee, 22.2.30 | transparent ribbon, 22.2.3 |
| icmPocketFinder, 22.5.10 | truncate mesh, 22.2.15 |
| insert column, 22.8.7 | view stack, 22.9.8 |
| installation, 22.1 | weak hydrogen bonds, 22.4.20 |
| interactions, 22.2.12 | write pdb, 22.4.3 |
| ligandbox, 22.5.9 | faqcontour, 22.2.28 |
| measure distance ring, 22.8.16 | faqhbondstrength, 22.2.29 |
| merge, 22.4.5 | faqmaps, 22.2.27 |
| modeling, 22.7 | faqoda, 22.2.26 |
| molcart 64bit, 22.1.3 | faqstereo, 22.1.14 |
| query, 22.9.5 | fasta, 8.1.5 |
| sdf, 22.9.4 | fbdd, 13.2 |
| text search, 22.9.6 | fft, 12.7.1 |
| molecule c, 22.2.5 | protein protein docking, 12.7.1 |
| moledit, 22.8.2 | file, 3.6.1.3 |
| movie planes, 22.2.19 | close, 3.6.1.13 |
| newscript, 22.10.1 | compatible, 3.6.1.10 |
| high quality image, 6.15.1 | refinement, 9.1.3 |
| load, 3.6.1.7 | scene antialias, 3.6.3.10 |
| menu, 3.6.1 | screen, 3.6.3.8 |
| password, 3.6.1.11 | function, 17.1.26, 17.1.32 |
| preferences, 3.6.1.16 | functional.groups, 10.13 |
| quick image, 3.6.1.14 | fuzzy, 12.3 |
| icb, 4.1.10 | gap, 9.3 |
| recent, 3.6.1.17 | general preferences, 4.7.5 |
| bak, 3.6.2.11 | generalselecttools, 4.6.1 |
| filter, 18.2, 22.2.4 | generator, 5.3.3, 10.21 |
| selection, 4.6.8 | getting started, 4 |
| filters, 13.1.5 | giga search, 10.5.5 |
| find chemical, 10.3.32 | enamine, 10.5.5 |
| fingerprint, 11, 11.3, 21.13, 22.8.1, 22.9.5 | glasses, 6.6, 22.1.6, 22.1.14 |
| method, 11.3 | glutamine proline, 9.20.2 |
| fingerprints, 22.8.15 | google, 3.6.1.7 |
| firefox, 22.3 | objects, 6.3.7 |
| fit, 10.3.34, 12.5, 22.5.15 | 3D, 3.7.6, 6.3.7 |
| fitting, 12.5, 17.4.16 | gpcr_model, 21.5.1 |
| flex super, 10.35.3 | graft loop, 9.4 |
| flexibility, 5.6.4, 12.2.3, 21.12 | graphical, 22.2.4 |
| flexible, 10.35, 12.2, 12.2.1, 12.2.2, 21.12.1, 22.5.15 | display, 5.1.3.1, 5.1.3.2, 10.7.2, 10.7.3 |
| docking, 16.13 | tutorial, 21.1 |
| receptor groups, 16.13 | 2D3D labels, 21.1.4 |
| ring sampling level, 12.1.6 | annotation, 21.1.2 |
| flood, 9.20.17 | color representation, 21.1.1 |
| fog, 3.6.3.5, 6, 6.10.1 | labels, 21.1.3 |
| font, 4.7, 4.7.7, 5.2.3.1, 6.8.2, 6.8.3, 8.7.7, 8.7.7.1, 10.3.28, 17.1.40, 17.7.4 | user interface, 22.2 |
| preferences, 4.7.7 | graphics, 4.1 |
| size, 8.7, 22.1.16, 22.2.1 | card, 22.1.2 |
| form view, 17.1.5 | controls, 6 |
| formal, 5.1.3, 22.4.21 | defects, 22.1.12 |
| charge, 6.1.9, 10.15, 10.16 | effects, 6.10 |
| format, 17.1.2, 17.1.40 | panel, 6.2 |
| formula, 10.4.9, 10.11 | preferences, 4.7.3 |
| fragment, 10.3.35, 10.34.1, 13, 13.2, 16.11 | shadow, 3.6.3.13, 6.10.2 |
| linking, 16.11 | green arrows, 8.7.16, 22.6.2 |
| screening, 13.2 | lines, 8.2, 22.6.1 |
| fragments, 10.8 | grid, 10.3.3, 10.35, 21.12.1, 22.8.4 |
| frame, 8.3.3 | grob, 4.7.5, 5.3.4, 5.3.6, 5.3.7, 6.3 |
| free energy, 9.12, 9.13 | group, 10.34.1, 16.6 |
| radical, 10.4.7 | column, 17.1.46 |
| wilson regression analysis, 10.34.2 | groups, 10.8, 10.11, 10.12 |
| freeze column, 17.1.30 | guanidinium, 10.15 |
| row, 17.1.31 | gui, 4.1.1, 4.7.4 |
| frequency, 10.3.35 | menus, 3.6 |
| front, 6.3.10, 6.13.1 | preferences, 4.7.4 |
| full model, 9.1.3 | tabs, 3.7 |
| builder, 9.1.3 | guided docking, 12.1.7, 22.5.3 |
| multiple chain, 9.1.3.1 | h-bond, 5.2.3, 5.2.3.1, 5.2.3.2, 22.2.12 |
| hardware stereo, 3.6.3.7, 22.1 | tree, 10.26.4 |
| hbond, 5.2, 21.3.6, 22.2.29 | excel, 10.3.10 |
| strength, 22.2.29 | extract 3D ph4, 10.5.6.4 |
| header, 4.2.1.6, 17.4.9 | filter, 10.3.12 |
| health, 5.6.3 | find replace, 10.3.13 |
| heatmap, 17.4.7 | mark row, 10.3.14 |
| example, 17.4.7.1 | markush, 21.6.8 |
| helix, 22.2.20 | structure, 21.6.7 |
| help, 2 | merge tables, 10.3.23 |
| videos, 2 | properties, 10.3.19 |
| hetero, 10.3.28 | reactions, 21.6.10 |
| scan, 16.7 | reorder, 10.26.3 |
| hidden block format, 8.7.11 | sdf, 10.3.9 |
| width, 8.7.11 | show hide, 10.3.8 |
| hide, 17.1.39 | sort column, 10.3.5 |
| column, 17.1.28 | standardize, 10.3.18 |
| high, 3.6.1.15 | table hyperlinks, 10.3.15 |
| quality, 3.6.3.11 | print, 10.3.11 |
| highlight new data, 10.3.7.1 | activeicm, 3.3 |
| his, 22.4.15 | create molecular documents, 3.3.3 |
| histidine, 9.20.2, 22.4.15 | slides, 3.3.2 |
| tautomer, 22.4.15 | getting started, 3.3.1 |
| histogram, 13.1.9.2, 13.1.9.3, 17.4, 17.4.1, 17.4.9, 17.4.11, 17.4.13, 17.4.14, 17.4.15, 17.4.16, 17.4.17, 17.4.18, 17.4.20, 17.4.22 | ppt, 3.3.4 |
| bins, 17.4.3 | web, 3.3.5 |
| options, 17.4.2 | chemical clusering, 10.26.1 |
| bin.size, 17.4.2 | icm browser convert display pocket, 3.1.4 |
| bins, 17.4.3 | distances angles, 3.1.9 |
| color, 17.4.2 | get started, 3.1.1 |
| source, 17.4.2 | graphical display, 3.1.2 |
| style, 17.4.2 | effects, 3.1.5 |
| title, 17.4.2 | images, 3.1.7 |
| historeceptomics, 4.2.10 | labels annotation, 3.1.6 |
| hitlist, 12.1.12, 12.1.13, 13.1.8, 13.1.9.1, 13.1.9.3, 13.1.9.7, 22.5.7 | pro crystallographic tools, 3.2.6 |
| cluster apf, 13.1.9.7 | get started, 3.2.1 |
| columns, 12.1.13.1 | graphics, 3.2.2 |
| export, 12.1.14 | plots, 3.2.8 |
| homology, 4.2.1.2, 4.2.5, 9, 9.1, 9.1.1, 9.1.1.1, 9.1.2.1, 9.1.2.2, 9.1.3.1, 9.2, 9.7, 21.5 | sequence analysis, 3.2.7 |
| model, 9.1, 9.1.1.2 | structure analysis, 3.2.3 |
| introduction, 9.1.1 | superimpose, 3.2.5 |
| older versions, 9.1.1.3 | surfaces, 3.2.4 |
| hover, 17.4.26 | selections, 3.1.3 |
| 3D editor, 21.7 | superimpose, 3.1.8 |
| add columns, 10.3.4 | search, 4.2 |
| cluster center, 10.26.2 | use gui, 4.1 |
| color 2D by ph4, 10.5.6.5 | hrydrogen.bond, 22.2.29 |
| copy 2D, 10.3.16 | html, 3.6.1.12, 4.3, 7.6.1, 7.6.7, 22.3 |
| paste, 10.3.6 | html-doc font size, 22.2.1 |
| decompose, 21.6.9 | hybridization, 10.4.3, 10.5.1 |
| duplicate chemicals, 10.3.21 | hydrogen, 5.2.3, 5.2.3.1, 5.2.3.2, 6.1.8, 10.4.3, 10.5.1, 21.3.6, 22.2.12, 22.8.7, 22.8.10 |
| edit table, 10.3.17 | atom display, 16.3.3 |
| acceptors, 22.8.17 | in-a-window, 22.1.7 |
| donor, 10.37.1 | inchi, 10.18.3 |
| label edit, 5.2.3.1 | increment, 17.1.27 |
| move, 5.2.3.2 | id, 17.1.27 |
| bonds, 5.2.4, 12.1.1.7 | index, 22.9.6 |
| bond, 10.4.9, 22.4.20 | models, 15.1.2 |
| hydrogens, 10.3.28 | induced, 22.5.15 |
| remove, 10.3.18 | fit, 12.2, 12.2.1, 12.2.3, 16.13, 21.12, 21.12.1 |
| hyperlink, 7.6.1, 7.6.2, 17.1.40 | insert, 7.6.4 |
| hyrophobic, 10.37.1 | column, 17.1.26 |
| iSee, 3.6.1.5, 3.6.1.12, 4.1.10, 6.15.3, 21.2, 22.2.30, 22.2.31, 22.3.3 | image, 7.6.3, 17.1.34 |
| icb, 4.4.2, 4.5, 22.2.30, 22.3.3 | table, 17.1.34 |
| icm, 22.3.3 | row, 17.1.33 |
| chemist howto chemical search, 3.4.3 | script, 7.6.4 |
| cluster, 3.4.5 | install, 1, 10.10.1, 19.1, 22.1.3, 22.1.4 |
| combi library, 3.4.7 | installation, 22.1 |
| ph4, 3.4.4 | interaction, 5.5.3, 10.6, 22.2.12 |
| plots, 3.4.8 | fingerprint, 13.1.9.8 |
| sketch, 3.4.1 | fingerprints, 13.1.9.8 |
| spreadsheets, 3.4.2 | restraint, 12.1.7 |
| stereoisomers tautomers, 3.4.6 | restraints, 12.1.7 |
| pro 3D ligand editor, 3.5.1 | interactions, 16.3.12, 22.5.2 |
| chem3D, 3.5.2 | interactive, 12.1.9, 21.2 |
| chemsuper, 3.5.4 | loaded ligand, 12.1.9.2 |
| energy, 3.5.3 | loop, 9.1.4.2 |
| qsar, 3.5.5 | modeling, 9.1.4 |
| tutorials, 3.5 | table ligand, 12.1.9.1 |
| tutorials, 3.4 | modeling, 9.1.4 |
| hanging, 22.1.13 | interface prediction, 21.10 |
| object, 5.1, 21.3.2 | internal hydrogen bonds, 12.1.1.7 |
| script, 17.1.40 | internet explorer, 22.3 |
| icm-crash, 22.1.13 | interrupt, 6.10.7.3 |
| icmFastAlignment, 8.4 | animation, 6.10.7.3 |
| icmPocketFinder, 5.6.6, 22.2.14, 22.5.10 | introduction, 1 |
| icmdb, 19 | invert selection, 17.1.23 |
| icmjs, 7.16 | invisible residue label, 22.1.12 |
| icmpocketfinder, 21.3.7 | iqr, 17.4.23 |
| id, 17.1.27 | isee, 7.6.5 |
| identity, 4.2.1.2 | isis, 10.4.18 |
| image, 4.1.14, 4.7, 4.7.5, 6.15.3, 7.6.3, 10.2, 10.2.6, 17.4.21, 22.1.20 | isostere, 13.4 |
| advanced, 6.15.3 | isotope, 10.4.3, 10.5.1 |
| distortion, 22.1.20 | iupac, 10.2.7, 10.3.20 |
| preferences, 4.7.6 | javascript, 7.16 |
| problem, 22.1.20 | job, 22.5.19 |
| multiple, 3.6.1.7 | join, 10.30 |
| quality, 3.6.3.11 | jpg, 6.15 |
| quick, 3.6.1.14, 6.15.2 | means, 17.7.1 |
| images, 6.15 | kcc, 15.3.1, 15.5 |
| impose, 12.2.2 | keep carboxyls neutral, 12.1.6 |
| improve model, 11.1.3 | kernel regression, 15.3.1 |
| keyboard mouse, 6.11 | considerations, 12.1.1.2 |
| keystokes in chem-edit, 10.4.10 | editor, 16, 16.10, 16.10.1, 16.16, 16.17 |
| kmz, 3.7.6, 6.3.7 | bioisostere, 16.8 |
| knime, 20 | covalent docking, 16.16 |
| label, 4.7.7, 17.7.4, 22.2.17 | mrc, 16.15 |
| atoms, 6.8.2 | preferences, 3.6.2.18 |
| color, 6.8.7 | energetics, 10.25 |
| move, 6.8.4 | conformational entropy, 10.25.1 |
| residues, 6.8.3 | strain, 10.25.2 |
| sites, 6.8.6 | pocket, 5.2.4, 22.4.11 |
| variables, 6.8.5 | surface, 16.3.2 |
| 2D, 3.7.3 | receptor contacts, 16.3.12 |
| 3D, 3.7.3, 6.8.1 | display, 5.2 |
| atom, 6.8.1 | interaction, 10.6 |
| atoms, 6.8.2 | strain, 16.3.10 |
| color, 6.8.7 | surface, 5.2.2 |
| custom, 6.8.8 | tether, 16.12 |
| delete, 6.8.1, 6.8.9 | ligand-based, 13, 13.3 |
| distance, 6.8.10 | convert, 9.20.1 |
| drag, 3.6.3.16 | editor, 16, 16.1 |
| move, 3.6.3.16, 6.8.4 | binding.re-dock ligand, 16.9 |
| residue, 6.8.1 | display, 16.3 |
| residues, 6.8.3 | edit, 16.5 |
| site, 6.8.1 | energy, 16.3 |
| sites, 6.8.6 | hydrogen.bond, 16.3 |
| variable, 6.8.1 | pocket, 16.3 |
| variables, 6.8.5, 22.2.18 | preferences, 16.2 |
| labeling, 6.8.1 | restraint, 16.12 |
| labels, 6.8, 10.3.28 | surface, 16.3 |
| distances, 6.8.10 | tether, 16.12 |
| tab, 3.7.3 | optimization, 21.11.3 |
| landscape, 4.7.6 | pocket, 4.1.8 |
| large chemical space, 21.6.4 | receptor.contact, 5.5.3 |
| font, 22.1.16 | ligand_pocket_interactions, 5.2.4 |
| size, 22.1.9 | ligedit distance restraint, 16.12.2 |
| sdf, 10.1.2 | tab, 3.7.5 |
| layer, 6.14 | tether, 16.12.1 |
| layers, 6.14 | light, 3.7.2 |
| learn, 10.19, 10.20, 11, 11.1, 17.6, 22.8.12 | tab, 3.7.2 |
| learning, 11 | lighting, 6.3.9.4, 6.5 |
| theory, 11.5 | likeness, 10.11, 22.8.9 |
| least.squares, 17.4.16 | line, 4.7.5, 17.7.4, 22.2.12 |
| library, 10.33.4 | lineWidth, 4.7.3 |
| reaction, 21.6.10 | link, 8.3.9 |
| license, 22.1.4 | structure to alignment, 21.4 |
| ligand, 5.2.2, 10.6, 10.25, 10.25.1, 10.25.2, 12.1.1, 12.2, 12.7.6, 12.7.7, 16.3.12, 16.3.13, 16.5.8, 16.10, 16.11, 22.4.5, 22.4.11, 22.5.2, 22.5.9, 22.8.8 | linker, 12.8 |
| based screen, 10.37.3, 13.3 | links, 4.6.20 |
| best replace, 16.6 | linux, 10.10.1 |
| binding, 9.15 | lipinski rule, 10.32 |
| code, 4.2.1.3, 4.2.7 | list, 4.6.18 |
| load, 3.6.1.3, 3.6.1.17, 5.3.4, 5.3.6, 5.3.7, 8.1 | molt, 18.1 |
| example alignment, 8.3.14 | receptor maps, 12.1.5 |
| nmr model, 4.2.1.4 | selection, 4.6 |
| protein structure, 5.1.1 | bond, 22.4.2 |
| sequence, 8.1 | disulfide, 9.9, 22.4.17 |
| extract pdb, 8.1.3 | molecule, 3.6.1.1 |
| from file, 8.1.4 | object, 3.6.1.1 |
| paste, 8.1.2 | making molecular slides, 7.1 |
| swissprot, 8.1.1 | html, 7.6 |
| libraries, 9.20.6 | manual change torsion, 16.5.4 |
| local, 22.2.24, 22.2.25 | map, 4.7.7, 5.3.4, 5.3.6, 5.3.7 |
| databases, 18 | cel, 5.3.5 |
| database.browse, 18.2 | maps, 12.1.4, 12.1.5, 12.7.8, 21.12.1, 22.2.27, 22.2.28, 22.5.9 |
| edit, 18.3 | mark, 17.1.45 |
| query, 18.4 | row, 17.1.45 |
| row, 18.3 | color, 17.4.14 |
| localpdb, 22.2.24 | shape, 17.4.13 |
| localseq, 22.2.25 | size, 17.4.13 |
| lock, 6.3.10, 6.13.1, 10.3.31 | markush, 10.26.7, 10.33.1, 10.33.3, 10.34.1, 21.11.3 |
| log, 17.4.6, 17.4.11 | docking, 21.11.3 |
| logD, 10.11.6 | library, 21.6.8 |
| logP, 10.4.9, 10.11 | mass, 22.4.22 |
| logS, 10.4.9, 10.11 | matched pair, 10.34.6, 21.6.11 |
| logarithmic, 17.4.11 | analysis, 10.34.6 |
| logout, 3.6.1.19 | materials, 3.7.6 |
| loop, 9.2, 9.4, 22.2.20 | max, 17.7.1 |
| analysis, 9.6 | maxColorPotential, 4.7.10 |
| design, 9.3 | maximum common substructure, 10.26.6, 10.28, 10.28.1 |
| find pdb segments, 9.6 | dendrogram, 10.28.1 |
| model, 9.2, 9.3, 21.5.2 | mcs, 10.26.6, 10.28.1 |
| tutorial, 21.5.2 | rgroup decomposition, 10.26.7 |
| modeling, 9.1.4.2, 9.5, 9.6, 9.20.10 | mean, 17.4.6, 17.4.23, 22.4.7 |
| preferred residues, 9.5 | measure distance, 22.8.16 |
| model, 9.20.9 | to ring, 22.8.16 |
| sample, 9.20.9 | median, 17.4.6, 17.4.23 |
| energy water, 9.20.17 | memory, 10.1.2 |
| mac, 10.10.1, 22.1.9, 22.1.16 | menu, 7.6.5 |
| font, 22.1.16 | chemistry, 3.6.14 |
| size, 22.1.16 | docking, 3.6.15 |
| machine learning, 21.13 | homology, 3.6.13 |
| macrocycles, 9.19 | molmechanics, 3.6.16 |
| macros, 7.14 | tools chemical search, 3.6.11 |
| macroshape, 3.6.3.22, 6.3, 6.3.6 | molecular editor, 3.6.12 |
| make, 6.10.7.1, 17.1.1 | windows, 3.6.17 |
| alignment, 8.6.1 | merge, 10.30, 22.4.5 |
| animation, 6.10.7.1 | two sets, 10.30 |
| apf docking sar model, 15.6 | mesh, 5.2.1, 5.2.2, 5.3.4, 5.3.6, 5.3.7, 6.3, 6.3.9.1, 6.3.9.2, 6.3.9.4, 6.3.10, 6.3.11, 6.3.12, 6.13.1 |
| complex, 13.1.9.6, 16.20 | clip, 6.3.10 |
| flat, 22.8.13 | color lighting, 6.3.9.4 |
| molecular document, 7.6 | options, 6.3.9 |
| save, 6.3.11 | graphics, 6 |
| options, 6.3.9 | matched pairs, 21.6.11 |
| meshes, 6.3.2, 6.10.5 | mechanics, 9.20 |
| surfaces grobs, 6.3 | convert, 9.20.1 |
| tab, 3.7.6 | design loop, 9.20.10 |
| metabolic oxidation, 15.7 | edit structure, 9.20.5 |
| min, 17.7.1 | gamess, 9.20.16 |
| minimization, 9.17 | generate normal mode stack, 9.20.14 |
| cartesian, 9.20.8 | his asn, 9.20.2 |
| global, 9.20.8 | ic table, 9.20.13 |
| local, 9.20.8 | impose conformation, 9.20.4 |
| minimum specifications, 1 | minimize, 9.20.8 |
| mmff, 9.20.6, 10.4.16, 22.2.17, 22.8.5 | mmff, 9.20.6 |
| type, 6.8.2 | regularization, 9.20.3 |
| mmp, 21.6.11 | sample loop, 9.20.9 |
| mnSolutions, 4.7.10 | peptide, 9.20.12 |
| model, 9, 9.1, 9.1.1, 9.1.1.1, 9.1.2, 9.1.2.1, 9.1.2.2, 9.1.3.1, 9.2, 9.7, 9.17, 21.5 | protein, 9.20.11 |
| domain interaction, 9.17 | terms, 9.20.18 |
| start, 9.1.1.2 | view stack, 9.20.15 |
| weight, 11.1.2 | modeling, 9 |
| modelers view, 9.1.4.1 | table, 10.18.2 |
| view, 9.1.4.1 | weight, 10.4.9 |
| modeling, 9.20.3 | molecule, 22.2.8, 22.8.3 |
| options, 9.1.1.1 | editor, 10.4 |
| modeller view, 9.1.4 | moledit, 10.4.8 |
| modification history, 16.5.6 | molmechanics, 22.9.8 |
| modify, 9.11 | minimize, 9.20.8 |
| amino acid, 9.11 | mmff, 9.20.6 |
| group, 9.10 | molscreen, 13, 15 |
| mol, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6, 10.4.13, 21.11.2 | custom model panel, 15.4 |
| mol2, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6 | load models, 15.1.1 |
| molcart, 10.10, 10.10.1, 10.10.2, 10.10.3, 10.10.4, 10.10.5, 18, 19, 22.1.3, 22.8, 22.8.1, 22.9.3, 22.9.4, 22.9.5, 22.9.6 | run, 15.1 |
| add database, 10.10.3 | model type, 15.3 |
| administration, 10.10.5 | results, 15.2 |
| connect, 22.9.2 | molskin, 6.3.2 |
| download dbs, 22.9.3 | molsynth, 10.11.5 |
| hostid, 22.9.1 | molt, 18, 18.4 |
| installation, 10.10.1 | monitor, 22.8.10 |
| license, 22.1.4 | monochrome, 10.3.28 |
| search, 10.10.4 | montecarlo, 22.9.7 |
| start, 10.10.2 | mouse, 4.1.3, 6.11, 6.12 |
| connect, 22.9.2 | mov, 6.16, 6.16.2 |
| hostid, 22.9.1 | move, 3.6.3.19, 4.1.11, 4.1.13, 5.2.3.2, 6.3.9.1, 6.3.9.2, 6.12, 6.12.7, 9.17, 22.4.5 |
| license, 22.9.1 | column, 17.1.28 |
| molclart, 22.1.4 | mesh, 6.3.9.2 |
| molecular, 10.3.30, 10.3.31, 10.3.34, 10.3.35, 10.21, 22.8.7, 22.8.10 | slide, 7.4.2 |
| animations slides, 7 | structure, 6.12 |
| documents, 21.2 | tools, 6 |
| dynamics, 14 | rotate, 6.11 |
| editor, 22.8.2 | slab, 6.11 |
| z-rotation, 6.11 | numbers, 10.3.28 |
| zoom, 6.11 | nvidia, 22.1.2 |
| movie, 6.16.1, 22.2.19, 22.9.7 | obj, 6.7 |
| montecarlo, 22.9.7 | object, 4.1.11, 4.5, 21.3, 22.2.8 |
| making, 6.16, 6.16.2 | objects, 5.1.2 |
| open, 6.16, 6.16.2 | in table, 17.3 |
| mpa, 21.6.11 | in.table, 17.3 |
| mpeg, 6.16, 6.16.1, 6.16.2 | occlusion, 6.3.12, 6.10.5 |
| mpg, 6.16, 6.16.2 | shading, 6.3.12 |
| mpo, 10.32 | effect, 6.10.5 |
| customized, 10.32.1 | occupancy, 6.1.3, 21.3.10 |
| mtl, 6.7 | display, 4.2.1.5 |
| multi apf super, 10.36.3 | oda, 5.6.5, 12.7, 12.7.2, 12.7.3 |
| panel, 6.2 | older version, 3.6.1.10 |
| parameter optimization, 10.32 | omega, 6.8.5, 22.2.18 |
| template, 9.1.4.3 | online databases, 10.5.5 |
| windows, 6.2 | open, 3.6.1.3, 4.4, 17.1.2 |
| multiple, 12.2.2, 21.12.1 | file, 4.4 |
| chain, 9.1.2.2, 9.1.3.1 | password, 4.4.1 |
| position group scan, 16.7 | with password, 3.6.1.4 |
| rec, 12.2.2 | movie, 6.16, 6.16.2 |
| receptor, 4.2.2, 21.12 | password, 3.6.1.4, 4.4.1 |
| docking, 16.15 | optimal, 5.6.5, 12.7, 12.7.2, 12.7.3 |
| protein, 22.2.5 | optimize, 9.20.2 |
| mutant, 9.10, 22.4.13, 22.4.14 | oracle, 19 |
| mutate, 9.12, 9.13, 22.4.15 | orange, 4.6.5 |
| residue, 22.4.13 | selection, 4.6.5 |
| N C, 22.4.14 | origin, 6.8.11, 22.2.10 |
| mutation, 9.10, 9.12, 9.13, 9.15, 21.5.3, 21.5.4, 22.4.13, 22.4.14 | orthosteric, 5.6.6 |
| protein binding, 9.12 | other selection, 4.6.19 |
| ligand, 9.15 | outside, 22.5.9 |
| peptide, 9.14 | overlay, 21.3.3, 22.2.5, 22.4.6 |
| stability, 9.13 | pH, 10.17, 12.1.1.3 |
| mysql, 19 | package.activeicm, 7.13 |
| navigate workspace, 4.6.10 | packing, 5.3.1 |
| nearest, 22.4.22 | pages, 19.7 |
| neural network, 12.1.13.1 | pairwise, 10.36.1, 10.36.2 |
| Torsion Profile Neural Network Prediction Engine, 6.12.6.1 | apf score, 10.37 |
| new, 8.1 | parallelization, 13.1.7 |
| icm session, 3.6.1.2 | password, 10.10.5 |
| table, 17.1.1 | paste, 10.4.11, 10.4.18, 17.1.35 |
| table, 17.1.1 | pca, 17.5 |
| nmr, 22.4.18 | pdb, 3.6.1.7, 4.2, 4.2.1.1, 4.2.7, 4.5, 5.1.3, 10.7.1, 21.3, 22.2.24, 22.2.25, 22.4.4 |
| model, 4.2.1.4 | chem gl, 10.7.3 |
| nntorsion, 6.12.6.1 | iw, 10.7.2 |
| nof, 10.11.2 | dormat, 4.5 |
| chemical, 10.11.2 | file, 22.4.3 |
| non-contiguous selection, 4.6.18 | html, 4.2.1.6 |
| normal modes, 9.20.14 | preparation, 21.3.11 |
| number of sp3, 10.11.2 | search, 4.2.1, 4.2.1.2, 4.2.1.3, 21.3.1 |
| recent, 3.6.1.18 | logarithmic, 17.4.12 |
| search, 3.7.4, 4.1.2 | mark, 17.4.13 |
| pdbsearchfield, 3.6.2.13 | mean median iqr, 17.4.23 |
| pdbsearchhomology, 3.6.2.15 | point label, 17.4.19 |
| pdbsearchidentity, 3.6.2.14 | preferences, 4.7.8 |
| pdbsearcsequence, 3.6.2.16 | groups, 17.4.25 |
| peptide, 4.3, 9.14, 9.19, 12.6 | regression, 17.4.16 |
| docking, 12.6 | selection, 17.4.18 |
| modeling, 9.19 | zoom translate, 17.4.17 |
| percentage similarity, 8.7.15, 21.4.4 | axis, 17.4.15 |
| perspective, 3.6.3.9, 6.10.6 | display, 17.4.15 |
| ph4, 10.5.6 | grid, 17.4.15 |
| draw 2d, 10.5.6.1 | inline, 17.4.22 |
| 3d, 10.5.6.2 | logarithmic, 17.4.12 |
| search, 10.5.6.3 | pls, 10.19, 10.20, 11, 17.6, 21.13 |
| pharmacophore, 10.3.35, 10.5.6.5, 21.8.2 | pmf, 22.5.6 |
| 2D, 21.6.6 | png, 3.6.1.14, 6.15, 6.15.2, 7.6.3, 10.2, 10.2.6 |
| 3D, 21.6.5 | pocket, 4.1.8, 5.2, 5.2.1, 5.2.2, 5.6.6, 12.1, 21.3.7, 22.2.14, 22.4.11, 22.5.10 |
| clone, 10.5.6.2 | conservation, 22.4.12 |
| draw2D, 10.5.6.1 | surface, 5.2.1, 13.1.10 |
| draw3D, 10.5.6.2 | peptide, 4.1.8 |
| edit, 10.5.6.1, 10.5.6.2 | properties, 4.1.8 |
| move, 10.5.6.2 | pocketome, 4.2, 4.2.2 |
| new, 10.5.6.2 | pockets, 5.6.6 |
| search, 10.5.6, 10.5.6.3, 21.6.5, 21.6.6 | point label, 17.4.19 |
| phi, 6.8.5, 22.2.18 | portait, 4.7.6 |
| phylogenetic, 8.7.8 | post edit ligand, 16.5.8 |
| phylogeny, 8.7.8 | screen, 13.1.9 |
| pi, 5.2.5 | postscript, 4.7.6 |
| pi, 5.2.5 | potential mean force, 13.1.4 |
| picking, 6 | ppbatch, 12.7.9 |
| picture, 3.6.1.14, 4.1.14, 6.15.2, 7.6.3 | ppepitope, 12.7.7 |
| tips, 4.1.14 | ppmaps, 12.7.8 |
| chart, 17.4.8 | pprefine, 12.7.11 |
| pipi, 5.2.5 | ppresults, 12.7.10 |
| pka, 10.15 | pproc, 12.7.3 |
| planar, 5.5.7, 6.8.5, 22.2.18 | ppsetligand, 12.7.6 |
| angle, 5.5 | ppsetproject, 12.7.4 |
| angle, 6.9.2 | ppsetreceptor, 12.7.5 |
| plane, 6.3.10, 6.13, 6.13.1, 6.14, 22.2.11, 22.2.19, 22.2.21 | ppt, 7.12, 7.14, 22.3.3 |
| faq, 22.2.21 | predict, 8.3.2, 10.19, 10.20, 11, 11.2, 17.6, 22.8.9, 22.8.12 |
| plot, 4.7, 4.7.8, 13.1.9.2, 17.4, 17.4.1, 17.4.4, 17.4.9, 17.4.11, 17.4.13, 17.4.14, 17.4.15, 17.4.16, 17.4.17, 17.4.18, 17.4.20, 17.4.21, 17.4.22, 17.4.23 | disulfide, 9.16 |
| R group sar, 10.34.4 | metabolic oxidation, 15.7 |
| axis, 17.4.11 | predicting bioassays, 11.2 |
| color, 17.4.14 | compound properties, 11.2 |
| columns, 17.4.6 | prediction binding, 9.12 |
| function, 3.6.9, 3.6.9.1 | preferences, 4.7, 13.1.5, 22.2.24, 22.2.25 |
| grid, 17.4.15 | preferred residues, 9.5 |
| header, 17.4.9 | presentation, 7.6.5, 7.7, 7.12 |
| inline, 17.4.22 | presentations, 7 |
| press-and-hold to rotate, 10.4.8 | convert, 21.3.2 |
| pretty view, 16.3.6 | hydrogen bond, 21.3.6 |
| primary aliphatic amines, 10.15 | icmpocketfinder, 21.3.7 |
| principal component analysis, 17.5 | search, 21.3.1 |
| regression, 11 | superimpose, 21.3.3 |
| components, 11.5 | superposition, 5.4 |
| print, 6.7, 17.4.20, 17.7.3 | select, 5.4.1 |
| alignment, 8.7.4 | sites by apf, 5.4.6 |
| plot, 17.4.20 | superimpose 3D, 5.4.3 |
| alignment, 8.7.4 | grid, 5.4.5 |
| printer.resolution, 4.7.6 | multiple proteins, 5.4.4 |
| pro-drug, 10.24 | protein-protein, 5.6.5, 12.7, 12.7.1, 12.7.2, 12.7.3, 12.7.4, 12.7.5, 12.7.6, 12.7.8, 12.7.9, 12.7.10, 21.10 |
| probe, 12.1.4, 22.5.13 | docking refinement, 12.7.11 |
| problem, 22.1.14 | protein-proteindocking, 12.7.7 |
| with selection, 22.1.12 | convert, 9.20.1 |
| prodrug, 10.24 | protonated, 22.4.15 |
| profile, 4.2.10, 8.3.8 | protonation, 10.17, 12.1.1.6 |
| project, 3.6.1.5, 12.7.4, 19.6, 21.6.4.6 | state, 12.1.1.6 |
| close, 3.6.1.13 | protonation_ph, 10.17 |
| rename, 3.6.1.9 | protonation_ph_charge, 10.17.2 |
| properties, 6.8.2, 10.11, 10.11.1, 22.8.7 | protonation_ph_concentration, 10.17.1 |
| property, 10.4.9, 22.8.7, 22.8.8, 22.8.9, 22.8.10 | protprot, 12.7 |
| expression, 13.1.9.6 | proximity, 6.3.3, 6.3.4 |
| monitor, 10.4.9 | psa, 10.4.9 |
| protac, 12.8 | psi, 6.8.5, 22.2.18 |
| protect, 7.6.8 | pubchem, 10.1 |
| protein, 5.4.6, 8, 9.14, 22.4.5 | publication quality images, 6.3.2 |
| chain, 9.3 | pubmed, 4.2.1.7 |
| health, 5.6.3 | purple box, 3.6.3.23, 12.1.4, 16.9.1 |
| model, 9.18 | qs hydrogen bond, 5.2.3 |
| protein docking, 21.10 | pdb chem gl, 5.1.3.2 |
| tutorial, 21.10 | iw, 5.1.3.1 |
| sculpting, 9.17 | qsar, 10.19, 10.20, 11.1, 21.13 |
| sequence, 10.4.17 | learn predict, 10.19 |
| structure, 5 | predict, 10.20 |
| analysis, 5.5 | quad buffer stereo, 22.1 |
| closed cavities, 5.5.4 | buffer, 22.1.7 |
| contact areas, 5.5.3 | quality, 3.6.1.15, 4.7.5 |
| distance, 5.5.6 | query, 9.1.2, 19, 19.3, 22.8.1, 22.9.5, 22.9.6 |
| find related chains, 5.5.1 | molt, 18.4 |
| finding dihedral angle, 5.5.8 | processing, 10.5.3 |
| planar angle, 5.5.7 | setup, 10.5.1 |
| rama export, 5.5.10 | quick, 4.1.14 |
| ramachandran plot, 5.5.9 | image, 6.15.2 |
| rmsd, 5.5.2 | model multiple chain, 9.1.2.2 |
| surface area, 5.5.5 | single chain, 9.1.2.1 |
| similarity, 5.7 | start move structure, 4.1.3 |
| tutorials, 21.3 | read pdb, 4.1.2 |
| analysis, 21.3.4 | representation, 4.1.6 |
| contact area, 21.3.5 | selection, 4.1.5 |
| what is selected, 4.6.4 | regul, 9.7 |
| display.distance, 6.9.1 | regularization, 9.7, 9.20.3 |
| start color, 4.1.7 | relationship, 11, 17.6 |
| quit, 3.6.1.19 | covalent geometry, 12.1.6 |
| group, 10.26.7, 10.33.4 | relaxed ligand, 16.3.9 |
| table, 10.33.2 | reload, 12.1.16, 22.5.4 |
| groups, 10.33.2 | dock results, 12.1.16 |
| r-group, 10.26.7, 10.33.2 | remove, 22.2.6, 22.2.7, 22.2.10 |
| decomposition, 10.26.7 | salt, 22.8.14 |
| enumeration, 10.26.7 | explixit.hydrogens, 10.12 |
| r-groups, 17.4.25 | salt, 10.12 |
| racemic, 10.3.28, 10.18.5, 22.5.21 | rename, 17.1.25 |
| radar, 17.4.6 | column, 17.1.25 |
| rainbow, 4.7.5, 6.8.15, 10.3.35, 22.2.38 | project, 3.6.1.9 |
| ramachandran plot, 5.5, 5.5.10 | renumber, 22.4.4 |
| random forest, 11, 21.13 | reorder column, 17.1.29 |
| range, 6.10.7.2 | replace chemical, 10.3.32 |
| rapid isostere replacement, 13.4 | replacement, 16.6 |
| ratio.selection, 4.7.5 | group, 16.8 |
| dock ligand, 16.9 | report, 19.3 |
| reactions, 10.8, 10.33.5 | representation, 3.6.3.19 |
| reactive cysteine, 5.6.2 | residue, 4.7.7, 22.2.8, 22.4.15, 22.4.22 |
| reactivity, 10.11.3 | alternative orientation, 21.3.11 |
| read, 3.6.1.3, 3.6.1.17, 4.4, 8.1, 10.3.1 | content, 8.3.1 |
| chemical, 10.1 | number selection, 22.2.36 |
| spreadsheet, 10.3.1 | range, 4.6.18 |
| table, 17.1.2 | content, 3.6.4, 8.3, 8.3.1 |
| pdb, 4.1.2 | mutate, 22.4.13, 22.4.14 |
| table, 17 | residues, 5.2.1, 5.2.2, 22.2.14 |
| reagent, 10.33.5 | resize, 6.3.9.1, 6.15.3 |
| rear, 6.3.10, 6.13.1 | mesh, 6.3.9.1 |
| recent files, 3.6.1.17 | resolution, 4.2.1.3 |
| pdb codes, 3.6.1.18 | restore, 3.6.2.11, 6.3.10, 6.13.1 |
| receptor, 5.2.1, 5.2.2, 10.6, 12.1.1, 12.2.2, 12.7.5, 12.7.7, 16.3.12, 21.12.1, 22.5.2, 22.5.14, 22.5.15 | default, 22.1.9 |
| considerations, 12.1.1.1 | recent backup, 3.6.2.11 |
| flexibility, 16.15 | restrained docking, 12.1.7 |
| pocket, 16.3.1 | restraint, 16.12.1, 16.12.2 |
| surface, 16.3.1, 16.3.2 | results, 12.7.10 |
| flexibility, 21.12.2 | stack, 12.1.12.2 |
| recover, 3.6.2.11 | retrieve columns, 22.5.24 |
| cylinders, 8.7.16, 22.6.2 | from original database, 22.5.24 |
| lines, 8.2, 22.6.1 | review and adjust binding site, 12.1.4 |
| redo, 3.6.2.10, 10.4.11, 16.5.5 | rgroup, 10.33.4 |
| refine, 9.7, 9.8 | ribbon, 3.7.1, 4.7.9, 6.1.3, 22.2.23, 22.2.34 |
| loops, 9.1.3 | as a mesh object, 22.2.3 |
| side chain, 9.8 | faq, 22.2.23 |
| sidechains, 9.1.3 | preferences, 4.7.9 |
| refinement, 12.2.4 | style, 4.7.9 |
| region, 12.7.7 | breaks, 6.1.3 |
| regression, 10.34.2, 11.1, 11.5, 17.4.16, 21.13 | cylinders, 6.1.3 |
| worm, 6.1.3 | SMILES, 10.4.15 |
| ribbonColorStyle, 4.7.9 | alignment, 8.7.3 |
| ride, 13.4 | PDB, 4.5 |
| gpu benchmark, 13.4.1.2 | pdb, 4.5 |
| server setup, 13.4.1.1 | chemical mol, 10.4.13 |
| setup, 13.4.1 | spreadsheet workspace, 10.2.1 |
| right, 4.1.12 | to chemical spreadsheet, 10.4.14 |
| click, 4.1.12 | docked ligand, 16.18 |
| rigid, 10.35 | file, 4.5 |
| super, 10.35.2 | hits, 16.5.7 |
| table, 10.35.1 | image plot, 17.4.21 |
| ring, 5.2.5, 10.4.3, 10.4.6, 10.5.1 | ligand receptor complex, 16.18 |
| stacking, 5.2.5 | object, 4.1.9 |
| rings, 10.3.28, 10.21, 10.35 | pdb, 4.5 |
| rmsd, 5.5, 5.5.2, 22.4.7, 22.4.8 | project icb, 4.1.10 |
| rock, 3.6.3.15, 6.10.7, 6.10.7.1, 7 | sequence, 8.1.5 |
| speed, 6.10.7.2 | slide, 7.4 |
| root, 22.4.7 | smiles string, 10.4.15 |
| mean square deviation, 5.5.2 | table, 17.1.21 |
| rotate, 3.6.3.15, 4.1.3, 6, 6.10.7, 6.10.7.1, 6.12, 6.12.1, 6.12.2, 7, 10.3.34, 22.8.13 | spreadsheet, 16.5.7 |
| chemical, 10.3.34 | tree, 17.7.3 |
| when pasting, 10.4.8 | sdf, 10.4.14 |
| easy, 3.6.3.12 | image, 3.6.1.15, 4.1.14 |
| speed, 6.10.7.2 | object, 4.1.9 |
| rotating fragment in editor, 10.4.8 | password, 3.6.1.11 |
| rotation, 6.12.1 | picture, 3.6.1.15 |
| rough surface, 22.2.37 | project, 3.6.1.8, 3.6.1.9, 3.6.1.10, 4.1.10 |
| row, 17, 17.1.22, 17.1.35, 17.1.45 | table.view, 17.1.8 |
| flag, 17.1.13 | saving, 3.6.1.8 |
| height, 17.1.7, 22.2.39 | project, 3.6.1.8 |
| mark, 17.1.13 | scaffold, 10.14 |
| hide, 10.3.8 | hopping, 16.8 |
| show, 10.3.8 | scale, 4.7.5, 22.2.38 |
| ruler, 6.8.15 | scan, 9.20.7, 12.1.12.1 |
| molscreen, 15.1.3 | hits, 12.1.12.1 |
| rundock, 22.5.16 | group, 16.7 |
| rxn, 10.4.13 | scarab, 19 |
| safari, 22.3 | add user, 19.5 |
| sali, 10.34.5 | browse export data, 19.4 |
| bridge, 21.3.6 | installation, 19.1 |
| salts, 10.3.18 | new project, 19.6 |
| sample, 9.18, 10.35 | pages, 19.7 |
| double bond cis trans, 12.1.6 | query, 19.3 |
| peptide, 9.19, 9.20.12 | upload data, 19.2 |
| protein, 9.18, 9.20.11 | scare, 12.2.4 |
| racemic centers, 12.1.6 | scatter, 13.1.9.2 |
| sar, 10.26.7, 10.34, 17.4.25 | scatterplot, 13.1.9.4 |
| analysis, 10.34 | score, 12.1.13.1, 13.1.8, 16.4, 21.8.3, 21.8.5, 22.5.7, 22.5.8, 22.5.18 |
| table, 10.34.3 | threshold, 13.1.4 |
| save, 4.5, 6.3.11, 6.10.7.4, 8.1.5, 10.2.3, 17.4.21, 17.7.3, 22.2.33 | screen, 10.37, 21.8.4, 21.9, 21.11.1 |
| screenshot, 6.16, 6.16.2 | all, 3.6.2.3 |
| movie, 6.16.2 | alter, 4.6.7 |
| script, 4.3, 7.6.4, 7.6.5, 22.4.19, 22.10, 22.10.1, 22.10.2, 22.10.3 | atom, 3.6.2.5 |
| sculpting, 9.17 | basic, 4.6.2 |
| sdf, 10.2, 10.2.2, 10.2.4, 10.2.5, 10.2.6, 10.3.35, 10.10, 10.10.3, 10.18.1, 16.10, 18.1, 19.2, 21.11.2, 22.9.3, 22.9.4 | change, 4.6.7 |
| search, 5.7, 10.10, 10.10.4, 18.2, 19.3, 22.9.6 | clear, 3.6.2.7 |
| chembl, 4.2.3 | column, 17.1.23 |
| drugbank, 4.2.8 | filter, 3.6.2.5, 4.6.8 |
| filter, 10.5.2 | graphical, 4.6.16 |
| in workspace, 3.6.2.4 | invert, 3.6.2.6, 17.1.23 |
| pdb, 4.2.1 | level, 3.6.3.3 |
| chemical, 4.2.1 | mode, 3.6.3.4 |
| ligand code, 4.2.7 | near atoms, 3.6.2.8 |
| pocketome, 4.2.2 | neighbors, 3.6.2.5, 3.6.2.8, 4.6.15, 4.6.17 |
| pubchem, 4.2.9 | object, 4.6.11 |
| surechembl, 4.2.4 | other, 4.6.19 |
| tab field, 4.2.1.3 | properties, 3.6.2.5 |
| pdb chemical, 4.2.1.1 | range, 17.1.23 |
| sequence, 4.2.1.2 | residue, 3.6.2.5 |
| tautomer, 10.5.3 | row, 17.1.23 |
| uniprot, 4.2.6 | sphere, 4.6.15 |
| in.workspace, 3.6.2.4 | spherical, 3.6.2.8 |
| secondary aliphatic amines, 10.15 | superposition, 5.4.1 |
| structure, 5.6.1, 22.2.20 | table, 4.6.19, 17.1.23 |
| structure, 3.6.4, 6.1.3, 8.3, 8.3.2 | elements, 17.1.23 |
| select, 4.6.12, 4.6.13, 17, 17.1.45, 22.4.22 | tools, 4.6.1, 4.6.2, 4.6.7, 4.6.8 |
| a tree branch, 17.7.2 | whole, 4.6.11 |
| all, 4.6.14 | workspace, 4.6.9, 4.6.17 |
| amino acid, 4.6.13 | selectioninvert, 3.6.2.6 |
| duplicates, 10.31 | selections, 4.6 |
| molecule, 4.6.12 | links, 8.3.9 |
| neighbors, 4.6.15 | selectneighbors workspace, 4.6.17 |
| graphic, 4.6.16 | organized network, 10.28 |
| object, 4.6.11 | sequence, 3.6.4, 4.2, 4.2.1.2, 4.2.5, 4.2.6, 4.3, 8, 8.1, 8.1.5, 8.2, 8.3, 8.3.7, 8.6.1, 8.6.5, 9.1.2, 10.4.17, 21.3, 21.4, 21.4.4, 22.4.12, 22.6, 22.6.1 |
| residue, 4.6.13, 4.6.18 | analysis, 8.3 |
| by number, 4.6.18 | editor, 8.5 |
| number, 4.6.18 | identity, 8.7.15 |
| tree, 17.7.2 | pattern, 4.2.1.2 |
| atom, 4.1.5, 4.6.3 | reordering, 8.7.8 |
| graphical, 4.1.5, 4.6.3 | secondary structure, 8.2, 22.6.1 |
| object, 4.1.5, 4.6.3 | similarity, 8.7.15 |
| purple.box, 3.6.3.23 | sites, 8.5 |
| residue, 4.1.5, 4.6.3 | structure, 8.3.6 |
| workspace, 4.1.5, 4.6.3 | type, 8.3.4 |
| selectall, 3.6.2.3 | DNA, 8.3.4 |
| selecting.neighbors, 4.6.16 | alignment, 8.3.5, 8.6.2, 8.6.6 |
| selection, 4.6.4, 4.6.5, 4.6.21, 6.3.4, 10.4.11, 17.4.18, 17.7.2, 17.7.4, 22.2.4, 22.2.6, 22.2.7, 22.2.8, 22.2.13, 22.2.32, 22.4.9, 22.4.10, 22.4.22, 22.5.14 | amino acid, 8.3.4 |
| clear, 3.6.2.7 | nucleotide, 8.3.4 |
| neighbors, 3.6.2.8 | protein, 8.3.4 |
| alignment, 4.6.19 | search, 8.4 |
| sequences, 8, 22.2.25 | size, 5.2.3.1 |
| unique, 8.3.13 | sketch accents, 6.10.3 |
| extract, 8.3.13 | markush, 10.33.1 |
| unique, 8.3.13 | reaction, 12.4.1 |
| server, 13.1.7.2 | smiles, 10.4.12 |
| error, 22.1.17 | accents, 3.6.3.14, 6.10.3 |
| set, 10.3.31, 22.4.21 | skin, 3.7.1, 6.1.4, 22.2.16 |
| formal charges, 10.15 | slab, 6.3.10, 6.13.1 |
| server, 22.1.17 | slice, 6.13 |
| bond type, 9.20.5 | slide, 6.10.7.4, 7.2, 7.3.1, 7.6.1, 22.2.31 |
| charges, 9.20.6 | effects, 7.5 |
| chirality, 9.20.5 | movie, 6.16.1 |
| disulfide, 9.9, 22.4.17 | file, 7.2 |
| bond, 9.20.5 | navigation, 7.3.2 |
| formal charge, 9.20.5 | show, 7.3 |
| tether, 9.20.5 | blend, 7.5 |
| types, 9.20.6 | edit, 7.4.1 |
| setAPFparams, 22.8.12 | effect, 7.5 |
| setup, 12.7.6 | smooth, 7.5 |
| ligand receptor, 16.1 | transition, 7.5 |
| shade, 8.7.7, 8.7.7.1 | slides, 6.16.1, 7, 7.1, 7.3, 22.2.30 |
| alignment, 21.4.4 | smiles, 10.4.9, 10.11, 10.18, 10.18.3, 10.18.4 |
| shading, 6.3.12 | smooth, 6.3.9.3 |
| shadow, 6.10.2 | surface, 22.2.37 |
| share model, 11.1.4 | solid, 6.3.9.3 |
| sheet, 22.2.20 | solvent.accessible.area, 22.4.19 |
| shell preferences, 4.7.10 | sort hitlist, 13.1.9.1 |
| shift, 6.8.3 | table, 3.6.10.4 |
| shine, 3.7.2, 4.7.5 | sorting, 13.1.9.1 |
| shineStyle, 4.7.3 | compounds, 17.7 |
| show, 7.3.1, 17.1.39 | sp3, 10.11.2 |
| hide column, 17.1.39 | spec, 3.7.2 |
| side, 10.3.29 | specifications, 22.1.5 |
| by side, 10.3.29 | specs, 1 |
| error, 22.1.19 | faq, 22.1.5 |
| stereo, 3.6.3.6 | speed, 6.10.7.2 |
| chain refinement, 16.14 | sphere, 22.4.11 |
| chains, 9.8 | spherical, 22.4.9, 22.4.12 |
| side-by-side, 22.1.19 | split, 10.34.1 |
| side-chain sampling, 12.7.11 | spreadsheet, 10.18.2 |
| side-chains, 12.2.1 | square, 22.4.7 |
| sigmaLevel, 5.3.6, 5.3.7 | stability, 9.13, 21.5.3, 21.5.4 |
| similarity, 10.29 | stack, 9.18, 12.1.12, 12.7.10, 22.9.8 |
| simulation, 14, 22.9.8 | stacking, 5.2.5 |
| length, 22.5.12 | standalone hitlist, 12.1.14 |
| simulations, 22.7 | standard table, 17.1 |
| single, 10.4.10 | standardize, 10.12 |
| chain, 9.1.2.1 | table, 10.12 |
| singlet, 10.4.7 | start, 10.10.2 |
| sites, 5.4.6 | dock, 12.1 |
| static, 22.4.8 | synthetic feasibility, 10.11.5 |
| stereo, 4.7.6, 6.6, 10.3.28, 10.4.2, 22.1, 22.1.6, 22.1.7, 22.1.14 | system preferences, 4.7.11 |
| bond, 10.4.2 | tab, 17.1.2, 17.1.21 |
| hardware, 3.6.3.7 | pdb, 3.7.4 |
| side-by-side, 3.6.3.6 | table, 4.3, 10.1.3, 10.3.24, 10.3.25, 10.3.28, 10.3.30, 10.3.31, 10.3.34, 10.3.35, 10.18.2, 10.21, 10.35.1, 16.10, 17, 17.1.6, 17.1.35, 17.1.40, 17.1.45, 17.4, 17.4.1, 17.4.4, 17.4.9, 17.4.11, 17.4.13, 17.4.14, 17.4.15, 17.4.16, 17.4.17, 17.4.18, 17.4.20, 17.7.1, 22.4.19, 22.8.4, 22.8.5, 22.8.7, 22.8.8 |
| stereohard faq, 22.1.6 | alignment, 17.1.12 |
| stereoisomer, 10.18.5 | clone, 17.1.16 |
| stereoisomers, 10.23 | color, 17.1.10 |
| stick, 4.7.5 | column format, 17.1.40 |
| stl, 6.7 | copy, 17.1.36, 17.1.37 |
| stop, 6.10.7.3 | delete, 17.1.17 |
| store, 3.6.3.19, 6.10.7.4, 22.2.22 | edit, 17.1.24 |
| current view, 3.6.3.19 | filter, 17.1.43 |
| faq, 22.2.22 | find, 17.1.9 |
| strain, 5.6.3, 10.25, 10.25.2, 12.1.1.8, 16.4 | replace, 10.3.32 |
| strip, 22.4.9 | font, 17.1.11 |
| structure, 5.3.3, 11, 17.6, 21.3, 22.4 | size, 22.2.1 |
| analysis, 21.3.4 | grid, 17.1.5 |
| ensemble, 9.20.14 | histogram, 17.4.1 |
| representation, 6.1 | insert, 17.1.26 |
| smiles, 10.18.4 | layout, 17.1.5 |
| structure-based, 13 | learning, 17.6 |
| structures, 10, 10.1 | mark, 17.1.13 |
| style, 4.7.5 | row, 17.1.13 |
| substituent, 10.9.1, 10.9.2, 10.33.2, 16.5.2 | mouse, 17.1.47 |
| substructure, 10.10.4, 10.13, 12.3, 22.8.1, 22.9.5 | navigation, 17.1.4 |
| template, 16.12.3 | new column, 17.1.26 |
| alerts, 10.13 | plot, 17.4 |
| sulfur, 9.9 | print, 17.1.19 |
| superimpose, 3.6.8, 5.4.2, 5.4.6, 21.3.3, 22.2.5, 22.4.6, 22.4.7, 22.4.8 | rename, 17.1.15 |
| 3D, 5.4.3 | rightclick, 17.1.14 |
| Calpha, 5.4.3 | row height, 22.2.39 |
| arrange.grid, 5.4.5 | save, 17.1.3 |
| backbone, 5.4.3 | selection, 17.1.3 |
| flexible, 10.35.3 | search, 17.1.9 |
| heavy atoms, 5.4.3 | select, 17.1.23 |
| multiple, 5.4.4 | setup, 17.1.18 |
| rigid, 10.35.1, 10.35.2 | sort, 17.1.42 |
| substructure, 10.35.1, 10.35.2, 10.35.3 | split fragments, 10.3.33 |
| superposition, 10.35, 10.36.1, 10.36.2, 21.3.3, 21.8.1 | view, 17.1.5 |
| surface, 3.7.1, 4.7.5, 5.2.1, 5.2.2, 6.1.6, 6.3, 6.3.3, 6.3.4, 22.2.16, 22.2.37, 22.4.19 | save, 17.1.8 |
| area, 5.5 | zoom translate, 10.3.30 |
| area, 5.5.5 | action, 17.1.47 |
| surfaces, 5.2, 6.3.1, 6.3.2, 6.10.5 | alignment, 17.1.12 |
| surrounding, 22.4.11 | append, 17.1.43 |
| swissprot, 8.1, 8.5 | clone, 17.1.16 |
| sxstrace, 22.1.19 | color, 17.1.10 |
| symmetric oligomer, 9.1.3 | column, 10.3.4, 17.1.26, 17.1.32, 17.1.39 |
| symmetry, 5.3.1, 5.3.3, 21.3.8, 21.3.9 | columns, 10.3.8 |
| synthesize, 10.11.5 | compare, 10.3.22 |
| cursor, 17.1.47 | templates, 10.4.6 |
| delete, 17.1.14, 17.1.17 | terminal, 10.3.28 |
| display, 22.10.4 | font size, 22.2.1 |
| double.click, 17.1.47 | tether, 12.1.7, 16.12.1, 16.12.2 |
| edit, 10.3.17 | text, 4.7.7, 7.6, 7.6.1, 7.6.7, 10.3.28, 10.10.4, 17.4.24, 22.9.6 |
| excel, 10.3.10, 17.1.20 | search, 10.5.4 |
| filter, 10.3.12, 17.1.43 | texture, 3.7.6 |
| find-replace, 10.3.13 | thoroughness, 10.21, 10.35, 22.5.12 |
| to screen, 17.1.4 | three, 10.3.24, 22.8.6 |
| font, 17.1.11 | threshold, 4.7.5 |
| foreground, 22.10.4 | tier, 4.1.13 |
| grid lines, 17.1.4 | time, 22.5.11 |
| hide, 17.1.39 | machine, 22.1.15 |
| hyperlink, 10.3.15 | tissue, 4.2.10 |
| insert, 17.1.33 | racemic, 10.18 |
| join, 3.6.10.5 | tools 3D, 3.6.6 |
| label, 10.3.14 | analysis, 3.6.7 |
| landscape, 17.1.18 | append rows, 3.6.10.7 |
| mark, 10.3.14 | extras, 3.6.9 |
| merge, 3.6.10.5, 10.3.23, 10.30 | plot function, 3.6.9.1 |
| mouse, 17.1.47 | superimpose, 3.6.8 |
| name, 17.1.15 | table, 3.6.10 |
| new, 17.1.1 | Learn, 3.6.10.1 |
| options, 17.1.14 | clustering, 3.6.10.3 |
| orientation, 17.1.18 | merge, 3.6.10.5 |
| portrait, 17.1.18 | predict, 3.6.10.2 |
| print, 10.3.11, 17.1.4, 17.1.19 | tooltip, 17.4.26 |
| read, 17.1.2 | balloons, 17.4.26 |
| rename, 17.1.15 | torsion, 6.12.6, 9.20.7, 16.5.4, 22.4.16 |
| right click, 17.1.14 | angles, 6.12, 6.12.6 |
| row, 17.1.33 | scan, 9.20.7 |
| rows, 3.6.10.7 | toxscore, 10.11.3 |
| save, 10.3.9, 17.1.3, 17.1.4, 17.1.21 | trace, 6.1.10 |
| scale, 17.1.18 | transition.blend, 22.2.31 |
| scroll, 17.1.4 | transitions, 7, 22.2.30 |
| sdf, 10.3.9 | translate, 4.1.3, 6, 6.12, 10.3.30 |
| select, 17.1.23 | translation, 6.12.3, 8.3.3, 17.4.17 |
| setup, 17.1.18 | transparent, 6.3.9.3 |
| sort, 3.6.10.4, 10.3.5, 17.1.42 | background, 6.15.3 |
| standard, 17.1 | ribbon, 22.2.3 |
| view, 10.3.29 | surface, 22.2.37 |
| width, 17.1.4 | tree, 8.7.8, 10.26.7, 17.7.2, 17.7.3, 17.7.4 |
| tables, 10.29, 17 | branch swapping, 8.7.8 |
| tag, 4.6.21, 16.5.7, 17.1.46 | distance, 10.26.3 |
| tags, 4.6.21 | edit, 10.26.4 |
| tautomer, 10.22, 22.4.15 | reorder, 10.26.3 |
| tautomers, 10.22 | triplet, 10.4.7 |
| temperature, 5.6.4 | trouble shooting, 22.1.11 |
| template, 9.1.2, 10.4.6, 10.35 | trouble-shooting, 22.1.12 |
| docking, 22.5.3 | truncating a mesh object, 22.2.15 |
| tsv, 17.1.21 | animate view, 3.6.3.15 |
| tut analyze alternative orientations, 21.3.11 | center, 3.6.3.20 |
| occupancy, 21.3.10 | color background, 3.6.3.18 |
| symmetry, 21.3.9 | dock results, 12.1.12 |
| multiple receptor, 21.12.1 | fog, 3.6.3.5 |
| tut3, 21.5 | macroshape, 3.6.3.22 |
| tut3e, 21.3.12 | menu, 3.6.3 |
| tut5a, 21.9.1 | mesh clip, 6.13.1 |
| tut5b, 21.9.2 | perspective, 3.6.3.9 |
| tut5c, 21.11.1 | selection level, 3.6.3.3 |
| tut5e, 21.11.2 | mode, 3.6.3.4 |
| tutorial 2D pharmacophore, 21.6.6 | shadow, 3.6.3.13 |
| 3D pharmacophore, 21.6.5 | sketch accents, 3.6.3.14 |
| chemical clustering, 21.6.3 | slide show, 7.3.1 |
| search, 21.6.2 | tools, 3.6.3 |
| molecular documents, 21.2 | tree, 17.7.4 |
| sequence alignment, 21.4 | undisplay all, 3.6.3.1 |
| link, 21.4.2 | stach, 9.20.15 |
| load sequence, 21.4.1 | virtual, 13.1, 13.1.1, 13.1.2, 21.9, 21.11.1 |
| sequence conservation, 21.4.3 | ligand screening, 15 |
| tutorials, 21 | screen, 13.3, 13.4 |
| two, 10.3.24, 22.8.6 | screening, 13, 13.2 |
| ubuntu, 22.1.18 | examples, 21.11 |
| unclip, 6.3.10, 6.13.1 | virus, 5.3.3 |
| undisplay, 4.1.4, 6.1.7, 22.2.10, 22.2.32 | visualize, 10.28 |
| box shade font, 8.7.7.1 | apf fields, 16.3.11 |
| undisplay-all, 3.6.3.1 | chemical space, 10.28 |
| origin, 6.8.11 | ligand strain, 16.3.10 |
| undo, 3.6.2.9, 4.7, 10.4.11, 16.5.5 | vls, 12.2, 12.2.3, 13, 13.1, 13.1.6, 13.1.7.2, 13.1.9.6, 13.3, 21.11.2, 22.5.7, 22.5.8, 22.5.24 |
| redo, 16.5.5 | analysis, 13.1.9.6 |
| uniprot, 4.2.6, 8.5 | display, 13.1.9.5 |
| unique, 10.3.28, 10.31 | command line, 13.1.7.2 |
| unit, 5.3.3 | getting started, 13.1.2 |
| units, 22.5.1 | histogram, 13.1.9.3 |
| unix, 22.10.2 | scatter plot, 13.1.9.2 |
| unsatisfied hydrogen bonds, 16.3.8 | introduction, 13.1.1 |
| unusual peptide, 4.3 | preferences, 13.1.4 |
| upload, 19.2 | results, 13.1.8 |
| use activeicm, 7.12 | run, 13.1.6 |
| user, 10.10.5, 19.5 | scatterplot, 13.1.9.4 |
| defined groups, 16.5.3 | score, 12.1.1.4 |
| modifiers, 16.5.3 | visualization, 13.1.10 |
| user-defined groups, 10.4.5 | results, 13.1.8 |
| van der waal, 6.8.14 | volume, 10.4.9 |
| variable, 4.7.7, 22.2.8 | water, 9.20.17 |
| verbose, 10.21 | waters, 9.20.17 |
| large sdf files, 10.1.2 | wavefront, 3.7.6, 6.3.11, 6.7 |
| vicinity, 10.21 | weak, 22.4.20 |
| video, 2, 6.16, 6.16.1, 6.16.2 | web, 21.2 |
| view, 3.6.3.19, 7.3.1, 10.3.28, 22.2.22, 22.9.8 | browser, 3.6.1.12 |
| weighted, 17.7.1 | |
| width, 17.1.22 | |
| window, 4.1.13 | |
| windows, 4.1.13.1, 10.10.1 | |
| wire, 3.7.1, 4.7.5, 6.1.1, 22.2.4, 22.2.21 | |
| wireBondSeparation, 4.7.1 | |
| working directory, 22.5.23 | |
| workspace, 4.1.4, 5.1.3.1, 10.7.2 | |
| panel, 4.1.4 | |
| selection, 4.6.9 | |
| navigation, 4.6.10 | |
| write, 4.1.14, 4.5, 17.4.21, 22.9.4, 22.9.7 | |
| alignment, 8.7.3 | |
| excel, 10.2.3 | |
| image, 3.6.1.15, 22.1.20 | |
| images, 6.15 | |
| pdb, 4.5 | |
| image, 3.6.1.15 | |
| object, 4.1.9 | |
| picture, 3.6.1.15 | |
| project, 3.6.1.8, 4.1.10 | |
| table, 17.1.3 | |
| writing a pdb file, 22.4.3 | |
| ray, 3.6.5 | |
| xi, 6.8.5, 22.2.18 | |
| xls, 10.2.3 | |
| xlsx, 10.2.3 | |
| xml, 19.2 | |
| xstick, 6.1.2, 22.2.21 | |
| xyz, 22.2.10 | |
| youtube, 2 | |
| zoom, 4.1.3, 6, 6.12, 6.12.4, 10.3.30, 17.4.17 | |
|