Index

2D to 3D conversion, 81
Vertex, 4
2d, 81.2
abagyan, 1
2dto3d, 81.2
about, 1
     chemicals, 76
abstractsub, 5.3
3d, 81.2
activeicm, 72, 72.1
ADME, 59, 68, 75
     release notes, 72.1
AI, 53.8
     user guide, 121
Abagyan, 2.3.9
activeicmjs, 71
ActiveICM, 138
activeicmjstech, 70
Bristol Myers Squibb, 4
address, 2
DNA, 53
alignments, 50, 53
E3 Ligase, 106
amino acids, 55
Enamine, 53.6, 104
andrew orry, 1
Estrogen Receptor, 81.6
android, 73
Excel, 54
animations, 2.3
Fullerton, 2.3.2
annotation, 74
GINGER, 53.7
apf, 53.2, 72.4, 72.5, 81.4, 81.5, 102, 105
GPU, 53.4.1
apfmodels, 72.4
Giga Screen, 53.6
arman, 1
GigaScreen, 53.6
asia, 2.3.7
Green Chemistry, 81.6
atomic property field, 53.2
GreenChem, 81.6
          fields, 72.3, 72.4, 102
HTML5, 81.8.2
automatic, 2.3
Herg, 59
beehive, 18
IUPAC, 55
bicyclics, 55
Java Script, 81.8.2
bind, 53
MD, 43
bioinformatics, 3
ML, 53.8
blocks, 79.5
Merck, 4
browser, 18, 23, 41
Molecular Editor, 81.8.2
     pro license, 41.1.1
     weight, 55
          platforms, 41.1.2
Molsoft News, 2.2
browser-pro, 41
Monsanto, 4
     pro, 89
Novartis, 4
building, 79.5
PBS for lunix cluster, 53.1.1
burnham, 2.2
PK, 68
cancer, 5.20
PLoS ONE, 138
careers, 5
PROTAC, 106
carriers, 9
REAL, 53.6, 104
case studies, 99
RIDE, 105
cereblon, 106
RIDGE, 53.4.1
charity, 3.2
RNA, 53
chembl, 5.9
RTCNN, 53.6, 53.8
chembl_workshop, 5.9
Scripps, 2.3.9
chemical, 75, 81, 81.7
Structural Genomics Consortium, 2.3.1
     cartridge, 79.2, 81.7
TSRI, 2.3.9
     clustering, 62
UK, 5.8
     collections, 79.3
University of Oxford, 2.3.1
     database, 65
V-Synthes, 53.4
     editor, 55
VHL, 106
     file type, 54
     library, 63
documentary, 5.20
     plots, 67
documents, 2.3
     property, 59
download, 13
          prediction, 59
draw, 75
     search, 57
     compounds, 55
          pharmacophore, 58
drug, 53, 53.2, 81
     spreadsheet, 56, 68
     design, 3, 53.2.1, 80, 101
     substructure, 68
     likeness, 44
     superposition, 77, 102
drugability, 81.8
     table, 68
druglikeness, 81.8
     vendors, 79.3
eBioinformatics, 2.3.10
     clustering, 62
ebio, 2.3.10
     file, 54
edit ligand, 101
     property.monitor, 55
editor, 75
     search, 57
effect of mutation, 48
chemicals, 79.4, 79.5, 79.5.1
electrostatics, 53, 72.2.1
cheminformatics, 3, 68, 80
eln, 72.6
chemistry, 18, 81.2
email, 2
chemistry_tools, 51
embed, 71, 72
children, 3.2
embedppt, 98
chirality, 75
emperor of all maladies, 5.20
chrome, 71
enumeration, 63
cloud, 107
eugene, 1
     computing, 107
european workshop, 5.8
cluster, 75
evaluate, 22
comp, 16
evaluation, 135
competition, 141
     feedback, 118
compound, 81.2, 81.7
eventreg, 5.15
compounds, 79.4, 79.5, 79.5.1
fakesec, 136
consulting, 80
feature comparison, 139
contacts, 2
fingerprint, 72.3.1, 72.5
converter, 81.2
     models, 72.3.1
crystallographic_analysis_tools, 45
firefox, 71, 72, 72.1
csv, 54
first place, 141
customer, 80
flexibility, 100
customers, 4
flexible, 53.2, 53.2.1
d3r, 141
focus, 5.20
d3r_success, 141
free, 23
database, 53.2, 53.2.1, 79.2, 79.3
full, 53
dec08, 143.2
full073004, 2.3.2
decomposition, 63
genesoft, 2.3.4
degradation, 106
getbrowser, 87
demo, 132
giga search, 104, 105
demo1107, 134
gingerdemo, 81.5
design, 53.2
glues, 106
dfaModels, 72.5
gnf, 2.3.8
directions, 2
grants, 2.2
dlid, 44
graphics, 5.21, 5.22, 5.23
dock, 101
     gallery, 5.21
docking, 3, 53, 53.2, 53.2.1, 80, 100, 107, 133, 141
help, 14, 133, 140
hitachipr, 2.3.7
icm_browser_superimpose, 28
homology, 3, 18, 53, 79.1
icm_browser_views, 34
hotels, 5.2.3
icm_docking_comp, 5.6
howto, 133
icm_pro, 53
html, 2.3
icmpocketfinder, 44
hybrid, 72.5
icmugm12, 5.1
hyperlinked text, 2.3
imdp, 2.3
iMolview, 73
     silico, 81.8
icb file, 41
induced fit, 100
          writer, 41
          docking, 100
icm, 6, 18, 23, 53, 53.2.1
install acticm linux, 85
     browser, 23
          mac, 86
          pro tutorials, 122
          win, 84
          screenshots, 30
     browser linux, 21
          tutorials, 121.1
          mac, 20
     chemist, 68
          win, 19
          cluster, 95
installing icm for cluster, 53.1
          pro, 75
interaction diagram, 64
               qsar, 79
internet explorer, 72
               webinar, 5.11.1
ipad, 73, 92
          spreadsheet, 94
iphone, 73
          tutorials, 122.1
isostere, 105
          webinar, 5.11
jan11, 143.1
     cloud, 107
japan, 2.3.7
     command language, 15
job, 5
     objects, 24
     opportunites, 9
     pocket finder, 44
     queues, 53.1.1
     scarab, 72.6
jobs, 9
     user group meeting, 5.1, 5.2
july08, 143.4
icm-browser, 23
knime, 72.7
icm-pro, 18
     nodes, 72.7
icmPocketFinder, 3
la, 5.18
icm_bioinformatics, 50
learn, 75
icm_browser, 23
legal, 11.1, 11.2
icm_browser_alignments, 27
ligand editor, 101
icm_browser_distance, 33
likeness, 81
icm_browser_file, 24
linker, 106
icm_browser_graphics, 35
linux cluster, 53.1
icm_browser_molecular_graphics, 26
location, 2
icm_browser_pro, 41
logP, 75, 81.8.1
icm_browser_pro_alignments, 40
logS, 81.8.1
icm_browser_pro_crystallography, 38
logo, 72.2
icm_browser_pro_mesh, 29
logos, 93
icm_browser_pro_molecular_documents, 41.1
logp, 81.8
icm_browser_pro_movies, 36
logs, 81.8
icm_browser_pro_plots, 32
logsw, 81.8
icm_browser_pro_spreadsheets, 39
london, 5.8
icm_browser_pro_structure_analysis, 37
london_workshop 2015, 5.8
icm_browser_pro_superimpose, 31
loop, 3
icm_browser_search_pdb, 25
main, 122.2
markush, 63, 68
pbs, 5.20, 53.1.1
max, 1
     documentary, 5.20
meet09, 5.2
pc, 2.1
meetmap, 5.2.1
pdb, 24, 74, 81.1
microsoft, 72
pdbv, 81.1
minimize, 101
pharmacophore, 102
missing, 82
     search, 58, 61
model, 79.1
phone, 2
modeling, 3, 53, 80, 106
plexus, 2.3.5
mol, 24, 53.2, 79.3
plexusvaccine, 2.3.5
mol2, 24
plosone, 138
molcart, 18, 79.2, 79.3, 79.4, 79.5, 79.5.1, 81.7
pocket, 3, 53
     compounds, 79.3
pockets, 44
molecular, 2.3, 81.7
polar surface area, 81.8.1
     dynamics, 43
     lam, 1
     viewer, 23
position, 9
molecular_graphics, 52
powerpoint, 72
moledit, 81.8.2
predict, 75
molgnfpressrapril12, 2.3.8
prediction, 79.1, 80, 81.8, 81.8.1
molscreen, 72.3, 72.4, 72.5
presentations, 2.3, 41
molsoft, 1, 5.20, 81.7, 81.8
price, 89
mpex, 2.3.3
privacy policy, 11.2
mpex061803, 2.3.3
pro, 53
mpo, 60
product gallery, 5.23
mprop, 81.8
     galleryold, 12
mpropdesc, 81.8.1
     prices, 89
msearch, 81.7
products, 18
multi parameter optimization, 60
properties, 81.8.1
multiple slides, 41
protac, 106
     views, 41
protein, 23, 53, 74
mutation, 48
     structure, 41
     prediction, 48
protein-protein interactions, 81
mysql, 79.2
protein_protein_docking, 47
neural network, 53.8, 81.3
protein_structure_analysis, 42
     features, 140
protein_structure_prediction, 49
     icm browser, 69
publications, 6, 11
     version, 140
published, 11
news, 2.2
qsar, 72.3.1, 75
newsletter, 143
queuing program, 53.1.1
non-commercial, 89
rapf, 81.4
nonredundant chemical database, 79.3
raush, 1
notebook, 72.6
rebel, 72.2.1
notes, 72.1
receptor, 53, 53.2, 53.2.1, 100
novartis, 2.3.8, 5.20, 107
references, 6
nra, 93
refinement, 3
oct08, 143.3
release, 72.1
oda, 83
results, 11
openMM, 43
rgroup, 63
openings, 9
rigid, 81.4, 81.5
papers, 11
rings, 55
rna, 108
          protein docking, 117
     drug design, 108
          virtual ligand screening, 116
rotation, 2.3
superimpose, 81.4, 81.5
ruben, 1
support, 2, 14
sandiegofire, 3.2
swissprot, 74
     analysis, 61
switch_to_icm, 5.5
scaffold hopping, 102
syrrx, 2.3.6
scarab, 72.6
teaching, 2.2
score, 53.8
technology, 3
scoring, 53.8
templates, 55
screen, 80
terms of use, 11.1
screening, 53.2, 79.4, 79.5.1, 100, 141
test, 96
screenshot gallery, 5.22
testimonials, 97
scripting, 15
testpub, 10
scripting_tutorials, 15
tl, 5.19
scriptreg, 5.12
tortool, 81.3
sdf, 53.2, 54, 79.2, 79.3
tosion, 81.3
search, 75, 81.7, 91
totrov, 1, 102
sequence, 50, 79.1
tox, 75
servers, 81
toxicity, 59
service, 131
training, 3.1, 5.7, 5.11.2, 5.12, 5.15, 5.17
services, 72.3, 80
trainingreg, 5.17
sgc, 2.3.1
transaction void, 90
similarity search, 81.7
transitions, 2.3
simulation, 53
trial, 22, 135
sitemap, 142
     license, 22
sketch.compounds, 55
tsri, 2.3.9
slides, 2.3, 41
tutorials, 120
small.molecule.drug, 55
     feedback, 119
small_molecule_docking, 46
ugm2016, 5.16
smooth view transitions, 41
ugmArchives, 5.13
software development, 3, 80
ultra large libraries, 53.4.1
solubility, 81.8.1
          screening, 53.3
speak09, 5.2.4
unsubscribe, 7
speakermap, 5.2.2
update, 140
stereoisomers tautomers, 78
upgrade, 88
structure, 74, 79.1
     synthes, 53.4
     prediction, 3
vaccine, 2.3.5
structure-based, 3
vendors, 79.5.1
student, 89
version372, 137
subscribe, 8
video activeicm1, 128
substructure, 104
     activeicm2, 129
     search, 81.7
     dock1, 130
success stories, 109
     ligand editor1, 125
          gpcr competition, 110
          editor2, 126
               familyA, 111
          editor3, 127
               familyB, 112
     pdb1, 123
          induced fit, 115
     pdb2, 124
          kinases, 113
view PDB, 81
          nuclear receptor, 114
     protein viewer, 41
virtual, 53.2, 79.5.1, 80
     screening, 3, 53.2.1, 72.3, 81.8, 105, 107
vls, 3, 18, 53.2, 100
     on cluster, 53.1
vsynthes, 53.4
water solubility, 81.8
web demos, 5.11.2
webinar, 5.10, 5.11.2, 5.14
     archives, 5.14
     free chemist training learn cheminformatics, 5.11, 5.11.1
webinar_registration, 5.11.2
webinar_signup, 5.10
whats new, 140
which_product, 17
workshop, 3.1, 5.1, 5.4, 5.7, 5.8, 5.12, 5.15, 5.17
workshops, 2.2
ws0905, 3.1
xpdb, 18, 74
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