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Index

2D to 3D conversion, 79abstractsub, 5.3
2d, 79.2activeicm, 70, 70.1
2dto3d, 79.2     release notes, 70.1
     chemicals, 74     user guide, 119
3d, 79.2activeicmjs, 69
ADME, 57, 66, 73activeicmjstech, 68
Abagyan, 2.3.9address, 2
ActiveICM, 136alignments, 48, 51
Bristol Myers Squibb, 4amino acids, 53
DNA, 51android, 71
E3 Ligase, 104animations, 2.3
Enamine, 51.5, 102annotation, 72
Estrogen Receptor, 79.6apf, 51.2, 70.4, 70.5, 79.4, 79.5, 100, 103
Excel, 52apfmodels, 70.4
Fullerton, 2.3.2asia, 2.3.7
GINGER, 51.6atomic property field, 51.2
GPU, 51.4.1          fields, 70.3, 70.4, 100
Giga Screen, 51.5automatic, 2.3
GigaScreen, 51.5beehive, 17
Green Chemistry, 79.6bicyclics, 53
GreenChem, 79.6bind, 51
HTML5, 79.8.2bioinformatics, 3
Herg, 57blocks, 77.5
IUPAC, 53browser, 17, 22, 40
Java Script, 79.8.2     pro license, 40.1.1
Merck, 4          platforms, 40.1.2
Molecular Editor, 79.8.2browser-pro, 40
     weight, 53     pro, 87
Molsoft News, 2.2building, 77.5
Monsanto, 4burnham, 2.2
Novartis, 4cancer, 5.21
PBS for lunix cluster, 51.1.1careers, 5
PK, 66carriers, 9
PLoS ONE, 136case studies, 97
PROTAC, 104cereblon, 104
REAL, 51.5, 102charity, 3.2
RIDE, 103chembl, 5.10
RIDGE, 51.4.1chembl_workshop, 5.10
RNA, 51chemical, 73, 79, 79.7
RTCNN, 51.5     cartridge, 77.2, 79.7
Scripps, 2.3.9     clustering, 60
Structural Genomics Consortium, 2.3.1     collections, 77.3
TSRI, 2.3.9     database, 63
UK, 5.9     editor, 53
University of Oxford, 2.3.1     file type, 52
V-Synthes, 51.4     functions, 64
VHL, 104     library, 61
Vertex, 4     plots, 65
abagyan, 1     property, 57
about, 1          prediction, 57

          pharmacophore, 56drug, 51, 51.2, 79
     spreadsheet, 54, 66     design, 3, 51.2.1, 78, 99
     substructure, 66     likeness, 42
     superposition, 75, 100drugability, 79.8
     table, 66druglikeness, 79.8
     vendors, 77.3eBioinformatics, 2.3.10
     clustering, 60ebio, 2.3.10
     file, 52edit ligand, 99
     property.monitor, 53editor, 73
     search, 55effect of mutation, 46
chemicals, 77.4, 77.5, 77.5.1electrostatics, 51, 70.2.1
cheminformatics, 3, 66, 78eln, 70.6
chemistry, 17, 79.2email, 2
chemistry_tools, 49embed, 69, 70
children, 3.2embedppt, 96
chirality, 73emperor of all maladies, 5.21
chrome, 69enumeration, 61
cloud, 105eugene, 1
     computing, 105european workshop, 5.9
cluster, 73evaluate, 21
comp, 15evaluation, 133
competition, 139     feedback, 116
compound, 79.2, 79.7eventreg, 5.16
compounds, 77.4, 77.5, 77.5.1fakesec, 134
consulting, 78feature comparison, 137
contacts, 2fingerprint, 70.3.1, 70.5
converter, 79.2     models, 70.3.1
crystallographic_analysis_tools, 43firefox, 69, 70, 70.1
csv, 52first place, 139
customer, 78flexibility, 98
customers, 4flexible, 51.2, 51.2.1
d3r, 139focus, 5.21
d3r_success, 139forum, 5.7
database, 51.2, 51.2.1, 77.2, 77.3free, 22
dec08, 141.2full, 51
decomposition, 61full073004, 2.3.2
degradation, 104genesoft, 2.3.4
demo, 130getbrowser, 85
demo1107, 132giga search, 102, 103
design, 51.2gingerdemo, 79.5
dfaModels, 70.5glues, 104
directions, 2gnf, 2.3.8
dlid, 42grants, 2.2
dock, 99graphics, 5.22, 5.23, 5.24
docking, 3, 51, 51.2, 51.2.1, 78, 98, 105, 131, 139     gallery, 5.22
documentary, 5.21help, 13, 131, 138
documents, 2.3hitachi, 2.3.7
download, 12hitachipr, 2.3.7
draw, 73homology, 3, 17, 51, 77.1
     compounds, 53hotels, 5.2.3

html, 2.3icmpocketfinder, 42
hybrid, 70.5icmugm12, 5.1
hyperlinked text, 2.3imdp, 2.3
iMolview, 71     silico, 79.8
icb file, 40induced fit, 98
          writer, 40          docking, 98
icm, 6, 17, 22, 51, 51.2.1install acticm linux, 83
     browser, 22          mac, 84
          pro tutorials, 120          win, 82
          screenshots, 29     browser linux, 20
          tutorials, 119.1          mac, 19
     chemist, 66          win, 18
          cluster, 93installing icm for cluster, 51.1
          pro, 73interaction diagram, 62
               qsar, 77internet explorer, 70
               webinar, 5.12.1ipad, 71, 90
          spreadsheet, 92iphone, 71
          tutorials, 120.1isostere, 103
          webinar, 5.12jan11, 141.1
     cloud, 105japan, 2.3.7
     command language, 14job, 5
     objects, 23     opportunites, 9
     pocket finder, 42     queues, 51.1.1
     scarab, 70.6jobs, 9
     user group meeting, 5.1, 5.2july08, 141.4
icm-browser, 22knime, 70.7
icm-pro, 17     nodes, 70.7
icmPocketFinder, 3knowledge base, 5.7
icm_bioinformatics, 48la, 5.19
icm_browser, 22learn, 73
icm_browser_alignments, 26legal, 10.1, 10.2
icm_browser_distance, 32ligand editor, 99
icm_browser_file, 23likeness, 79
icm_browser_graphics, 34linker, 104
icm_browser_molecular_graphics, 25linux cluster, 51.1
icm_browser_pro, 40location, 2
icm_browser_pro_alignments, 39logP, 73, 79.8.1
icm_browser_pro_crystallography, 37logS, 79.8.1
icm_browser_pro_mesh, 28logo, 70.2
icm_browser_pro_molecular_documents, 40.1logos, 91
icm_browser_pro_movies, 35logp, 79.8
icm_browser_pro_plots, 31logs, 79.8
icm_browser_pro_spreadsheets, 38logsw, 79.8
icm_browser_pro_structure_analysis, 36london, 5.9
icm_browser_pro_superimpose, 30london_workshop 2015, 5.9
icm_browser_search_pdb, 24loop, 3
icm_browser_superimpose, 27main, 120.2
icm_browser_views, 33manual, 13
icm_docking_comp, 5.6markush, 61, 66
icm_pro, 51max, 1

meetmap, 5.2.1pharmacophore, 100
microsoft, 70     search, 56, 59
minimize, 99phone, 2
missing, 80plexus, 2.3.5
model, 77.1plexusvaccine, 2.3.5
modeling, 3, 51, 78, 104plosone, 136
mol, 23, 51.2, 77.3pocket, 3, 51
mol2, 23pockets, 42
molcart, 17, 77.2, 77.3, 77.4, 77.5, 77.5.1, 79.7polar surface area, 79.8.1
     compounds, 77.3position, 9
molecular, 2.3, 79.7powerpoint, 70
     viewer, 22predict, 73
molecular_graphics, 50prediction, 77.1, 78, 79.8, 79.8.1
moledit, 79.8.2presentations, 2.3, 40
molgnfpressrapril12, 2.3.8price, 87
molscreen, 70.3, 70.4, 70.5privacy policy, 10.2
molsoft, 1, 5.21, 79.7, 79.8pro, 51
mpex, 2.3.3product gallery, 5.24
mpex061803, 2.3.3     galleryold, 11
mpo, 58     prices, 87
mprop, 79.8products, 17
mpropdesc, 79.8.1properties, 79.8.1
msearch, 79.7protac, 104
multi parameter optimization, 58protein, 22, 51, 72
multiple slides, 40     structure, 40
     views, 40protein-protein interactions, 79
mutation, 46protein_protein_docking, 45
     prediction, 46protein_structure_analysis, 41
mysql, 77.2protein_structure_prediction, 47
neural network, 79.3publications, 6, 10
     features, 138published, 10
     icm browser, 67qsar, 70.3.1, 73
     version, 138queuing program, 51.1.1
news, 2.2rapf, 79.4
newsletter, 141raush, 1
non-commercial, 87rebel, 70.2.1
nonredundant chemical database, 77.3receptor, 51, 51.2, 51.2.1, 98
notebook, 70.6references, 6
notes, 70.1refinement, 3
novartis, 2.3.8, 5.21, 105release, 70.1
nra, 91results, 10
oct08, 141.3rgroup, 61
oda, 81rigid, 79.4, 79.5
openings, 9rings, 53
papers, 10rita, 1
pbs, 5.21, 51.1.1rna, 106
     documentary, 5.21     drug design, 106
pc, 2.1rotation, 2.3
pdb, 23, 72, 79.1ruben, 1
pdbv, 79.1sandiegofire, 3.2

scaffold hopping, 100technology, 3
scarab, 70.6templates, 53
screen, 78terms of use, 10.1
screening, 51.2, 77.4, 77.5.1, 98, 139test, 94
screenshot gallery, 5.23testimonials, 95
scripting, 14tl, 5.20
scripting_tutorials, 14tortool, 79.3
scriptreg, 5.13tosion, 79.3
sdf, 51.2, 52, 77.2, 77.3totrov, 1, 100
search, 73, 79.7, 89tox, 73
sequence, 48, 77.1toxicity, 57
servers, 79training, 3.1, 5.8, 5.12.2, 5.13, 5.16, 5.18
service, 129trainingreg, 5.18
services, 70.3, 78transaction void, 88
sgc, 2.3.1transitions, 2.3
similarity search, 79.7trial, 21, 133
simulation, 51     license, 21
sitemap, 140tsri, 2.3.9
sketch.compounds, 53tutorials, 118
slides, 2.3, 40     feedback, 117
small.molecule.drug, 53ugm2016, 5.17
small_molecule_docking, 44ugmArchives, 5.14
smooth view transitions, 40ultra large libraries, 51.4.1
software development, 3, 78          screening, 51.3
solubility, 79.8.1unsubscribe, 7
speak09, 5.2.4update, 138
speakermap, 5.2.2upgrade, 86
stereoisomers tautomers, 76     synthes, 51.4
structure, 72, 77.1vaccine, 2.3.5
     prediction, 3vendors, 77.5.1
structure-based, 3version372, 135
student, 87video activeicm1, 126
subscribe, 8     activeicm2, 127
substructure, 102     dock1, 128
     search, 79.7     ligand editor1, 123
success stories, 107          editor2, 124
          gpcr competition, 108          editor3, 125
               familyA, 109     pdb1, 121
               familyB, 110     pdb2, 122
          induced fit, 113view PDB, 79
          kinases, 111     protein viewer, 40
          nuclear receptor, 112viewer, 79.1, 79.2, 79.3
          protein docking, 115virtual, 51.2, 77.5.1, 78
          virtual ligand screening, 114     screening, 3, 51.2.1, 70.3, 79.8, 103, 105
superimpose, 79.4, 79.5vls, 3, 17, 51.2, 98
support, 2, 13     on cluster, 51.1
swissprot, 72water solubility, 79.8
switch_to_icm, 5.5web demos, 5.12.2
syrrx, 2.3.6webinar, 5.11, 5.12.2, 5.15
teaching, 2.2     archives, 5.15

webinar_registration, 5.12.2 
webinar_signup, 5.11 
whats new, 138 
which_product, 16 
workshop, 3.1, 5.1, 5.4, 5.8, 5.9, 5.13, 5.16, 5.18 
workshops, 2.2 
ws0905, 3.1 
xpdb, 17, 72